jgi.p|Nanoce1779_2|603600, mRNA_8684 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|603600
Unique NamemRNA_8684
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1028
Alignment locationscaffold_27:163335..164362 -

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Properties
Property NameValue
TranscriptId603686
TrackFilteredModels2
ProteinId603600
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_27supercontigscaffold_27:163335..164362 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|603600gene_8684Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|603600mRNA_8684-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_8684CDS_8684Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_8684 ID=mRNA_8684|Name=jgi.p|Nanoce1779_2|603600|organism=Nannochloropsis oceanica|type=mRNA|length=1028bp
CAGGAATCATGAATAAGGTCCTTCGCGTGGTGGACTGGTTCGTTCGGACG
CCCGAGATACCCATAGGTAGTGCTAAGCTTGTCTCAATCCCCTTGTCGCA
CTACTGTGAAAAGGCTCGTTGGTGCCTCGACTTATCGCCGCTCCGCGACA
CGTACATCGAAGAGGCGCACGCCCCTGTGTTTCACACCAAGCATGTGGTC
TCCTTGACCAATAAACGCAGCGCTTCAAGCACCCCTGTGTTCGTCCTGTC
TGGAAACAGCACGAGCGACCCACCAACCATAATCCAGGGCTCTGCAATGA
TCCTCGCGCACCTGGCCCAGACCTTCCCTGCCGAGCTTGGACACCTCTAC
CCTCCCGGAGAAAAGGGAGAGCGTGTGCGCACTCTCGAACAGGTCTTGGA
CAACCAATTGGGTCCACAGTCGCGCAAGCTGGTGTATTGGGCAATGTGGC
AGGCCCGGCAAGAGGGACTGTCCACATCCAACCCCTTGTTAGACGCGCTT
GTACCTAAGGTCGAAGCCCTGCTCTGGAATCTGGGGGAGGGCAAGATCCT
GTTCAAGATGATGCAAGCGATGAATATTGACGCCGATTCCATTGTCACTG
CCCTGGAAGACTGTCGGCAAGTCTTCAAGGAAGCCTCCGCCATGCTGGCG
GGCGAGGGCGAGGGGGAAGGCAAGGGCCAGCAGAGAAAGTACCTTCTAGG
CGGAGAGCGCATGACGGCTGCAGACCTGACATTGGCTGCCTTGGCCTATC
CCCTCATTAATCCGCCTGCATTTGCCTCACTGGGCCTCTCTGGGTCTAGC
GCTTCCCCCTGGACCATGAAGCTGGGTGATTTGAGTGCCGAGTTCCGAGC
TACCCCTGCGGGTCAGCATGTCCTCCGGCTGTATGCAGAGGAGCGATTTC
CTGCTGTGGATGGAACAGGCACGTTGTGTCTGCGGACGGTGAATTGTAAC
AAGATGCCATGGCAGTAAATTAGAACTGGACGTGATGTTTCTTTAATTTC
GGTCTTGGTGACGCCCGAGGTTCGTACG
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protein sequence of jgi.p|Nanoce1779_2|603600

>mRNA_8684-protein ID=mRNA_8684-protein|Name=jgi.p|Nanoce1779_2|603600|organism=Nannochloropsis oceanica|type=polypeptide|length=320bp
MNKVLRVVDWFVRTPEIPIGSAKLVSIPLSHYCEKARWCLDLSPLRDTYI
EEAHAPVFHTKHVVSLTNKRSASSTPVFVLSGNSTSDPPTIIQGSAMILA
HLAQTFPAELGHLYPPGEKGERVRTLEQVLDNQLGPQSRKLVYWAMWQAR
QEGLSTSNPLLDALVPKVEALLWNLGEGKILFKMMQAMNIDADSIVTALE
DCRQVFKEASAMLAGEGEGEGKGQQRKYLLGGERMTAADLTLAALAYPLI
NPPAFASLGLSGSSASPWTMKLGDLSAEFRATPAGQHVLRLYAEERFPAV
DGTGTLCLRTVNCNKMPWQ*
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mRNA from alignment at scaffold_27:163335..164362-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_8684 ID=mRNA_8684|Name=jgi.p|Nanoce1779_2|603600|organism=Nannochloropsis oceanica|type=mRNA|length=1028bp|location=Sequence derived from alignment at scaffold_27:163335..164362- (Nannochloropsis oceanica)
CAGGAATCATGAATAAGGTCCTTCGCGTGGTGGACTGGTTCGTTCGGACG
CCCGAGATACCCATAGGTAGTGCTAAGCTTGTCTCAATCCCCTTGTCGCA
CTACTGTGAAAAGGCTCGTTGGTGCCTCGACTTATCGCCGCTCCGCGACA
CGTACATCGAAGAGGCGCACGCCCCTGTGTTTCACACCAAGCATGTGGTC
TCCTTGACCAATAAACGCAGCGCTTCAAGCACCCCTGTGTTCGTCCTGTC
TGGAAACAGCACGAGCGACCCACCAACCATAATCCAGGGCTCTGCAATGA
TCCTCGCGCACCTGGCCCAGACCTTCCCTGCCGAGCTTGGACACCTCTAC
CCTCCCGGAGAAAAGGGAGAGCGTGTGCGCACTCTCGAACAGGTCTTGGA
CAACCAATTGGGTCCACAGTCGCGCAAGCTGGTGTATTGGGCAATGTGGC
AGGCCCGGCAAGAGGGACTGTCCACATCCAACCCCTTGTTAGACGCGCTT
GTACCTAAGGTCGAAGCCCTGCTCTGGAATCTGGGGGAGGGCAAGATCCT
GTTCAAGATGATGCAAGCGATGAATATTGACGCCGATTCCATTGTCACTG
CCCTGGAAGACTGTCGGCAAGTCTTCAAGGAAGCCTCCGCCATGCTGGCG
GGCGAGGGCGAGGGGGAAGGCAAGGGCCAGCAGAGAAAGTACCTTCTAGG
CGGAGAGCGCATGACGGCTGCAGACCTGACATTGGCTGCCTTGGCCTATC
CCCTCATTAATCCGCCTGCATTTGCCTCACTGGGCCTCTCTGGGTCTAGC
GCTTCCCCCTGGACCATGAAGCTGGGTGATTTGAGTGCCGAGTTCCGAGC
TACCCCTGCGGGTCAGCATGTCCTCCGGCTGTATGCAGAGGAGCGATTTC
CTGCTGTGGATGGAACAGGCACGTTGTGTCTGCGGACGGTGAATTGTAAC
AAGATGCCATGGCAGTAAATTAGAACTGGACGTGATGTTTCTTTAATTTC
GGTCTTGGTGACGCCCGAGGTTCGTACG
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Coding sequence (CDS) from alignment at scaffold_27:163335..164362-

>mRNA_8684 ID=mRNA_8684|Name=jgi.p|Nanoce1779_2|603600|organism=Nannochloropsis oceanica|type=CDS|length=960bp|location=Sequence derived from alignment at scaffold_27:163335..164362- (Nannochloropsis oceanica)
ATGAATAAGGTCCTTCGCGTGGTGGACTGGTTCGTTCGGACGCCCGAGAT
ACCCATAGGTAGTGCTAAGCTTGTCTCAATCCCCTTGTCGCACTACTGTG
AAAAGGCTCGTTGGTGCCTCGACTTATCGCCGCTCCGCGACACGTACATC
GAAGAGGCGCACGCCCCTGTGTTTCACACCAAGCATGTGGTCTCCTTGAC
CAATAAACGCAGCGCTTCAAGCACCCCTGTGTTCGTCCTGTCTGGAAACA
GCACGAGCGACCCACCAACCATAATCCAGGGCTCTGCAATGATCCTCGCG
CACCTGGCCCAGACCTTCCCTGCCGAGCTTGGACACCTCTACCCTCCCGG
AGAAAAGGGAGAGCGTGTGCGCACTCTCGAACAGGTCTTGGACAACCAAT
TGGGTCCACAGTCGCGCAAGCTGGTGTATTGGGCAATGTGGCAGGCCCGG
CAAGAGGGACTGTCCACATCCAACCCCTTGTTAGACGCGCTTGTACCTAA
GGTCGAAGCCCTGCTCTGGAATCTGGGGGAGGGCAAGATCCTGTTCAAGA
TGATGCAAGCGATGAATATTGACGCCGATTCCATTGTCACTGCCCTGGAA
GACTGTCGGCAAGTCTTCAAGGAAGCCTCCGCCATGCTGGCGGGCGAGGG
CGAGGGGGAAGGCAAGGGCCAGCAGAGAAAGTACCTTCTAGGCGGAGAGC
GCATGACGGCTGCAGACCTGACATTGGCTGCCTTGGCCTATCCCCTCATT
AATCCGCCTGCATTTGCCTCACTGGGCCTCTCTGGGTCTAGCGCTTCCCC
CTGGACCATGAAGCTGGGTGATTTGAGTGCCGAGTTCCGAGCTACCCCTG
CGGGTCAGCATGTCCTCCGGCTGTATGCAGAGGAGCGATTTCCTGCTGTG
GATGGAACAGGCACGTTGTGTCTGCGGACGGTGAATTGTAACAAGATGCC
ATGGCAGTAA
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Synonyms
Publications