jgi.p|Nanoce1779_2|656719, mRNA_8682 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|656719
Unique Name	mRNA_8682
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1818
Alignment location	scaffold_27:159248..161155 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	656805
Track	FilteredModels2
ProteinId	656719

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_27	supercontig	scaffold_27:159248..161155 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|656719	gene_8682	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|656719	mRNA_8682-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_8682	CDS_8682	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_27:159248..161155+
coding sequence from alignment at scaffold_27:159248..161155+

mRNA sequence

>mRNA_8682 ID=mRNA_8682|Name=jgi.p|Nanoce1779_2|656719|organism=Nannochloropsis oceanica|type=mRNA|length=1818bp
ATGGAGTGGGGAGGCGGCGGCGGCGGCGGCAATGGGAGCGTGGAAACCAA
CCAGCAGCAGCAACAGCAGAGACCCCACCATTTTAAGACTGAGGAGGAAT
ATAACGGCTTCCTACGAGTTGCGCAAGAGTCCATAGCGATGGGGCGGGAA
ACCCTGACGGCAGTAGCGGGGCAGCAAGAGTCCTTAGACCGGGCCGAAGC
CGTTGTGGATTCCAATCGGTACTTGATCGATAAAAGTGCCAGATCATTGC
GAGGTATGTCTTGGTGGGGCTCTGTCAAGAATTTTTTTTCGGAAGAACCT
GCGGCACCGCGCCCTAAGGCGTCGAGCTGGATGACCAAGCAGCAGCAGCA
GCAGCCGCAGCAACAAGAAGAAGCAACAGGAAGAAGTAGTATTCCTACTA
GCAGCAGCATCAGCAGCAGAAACAGCATGGCGGCACAATGGCAAGATCAA
CCACAAGGCTATACCCAGAGCAGCAGTGACGAGCGTCAAGAGCTTTACTC
TCTCCGACATGAGGGGAACGCCACCGATGCCCGAGCCACACGCTCTCAAG
CAGGATCAGCCCCACCGGCGACCCTGGCCCGAGTCGCGCATATCCAAGAC
ACGTACCTGGAAAAACTGAGCAAGAGCGTCGATGAACAACGGGCCATTGG
AGGGACCTTACACGAAGCCTTGTCCGAGCAAGCGGCGCAAATAAATCGAT
TGGGAGAGAGTAGTGAGGGGCTCCATGATCGGACCCGTGCAGTGGTCCGC
AAGGCCGCTCGTGTATCCCGCTCCCAAGGAGGGTGGGTGGGGGAGAGACC
GAAATTGCATAAGTTCATAGCCTTTCGCGAGTTGCGCACGGGATTGTTCT
TGAGTGTGGTAGGGGAGGAGCTTAAGTTACAGGAGCCACACATGACCAAG
GCGTGTCAGTTTGCGGCCTACACGTGCCAGACGGCCTTAACGGGCTTACA
ATCAGTCCTATCTAGGAAATGGCTTGGGCAGCATTGGATCACCGGGGCTC
TCGGTGTTCGAGGTACGGGGCTAGGAAAGAATGAGGAGTGGGAGGTGGAC
TGGGGCAAGCCTGGGGGAGCATTCCTTTTGTCGTGTTCGGCGAATTGGGG
AAATGGAGGGTACTTGATGTTGGTACCTGGGAAGGAGGGAGGAAGAGGAG
GAGGGGAAGGGCGAGGGCAAGATGTGAGGTTGGGGGGGTATGGAATGGAA
GAGAGAGGAAAGGCAGCCTTATTTGAATTGATGGATTGCGAGACATACCG
GACGACGGAAGTCGTCACGGAGATAATGCACAAGAAGACACCGGCCGAGT
TGGCGGCGGAAGAGGAGCTGAGGAATAGGCAAGGGGTACTGGGGGGATGG
AGAACTGCAGCTTTGAAAGGGTCGAGAGGATGATCATGTTGATATATGTG
AAGGGAAAATGCGATGGGAACGACGAATAAGACGTCGAGCGATTTGGCGA
TGGAGAGGCGGATGAGGAGGATGCTCATGACGCGAAGGGATTATTGTTGA
TACAGCTTGTACAAAATAAATAGTTTTGAGTCCTGAGACGCTTGCATGGT
TAGTCCTTTTTTTTAAATCTCAGCTATTATCTCATCCACACTACTGTACA
TGCATGTGCGTTCCGAGCCGCTCCCCCCACAGCTGTGATGACAGTGATGA
CGAAGAAGAAGGGAGCGCCTGTCCTTTATTTTTAAAAAACCATGGCACAA
ATACGTCTGATCCACCAGACGCACGTCCCACCTCTAGACAGGATGGAGCC
GTCCTACACTTTTTGATTGTTACGCGCAAAAGCTTGCGCGTGCTATGGTT
GGAGTTGCTTTGGCGGAG

protein sequence of jgi.p|Nanoce1779_2|656719

>mRNA_8682-protein ID=mRNA_8682-protein|Name=jgi.p|Nanoce1779_2|656719|organism=Nannochloropsis oceanica|type=polypeptide|length=461bp
MEWGGGGGGGNGSVETNQQQQQQRPHHFKTEEEYNGFLRVAQESIAMGRE
TLTAVAGQQESLDRAEAVVDSNRYLIDKSARSLRGMSWWGSVKNFFSEEP
AAPRPKASSWMTKQQQQQPQQQEEATGRSSIPTSSSISSRNSMAAQWQDQ
PQGYTQSSSDERQELYSLRHEGNATDARATRSQAGSAPPATLARVAHIQD
TYLEKLSKSVDEQRAIGGTLHEALSEQAAQINRLGESSEGLHDRTRAVVR
KAARVSRSQGGWVGERPKLHKFIAFRELRTGLFLSVVGEELKLQEPHMTK
ACQFAAYTCQTALTGLQSVLSRKWLGQHWITGALGVRGTGLGKNEEWEVD
WGKPGGAFLLSCSANWGNGGYLMLVPGKEGGRGGGEGRGQDVRLGGYGME
ERGKAALFELMDCETYRTTEVVTEIMHKKTPAELAAEEELRNRQGVLGGW
RTAALKGSRG*

mRNA from alignment at scaffold_27:159248..161155+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_8682 ID=mRNA_8682|Name=jgi.p|Nanoce1779_2|656719|organism=Nannochloropsis oceanica|type=mRNA|length=1908bp|location=Sequence derived from alignment at scaffold_27:159248..161155+ (Nannochloropsis oceanica)
ATGGAGTGGGGAGGCGGCGGCGGCGGCGGCAATGGGAGCGTGGAAACCAA
CCAGCAGCAGCAACAGGTAAGCACTCCATCCCCTCCCTCGTACCCCACCT
CCCTCCTTCATCTCACCCAACCCAAATCTCATACAACATCACACGACCGC
ACAAAGCAGAGACCCCACCATTTTAAGACTGAGGAGGAATATAACGGCTT
CCTACGAGTTGCGCAAGAGTCCATAGCGATGGGGCGGGAAACCCTGACGG
CAGTAGCGGGGCAGCAAGAGTCCTTAGACCGGGCCGAAGCCGTTGTGGAT
TCCAATCGGTACTTGATCGATAAAAGTGCCAGATCATTGCGAGGTATGTC
TTGGTGGGGCTCTGTCAAGAATTTTTTTTCGGAAGAACCTGCGGCACCGC
GCCCTAAGGCGTCGAGCTGGATGACCAAGCAGCAGCAGCAGCAGCCGCAG
CAACAAGAAGAAGCAACAGGAAGAAGTAGTATTCCTACTAGCAGCAGCAT
CAGCAGCAGAAACAGCATGGCGGCACAATGGCAAGATCAACCACAAGGCT
ATACCCAGAGCAGCAGTGACGAGCGTCAAGAGCTTTACTCTCTCCGACAT
GAGGGGAACGCCACCGATGCCCGAGCCACACGCTCTCAAGCAGGATCAGC
CCCACCGGCGACCCTGGCCCGAGTCGCGCATATCCAAGACACGTACCTGG
AAAAACTGAGCAAGAGCGTCGATGAACAACGGGCCATTGGAGGGACCTTA
CACGAAGCCTTGTCCGAGCAAGCGGCGCAAATAAATCGATTGGGAGAGAG
TAGTGAGGGGCTCCATGATCGGACCCGTGCAGTGGTCCGCAAGGCCGCTC
GTGTATCCCGCTCCCAAGGAGGGTGGGTGGGGGAGAGACCGAAATTGCAT
AAGTTCATAGCCTTTCGCGAGTTGCGCACGGGATTGTTCTTGAGTGTGGT
AGGGGAGGAGCTTAAGTTACAGGAGCCACACATGACCAAGGCGTGTCAGT
TTGCGGCCTACACGTGCCAGACGGCCTTAACGGGCTTACAATCAGTCCTA
TCTAGGAAATGGCTTGGGCAGCATTGGATCACCGGGGCTCTCGGTGTTCG
AGGTACGGGGCTAGGAAAGAATGAGGAGTGGGAGGTGGACTGGGGCAAGC
CTGGGGGAGCATTCCTTTTGTCGTGTTCGGCGAATTGGGGAAATGGAGGG
TACTTGATGTTGGTACCTGGGAAGGAGGGAGGAAGAGGAGGAGGGGAAGG
GCGAGGGCAAGATGTGAGGTTGGGGGGGTATGGAATGGAAGAGAGAGGAA
AGGCAGCCTTATTTGAATTGATGGATTGCGAGACATACCGGACGACGGAA
GTCGTCACGGAGATAATGCACAAGAAGACACCGGCCGAGTTGGCGGCGGA
AGAGGAGCTGAGGAATAGGCAAGGGGTACTGGGGGGATGGAGAACTGCAG
CTTTGAAAGGGTCGAGAGGATGATCATGTTGATATATGTGAAGGGAAAAT
GCGATGGGAACGACGAATAAGACGTCGAGCGATTTGGCGATGGAGAGGCG
GATGAGGAGGATGCTCATGACGCGAAGGGATTATTGTTGATACAGCTTGT
ACAAAATAAATAGTTTTGAGTCCTGAGACGCTTGCATGGTTAGTCCTTTT
TTTTAAATCTCAGCTATTATCTCATCCACACTACTGTACATGCATGTGCG
TTCCGAGCCGCTCCCCCCACAGCTGTGATGACAGTGATGACGAAGAAGAA
GGGAGCGCCTGTCCTTTATTTTTAAAAAACCATGGCACAAATACGTCTGA
TCCACCAGACGCACGTCCCACCTCTAGACAGGATGGAGCCGTCCTACACT
TTTTGATTGTTACGCGCAAAAGCTTGCGCGTGCTATGGTTGGAGTTGCTT
TGGCGGAG

Coding sequence (CDS) from alignment at scaffold_27:159248..161155+

>mRNA_8682 ID=mRNA_8682|Name=jgi.p|Nanoce1779_2|656719|organism=Nannochloropsis oceanica|type=CDS|length=2766bp|location=Sequence derived from alignment at scaffold_27:159248..161155+ (Nannochloropsis oceanica)
ATGGAGTGGGGAGGCGGCGGCGGCGGCGGCAATGGGAGCGTGGAAACCAA
CCAGCAGCAGCAACAGCAGAGACCCCACCATTTTAAGACTGAGGAGGAAT
ATAACGGCTTCCTACGAGTTGCGCAAGAGTCCATAGCGATGGGGCGGGAA
ACCCTGACGGCAGTAGCGGGGCAGCAAGAGTCCTTAGACCGGGCCGAAGC
CGTTGTGGATTCCAATCGGTACTTGATCGATAAAAGTGCCAGATCATTGC
GAGGTATGTCTTGGTGGGGCTCTGTCAAGAATTTTTTTTCGGAAGAACCT
GCGGCACCGCGCCCTAAGGCGTCGAGCTGGATGACCAAGCAGCAGCAGCA
GCAGCCGCAGCAACAAGAAGAAGCAACAGGAAGAAGTAGTATTCCTACTA
GCAGCAGCATCAGCAGCAGAAACAGCATGGCGGCACAATGGCAAGATCAA
CCACAAGGCTATACCCAGAGCAGCAGTGACGAGCGTCAAGAGCTTTACTC
TCTCCGACATGAGGGGAACGCCACCGATGCCCGAGCCACACGCTCTCAAG
CAGGATCAGCCCCACCGGCGACCCTGGCCCGAGTCGCGCATATCCAAGAC
ACGTACCTGGAAAAACTGAGCAAGAGCGTCGATGAACAACGGGCCATTGG
AGGGACCTTACACGAAGCCTTGTCCGAGCAAGCGGCGCAAATAAATCGAT
TGGGAGAGAGTAGTGAGGGGCTCCATGATCGGACCCGTGCAGTGGTCCGC
AAGGCCGCTCGTGTATCCCGCTCCCAAGGAGGGTGGGTGGGGGAGAGACC
GAAATTGCATAAGTTCATAGCCTTTCGCGAGTTGCGCACGGGATTGTTCT
TGAGTGTGGTAGGGGAGGAGCTTAAGTTACAGGAGCCACACATGACCAAG
GCGTGTCAGTTTGCGGCCTACACGTGCCAGACGGCCTTAACGGGCTTACA
ATCAGTCCTATCTAGGAAATGGCTTGGGCAGCATTGGATCACCGGGGCTC
TCGGTGTTCGAGGTACGGGGCTAGGAAAGAATGAGGAGTGGGAGGTGGAC
TGGGGCAAGCCTGGGGGAGCATTCCTTTTGTCGTGTTCGGCGAATTGGGG
AAATGGAGGGTACTTGATGTTGGTACCTGGGAAGGAGGGAGGAAGAGGAG
GAGGGGAAGGGCGAGGGCAAGATGTGAGGTTGGGGGGGTATGGAATGGAA
GAGAGAGGAAAGGCAGCCTTATTTGAATTGATGGATTGCGAGACATACCG
GACGACGGAAGTCGTCACGGAGATAATGCACAAGAAGACACCGGCCGAGT
TGGCGGCGGAAGAGGAGCTGAGGAATAGGCAAGGGGTACTGGGGGGATGG
AGAACTGCAGCTTTGAAAGGGTCGAGAGGATGAATGGAGTGGGGAGGCGG
CGGCGGCGGCGGCAATGGGAGCGTGGAAACCAACCAGCAGCAGCAACAGC
AGAGACCCCACCATTTTAAGACTGAGGAGGAATATAACGGCTTCCTACGA
GTTGCGCAAGAGTCCATAGCGATGGGGCGGGAAACCCTGACGGCAGTAGC
GGGGCAGCAAGAGTCCTTAGACCGGGCCGAAGCCGTTGTGGATTCCAATC
GGTACTTGATCGATAAAAGTGCCAGATCATTGCGAGGTATGTCTTGGTGG
GGCTCTGTCAAGAATTTTTTTTCGGAAGAACCTGCGGCACCGCGCCCTAA
GGCGTCGAGCTGGATGACCAAGCAGCAGCAGCAGCAGCCGCAGCAACAAG
AAGAAGCAACAGGAAGAAGTAGTATTCCTACTAGCAGCAGCATCAGCAGC
AGAAACAGCATGGCGGCACAATGGCAAGATCAACCACAAGGCTATACCCA
GAGCAGCAGTGACGAGCGTCAAGAGCTTTACTCTCTCCGACATGAGGGGA
ACGCCACCGATGCCCGAGCCACACGCTCTCAAGCAGGATCAGCCCCACCG
GCGACCCTGGCCCGAGTCGCGCATATCCAAGACACGTACCTGGAAAAACT
GAGCAAGAGCGTCGATGAACAACGGGCCATTGGAGGGACCTTACACGAAG
CCTTGTCCGAGCAAGCGGCGCAAATAAATCGATTGGGAGAGAGTAGTGAG
GGGCTCCATGATCGGACCCGTGCAGTGGTCCGCAAGGCCGCTCGTGTATC
CCGCTCCCAAGGAGGGTGGGTGGGGGAGAGACCGAAATTGCATAAGTTCA
TAGCCTTTCGCGAGTTGCGCACGGGATTGTTCTTGAGTGTGGTAGGGGAG
GAGCTTAAGTTACAGGAGCCACACATGACCAAGGCGTGTCAGTTTGCGGC
CTACACGTGCCAGACGGCCTTAACGGGCTTACAATCAGTCCTATCTAGGA
AATGGCTTGGGCAGCATTGGATCACCGGGGCTCTCGGTGTTCGAGGTACG
GGGCTAGGAAAGAATGAGGAGTGGGAGGTGGACTGGGGCAAGCCTGGGGG
AGCATTCCTTTTGTCGTGTTCGGCGAATTGGGGAAATGGAGGGTACTTGA
TGTTGGTACCTGGGAAGGAGGGAGGAAGAGGAGGAGGGGAAGGGCGAGGG
CAAGATGTGAGGTTGGGGGGGTATGGAATGGAAGAGAGAGGAAAGGCAGC
CTTATTTGAATTGATGGATTGCGAGACATACCGGACGACGGAAGTCGTCA
CGGAGATAATGCACAAGAAGACACCGGCCGAGTTGGCGGCGGAAGAGGAG
CTGAGGAATAGGCAAGGGGTACTGGGGGGATGGAGAACTGCAGCTTTGAA
AGGGTCGAGAGGATGA

Synonyms

Publications