jgi.p|Nanoce1779_2|603594, mRNA_8683 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|603594
Unique Name	mRNA_8683
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1727
Alignment location	scaffold_27:161289..163334 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	603680
Track	FilteredModels2
ProteinId	603594

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_27	supercontig	scaffold_27:161289..163334 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|603594	gene_8683	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|603594	mRNA_8683-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_8683	CDS_8683	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_27:161289..163334+
coding sequence from alignment at scaffold_27:161289..163334+

mRNA sequence

>mRNA_8683 ID=mRNA_8683|Name=jgi.p|Nanoce1779_2|603594|organism=Nannochloropsis oceanica|type=mRNA|length=1727bp
AGGTAGAGAAGTTATCGAGTCGCTGGAAGATGCGGATGGCAGCTGTGCGG
TGGCTACAGCAAGTCAAAAGCAAAAGAAGCGCCGCCTGGTTGTTCGCCTA
CGTTCATCATTAGAGTTCTCTATGCACCTGGAGGGAGGAATGAACGACTA
GCATGATGGACGAAGATAACACGAACATGAGCGACGGAAGATCTGCGTGA
GCCAAGCATGCTCTGCTGCATGGCTTATAACTGGCCTTAGGGTGCGCAAC
TCGAAAGCGAAGCCGGCGGGAGTTCTTCATTACTGGCGCTGGGTGGGAAC
AATACCTCGCATGGCACCCGAGCTACTCCAAACTATCATACCTGGTGGTT
GTCCACGTCTTTTTACGGTGTTGGACTTTTTACTAAGACGCACCACTCGT
GGAGTTGTCGTGCCCATGGGAGCTTGCGTGGGCCCCTGGCGCCCTTAGGT
GTGGCCCGGCCTCCCTCCTTCGCTCTCTCCCTCCCCGCCCAGGGTATTTG
GGGCCTCATGAGCAAACTTTGGACATCATGGGACGCGTCTCAACGCGCCT
TGTTGCCATTCTTATCCTTTTTTTGGGTTTCCCGCGTTGTCGTCTACGAT
GTGCAACAGATAAAGAGAGATGTCGCCTCAAACGATTTGCTCACCTCTCC
CCATGTACATCCACACGCACACGCACGCACAGGCAACCACACCACTTTCC
GACTCACACCATGAGCAAAGACACCAAAGGCGACAAGGGGGGGGCAACCG
AGCTAACAGAGGAGCAGATCGCCGAGTTCAAGGAGGCCTTCTCCCTGTTT
GATAAGGACGGTGACGGGACCATTACCACCAAGGAACTGGGCACGGTCAT
GCGTTCGTTGGGACAGAACCCGACGGAGGCCGAGTTACAAGATATGATCA
ATGAGGTGGATGCTGATGGAAATGGCACCATCGATTTCCCGGAATTTCTG
ACGATGATGGCCAGGAAGATGAAGGATACGGACTCGGAGGAGGAGATTCT
GGAGGCGTTTAAGGTCTTCGACAAGGACGGGAATGGCTTCATCTCCGCGG
CTGAGCTCCGACACATCATGACCAACCTGGGGGAGAAGCTGACAGACCAG
GAAGTTGACGAAATGATCCGTGAGGCGGACATTGACGGAGACGGTCAAAT
CAACTACGAGGAGTTCGTGAAGATGATGATGGCCAAATAGGGAGGAGAGG
GAACGAGAGAGGAAGGCAAGGCAACTTAAAACACGGACGGAGAGCGTAAA
ATTAAGGAGCGTACGGGTAAATGGGGAAGAGGGAAGAGGGAGATGTAGAA
GGGCTAAAGAGAAAGAAGTGTGCTCACGGCCCCTCTCGTTGCAGGCAGCG
TTATGGGCGAGAATGGAGGGGTGGAAGGGAAGGGGGGAAGGGCGGTGGAC
CCCTTCATTTATTTTCCGGCGATATATACACTTATTTTTATCATGTTGTT
ATCCCATGTGAATGGGGAAAGAGCGGCCATGTAGCAAAGGATGGACCCCT
TGTCGTCTGTTCTTACCCTTCTCTATTCCGTTTTCGCATGAGTCAGACAC
ACTTATCGATCGAGTCGCTGGGAACAATTTGAATGGGGGAAGGAGTCATC
CGTTTTGTGAGAAAGAAAAGAAGAAATAAGGAAGAGAAAGAAACACGTTG
ATCGTAAAATGAAATGATTTCGTTAGGCCTTGGAGCTCGATTCTAGTAGT
TAGCGATCTTTACCGATCATGTACGTA

protein sequence of jgi.p|Nanoce1779_2|603594

>mRNA_8683-protein ID=mRNA_8683-protein|Name=jgi.p|Nanoce1779_2|603594|organism=Nannochloropsis oceanica|type=polypeptide|length=221bp
MGRVSTRLVAILILFLGFPRCRLRCATDKERCRLKRFAHLSPCTSTRTRT
HRQPHHFPTHTMSKDTKGDKGGATELTEEQIAEFKEAFSLFDKDGDGTIT
TKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKD
TDSEEEILEAFKVFDKDGNGFISAAELRHIMTNLGEKLTDQEVDEMIREA
DIDGDGQINYEEFVKMMMAK*

mRNA from alignment at scaffold_27:161289..163334+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_8683 ID=mRNA_8683|Name=jgi.p|Nanoce1779_2|603594|organism=Nannochloropsis oceanica|type=mRNA|length=2046bp|location=Sequence derived from alignment at scaffold_27:161289..163334+ (Nannochloropsis oceanica)
AGGTAGAGAAGTTATCGAGTCGCTGGAAGATGCGGATGGCAGCTGTGCGG
TGGCTACAGCAAGTCAAAAGCAAAAGAAGCGCCGCCTGGTTGTTCGCCTA
CGTTCATCATTAGAGTTCTCTATGCACCTGGAGGGAGGAATGAACGACTA
GCATGATGGACGAAGATAACACGAACATGAGCGACGGAAGATCTGCGTGA
GCCAAGCATGCTCTGCTGCATGGCTTATAACTGGCCTTAGGGTGCGCAAC
TCGAAAGCGAAGCCGGCGGGAGTTCTTCATTACTGGCGCTGGGTGGGAAC
AATACCTCGCATGGCACCCGAGCTACTCCAAACTATCATACCTGGTGGTT
GTCCACGTCTTTTTACGGTGTTGGACTTTTTACTAAGACGCACCACTCGT
GGAGTTGTCGTGCCCATGGGAGCTTGCGTGGGCCCCTGGCGCCCTTAGGT
GTGGCCCGGCCTCCCTCCTTCGCTCTCTCCCTCCCCGCCCAGGGTATTTG
GGGCCTCATGAGCAAACTTTGGACATCATGGGACGCGTCTCAACGCGCCT
TGTTGCCATTCTTATCCTTTTTTTGGGTTTCCCGCGTTGTCGTCTACGAT
GTGCAACAGATAAAGAGAGATGTCGCCTCAAACGATTTGCTCACCTCTCC
CCATGTACATCCACACGCACACGCACGCACAGGCAACCACACCACTTTCC
GACTCACACCATGAGCAAAGACACCAAAGGCGACAAGGGGGGGGCAACCG
AGCTAACAGAGGAGCAGATCGCCGGTACGTTCCTCCCTCCCTCCCTCTCT
TCCTCATACCCCCTCTTCCTTCCCCCCTCTCGCTTCTTCCCCTCAATTTA
ACCCGTCGTATGCCTTCCTTTCGCATCAGAGTTCAAGGAGGCCTTCTCCC
TGTTTGATAAGGACGGTGACGGGACCATTACCACCAAGGAACTGGGCACG
GTCATGCGTTCGTTGGGACAGAACCCGACGGAGGCCGAGTTACAAGATAT
GATCAATGAGGTGGATGCTGATGGAAATGGCACCATCGATTTCCCGGAAT
TTCTGACGATGATGGCCAGGAAGATGAAGGATACGGACTCGGAGGAGGAG
ATTCTGGAGGCGTTTAAGGTAGGCAGGCAGGCAGGGAGTGAGAGAGGGAT
GGAGAGGAGGCCTTAGTCCGTTGTCCTACTTTTTTGTCCAATCAACTTCC
TCCAGCGTGAGAGTACGGATTTAGACAGGCGGCCGTGTATACCCCTTGCA
TTTAGATCTTAACACTACTTGCTGCCGACGGTGATGTCATTGAACCCACC
TCCCCTCTCCTTCCTTTTCTCCGTTTTCCCAGGTCTTCGACAAGGACGGG
AATGGCTTCATCTCCGCGGCTGAGCTCCGACACATCATGACCAACCTGGG
GGAGAAGCTGACAGACCAGGAAGTTGACGAAATGATCCGTGAGGCGGACA
TTGACGGAGACGGTCAAATCAACTACGAGGAGTTCGTGAAGATGATGATG
GCCAAATAGGGAGGAGAGGGAACGAGAGAGGAAGGCAAGGCAACTTAAAA
CACGGACGGAGAGCGTAAAATTAAGGAGCGTACGGGTAAATGGGGAAGAG
GGAAGAGGGAGATGTAGAAGGGCTAAAGAGAAAGAAGTGTGCTCACGGCC
CCTCTCGTTGCAGGCAGCGTTATGGGCGAGAATGGAGGGGTGGAAGGGAA
GGGGGGAAGGGCGGTGGACCCCTTCATTTATTTTCCGGCGATATATACAC
TTATTTTTATCATGTTGTTATCCCATGTGAATGGGGAAAGAGCGGCCATG
TAGCAAAGGATGGACCCCTTGTCGTCTGTTCTTACCCTTCTCTATTCCGT
TTTCGCATGAGTCAGACACACTTATCGATCGAGTCGCTGGGAACAATTTG
AATGGGGGAAGGAGTCATCCGTTTTGTGAGAAAGAAAAGAAGAAATAAGG
AAGAGAAAGAAACACGTTGATCGTAAAATGAAATGATTTCGTTAGGCCTT
GGAGCTCGATTCTAGTAGTTAGCGATCTTTACCGATCATGTACGTA

Coding sequence (CDS) from alignment at scaffold_27:161289..163334+

>mRNA_8683 ID=mRNA_8683|Name=jgi.p|Nanoce1779_2|603594|organism=Nannochloropsis oceanica|type=CDS|length=1989bp|location=Sequence derived from alignment at scaffold_27:161289..163334+ (Nannochloropsis oceanica)
ATGGGACGCGTCTCAACGCGCCTTGTTGCCATTCTTATCCTTTTTTTGGG
TTTCCCGCGTTGTCGTCTACGATGTGCAACAGATAAAGAGAGATGTCGCC
TCAAACGATTTGCTCACCTCTCCCCATGTACATCCACACGCACACGCACG
CACAGGCAACCACACCACTTTCCGACTCACACCATGAGCAAAGACACCAA
AGGCGACAAGGGGGGGGCAACCGAGCTAACAGAGGAGCAGATCGCCGAGT
TCAAGGAGGCCTTCTCCCTGTTTGATAAGGACGGTGACGGGACCATTACC
ACCAAGGAACTGGGCACGGTCATGCGTTCGTTGGGACAGAACCCGACGGA
GGCCGAGTTACAAGATATGATCAATGAGGTGGATGCTGATGGAAATGGCA
CCATCGATTTCCCGGAATTTCTGACGATGATGGCCAGGAAGATGAAGGAT
ACGGACTCGGAGGAGGAGATTCTGGAGGCGTTTAAGGTCTTCGACAAGGA
CGGGAATGGCTTCATCTCCGCGGCTGAGCTCCGACACATCATGACCAACC
TGGGGGAGAAGCTGACAGACCAGGAAGTTGACGAAATGATCCGTGAGGCG
GACATTGACGGAGACGGTCAAATCAACTACGAGGAGTTCGTGAAGATGAT
GATGGCCAAATAGATGGGACGCGTCTCAACGCGCCTTGTTGCCATTCTTA
TCCTTTTTTTGGGTTTCCCGCGTTGTCGTCTACGATGTGCAACAGATAAA
GAGAGATGTCGCCTCAAACGATTTGCTCACCTCTCCCCATGTACATCCAC
ACGCACACGCACGCACAGGCAACCACACCACTTTCCGACTCACACCATGA
GCAAAGACACCAAAGGCGACAAGGGGGGGGCAACCGAGCTAACAGAGGAG
CAGATCGCCGAGTTCAAGGAGGCCTTCTCCCTGTTTGATAAGGACGGTGA
CGGGACCATTACCACCAAGGAACTGGGCACGGTCATGCGTTCGTTGGGAC
AGAACCCGACGGAGGCCGAGTTACAAGATATGATCAATGAGGTGGATGCT
GATGGAAATGGCACCATCGATTTCCCGGAATTTCTGACGATGATGGCCAG
GAAGATGAAGGATACGGACTCGGAGGAGGAGATTCTGGAGGCGTTTAAGG
TCTTCGACAAGGACGGGAATGGCTTCATCTCCGCGGCTGAGCTCCGACAC
ATCATGACCAACCTGGGGGAGAAGCTGACAGACCAGGAAGTTGACGAAAT
GATCCGTGAGGCGGACATTGACGGAGACGGTCAAATCAACTACGAGGAGT
TCGTGAAGATGATGATGGCCAAATAGATGGGACGCGTCTCAACGCGCCTT
GTTGCCATTCTTATCCTTTTTTTGGGTTTCCCGCGTTGTCGTCTACGATG
TGCAACAGATAAAGAGAGATGTCGCCTCAAACGATTTGCTCACCTCTCCC
CATGTACATCCACACGCACACGCACGCACAGGCAACCACACCACTTTCCG
ACTCACACCATGAGCAAAGACACCAAAGGCGACAAGGGGGGGGCAACCGA
GCTAACAGAGGAGCAGATCGCCGAGTTCAAGGAGGCCTTCTCCCTGTTTG
ATAAGGACGGTGACGGGACCATTACCACCAAGGAACTGGGCACGGTCATG
CGTTCGTTGGGACAGAACCCGACGGAGGCCGAGTTACAAGATATGATCAA
TGAGGTGGATGCTGATGGAAATGGCACCATCGATTTCCCGGAATTTCTGA
CGATGATGGCCAGGAAGATGAAGGATACGGACTCGGAGGAGGAGATTCTG
GAGGCGTTTAAGGTCTTCGACAAGGACGGGAATGGCTTCATCTCCGCGGC
TGAGCTCCGACACATCATGACCAACCTGGGGGAGAAGCTGACAGACCAGG
AAGTTGACGAAATGATCCGTGAGGCGGACATTGACGGAGACGGTCAAATC
AACTACGAGGAGTTCGTGAAGATGATGATGGCCAAATAG

Synonyms

Publications