jgi.p|Nanoce1779_2|532827, mRNA_8680 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|532827
Unique Name	mRNA_8680
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1605
Alignment location	scaffold_27:155695..157465 -

Link to JBrowse

Properties


Property Name	Value
TranscriptId	532913
Track	FilteredModels2
ProteinId	532827

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_27	supercontig	scaffold_27:155695..157465 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|532827	gene_8680	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|532827	mRNA_8680-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_8680	CDS_8680	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_27:155695..157465-
coding sequence from alignment at scaffold_27:155695..157465-

mRNA sequence

>mRNA_8680 ID=mRNA_8680|Name=jgi.p|Nanoce1779_2|532827|organism=Nannochloropsis oceanica|type=mRNA|length=1605bp
ATGCTTTATTTTGCCGGATTTTTCGTCACGGAACACCTTGCCCTACGTGC
CACTGATCATCCCGAAGGCCTCTTGCCTGTTGCCAAGCTGGAGGAATGCT
GGTGGGGGATTCAGAGGGATTTATGCACGCAAATGGAAACGAAAACAATG
ATTGCAGTGTCGCCGGCGTTGCTTCTGCAGTTGAAGCAGACGGCGTTGTT
GCTGGCGTTTACCTTAGGGGAGGATTGTTTTCGGTTTAACACGCAGCCGT
TACTCGAGTCGGTGAGGGGCCTACTGAGAGAAAGGTATATTGACGCACAG
CTAGGGAGCTTGGAGAGGGTGTGTAGGGAGATCGTGGAGAAGGACGAATT
TCAACCGATGAATGTTGCGTCGGAGAGGGAATGCAGGGCTCTCGTCTATC
CTTTTGGCTTGGAGAAGCGGGTGGACCTGGTGGTGCTGTCAAAAGGAGGG
AGGGAGGGGAGGGAGGAAGGGGAGAACGTTGAAGCAGGCTCGATGGCGTT
GAGTCCCGTTGGCTGGACCGTGGGGAAGAAAGGGGGGGGAGGAAAGACAA
GAGGGACGGGGAGCTTCCCGAGGACGTTCCCATTTTCGGTGGTAGTCCCT
CGACTGTCGCTTGAGGTGTATAGGATGATTTTGTTTTGTTTTCTGTTTGG
GCTCCAGCTGCAGCATCTGGAAGGGATGGAAGGCACATTGTTGAGGCTTA
CGGAGGAAGGGCTTGGGGTCCTGAGCCAGTTGCTGAACAATGAATTGGAG
GGCGCGATGGAAAATGGCGCGAATTTCCCTATTTCGAAGGCCTGTCAGAT
CTCCGTGGATGCGGCAGCGTTAGCGCTGATGACGTTTAAGTTGGAAAGAT
TGCTTGTGGGGGCAGCTGCCAGATTTGGGTCGTTGACAGAGTCGGCGAGT
AGGGGGATCCCGGCATTGGTGAGGGAGGGAAGGAGGGTGCTGGAGAACAC
GGGCATTGCGGCGCAGCATTTAGTGTTTGAATTAATGCAGGCGAAAATCG
ATGAGTTGTTGATAGGAGGGATTGGATTTGTGGAGTGGGAGGCGAAGCGG
GTCGAGGCAGTACCGAGGCCGTATGTTGAGGATTTGGTGAATTATATGCA
AGTGACCTTTATGTGCCTGACCTACCTGCCCCAGACGGCGCGCGAAGGAC
TGCATTTCGCTTCGTGTGCGCACATCCATACAGTGATGCTTTCTACCTTG
CTGGATCCCCGGAAGGTCACAGCAGTGAATACCACCGGCTTGTACAATTT
AAGTCTGGATCTGAGGGCGCTGGAGGCGTTCGCTGACTCGTGTGGGGTGG
TGCATTTGAGAGAGTGTTTCGCCGAATTACGACAGACTTTGGGCGCACTG
TTACACAGGGACATTCATACTTTGATGCTTGACGCAGGTTTGAGACTAGG
GGTGTACCCGAAGCTCCAAACAGCGAATCTGGTGACAATTTTAGAGAAAT
ACAAGCCCTTGGGGCTCTTGGCGCAGGTAAAAAATCAACGGGGGGGGGGA
GGGCACGGAGGAGCGGGAGCGGGGGTCGATTTGCCGTATTTGGAGAGGAA
AAAGGTTGTGGAGTACCTGAAAGCCTTGCACAAACAGCTGCAGCACCAGG
GGTAG

protein sequence of jgi.p|Nanoce1779_2|532827

>mRNA_8680-protein ID=mRNA_8680-protein|Name=jgi.p|Nanoce1779_2|532827|organism=Nannochloropsis oceanica|type=polypeptide|length=535bp
MLYFAGFFVTEHLALRATDHPEGLLPVAKLEECWWGIQRDLCTQMETKTM
IAVSPALLLQLKQTALLLAFTLGEDCFRFNTQPLLESVRGLLRERYIDAQ
LGSLERVCREIVEKDEFQPMNVASERECRALVYPFGLEKRVDLVVLSKGG
REGREEGENVEAGSMALSPVGWTVGKKGGGGKTRGTGSFPRTFPFSVVVP
RLSLEVYRMILFCFLFGLQLQHLEGMEGTLLRLTEEGLGVLSQLLNNELE
GAMENGANFPISKACQISVDAAALALMTFKLERLLVGAAARFGSLTESAS
RGIPALVREGRRVLENTGIAAQHLVFELMQAKIDELLIGGIGFVEWEAKR
VEAVPRPYVEDLVNYMQVTFMCLTYLPQTAREGLHFASCAHIHTVMLSTL
LDPRKVTAVNTTGLYNLSLDLRALEAFADSCGVVHLRECFAELRQTLGAL
LHRDIHTLMLDAGLRLGVYPKLQTANLVTILEKYKPLGLLAQVKNQRGGG
GHGGAGAGVDLPYLERKKVVEYLKALHKQLQHQG*

mRNA from alignment at scaffold_27:155695..157465-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_8680 ID=mRNA_8680|Name=jgi.p|Nanoce1779_2|532827|organism=Nannochloropsis oceanica|type=mRNA|length=1771bp|location=Sequence derived from alignment at scaffold_27:155695..157465- (Nannochloropsis oceanica)
ATGCTTTATTTTGCCGGATTTTTCGTCACGGAACACCTTGCCCTACGTGC
CACTGATCATCCCGAAGGCCTCTTGCCTGTTGCCAAGCTGGAGGAATGCT
GGTGGGGGATTCAGAGGGATTTATGCACGCAAATGGAAACGAAAACAATG
ATTGCAGTGTCGCCGGCGTTGCTTCTGCAGTTGAAGCAGACGGCGTTGTT
GCTGGCGTTTACCTTAGGGGAGGATTGTTTTCGGTTTAACACGCAGCCGT
TACTCGAGTCGGTGAGGGGCCTACTGAGAGAAAGGTATATTGACGCACAG
CTAGGGAGCTTGGAGAGGGTGTGTAGGGAGATCGTGGAGAAGGACGAATT
TCAACCGATGAATGTTGCGTCGGAGAGGGAATGCAGGGCTCTCGTCTATC
CTTTTGGCTTGGAGAAGCGGGTGGACCTGGTGGTGCTGTCAAAAGGAGGG
AGGGAGGGGAGGGAGGAAGGGGAGAACGTTGAAGCAGGCTCGATGGCGTT
GAGTCCCGTTGGCTGGACCGTGGGGAAGAAAGGGGGGGGAGGAAAGACAA
GAGGGACGGGGAGCTTCCCGAGGACGTTCCCATTTTCGGTGGTAGTCCCT
CGACTGTCGCTTGAGGTGTATAGGATGATTTTGTTTTGTTTTCTGTTTGG
GCTCCAGCTGCAGCATCTGGAAGGGATGGAAGGCACATTGTTGAGGCTTA
CGGAGGAAGGGCTTGGGGTCCTGAGCCAGTTGCTGAACAATGAATTGGAG
GGCGCGATGGAAAATGGCGCGAATTTCCCTATTTCGAAGGCCTGTCAGAT
CTCCGTGGATGCGGCAGCGTTAGCGCTGATGACGTTTAAGTTGGAAAGAT
TGCTTGTGGGGGCAGCTGCCAGATTTGGGTCGTTGACAGAGTCGGCGAGT
AGGGGGATCCCGGCATTGGTGAGGGAGGGAAGGAGGGTGCTGGAGAACAC
GGGCATTGCGGCGCAGCATTTAGTGTTTGAATTAATGCAGGCGAAAATCG
ATGAGTTGTTGATAGGAGGGATTGGATTTGTGGAGTGGGAGGCGAAGCGG
GTCGAGGCAGTACCGAGGCCGTATGTTGAGGATTTGGTGAATTATATGCA
AGGTAAGGAAGGGAGAGGAGGGAACGGGGGGACGTGCGCTAGAATATTTA
TGAGTTGTTGGTAGGCAAGAGAGAGGGAGGTGTTGAGGGAGGGCTGGGGA
TCAGTCATTTATCTCACTTCTCGGGGGCGCCTCTCCCTCCACCCTTCCCT
CCCCTGCATCCCCCTTAGTGACCTTTATGTGCCTGACCTACCTGCCCCAG
ACGGCGCGCGAAGGACTGCATTTCGCTTCGTGTGCGCACATCCATACAGT
GATGCTTTCTACCTTGCTGGATCCCCGGAAGGTCACAGCAGTGAATACCA
CCGGCTTGTACAATTTAAGTCTGGATCTGAGGGCGCTGGAGGCGTTCGCT
GACTCGTGTGGGGTGGTGCATTTGAGAGAGTGTTTCGCCGAATTACGACA
GACTTTGGGCGCACTGTTACACAGGGACATTCATACTTTGATGCTTGACG
CAGGTTTGAGACTAGGGGTGTACCCGAAGCTCCAAACAGCGAATCTGGTG
ACAATTTTAGAGAAATACAAGCCCTTGGGGCTCTTGGCGCAGGTAAAAAA
TCAACGGGGGGGGGGAGGGCACGGAGGAGCGGGAGCGGGGGTCGATTTGC
CGTATTTGGAGAGGAAAAAGGTTGTGGAGTACCTGAAAGCCTTGCACAAA
CAGCTGCAGCACCAGGGGTAG

Coding sequence (CDS) from alignment at scaffold_27:155695..157465-

>mRNA_8680 ID=mRNA_8680|Name=jgi.p|Nanoce1779_2|532827|organism=Nannochloropsis oceanica|type=CDS|length=3210bp|location=Sequence derived from alignment at scaffold_27:155695..157465- (Nannochloropsis oceanica)
TGACCTTTATGTGCCTGACCTACCTGCCCCAGACGGCGCGCGAAGGACTG
CATTTCGCTTCGTGTGCGCACATCCATACAGTGATGCTTTCTACCTTGCT
GGATCCCCGGAAGGTCACAGCAGTGAATACCACCGGCTTGTACAATTTAA
GTCTGGATCTGAGGGCGCTGGAGGCGTTCGCTGACTCGTGTGGGGTGGTG
CATTTGAGAGAGTGTTTCGCCGAATTACGACAGACTTTGGGCGCACTGTT
ACACAGGGACATTCATACTTTGATGCTTGACGCAGGTTTGAGACTAGGGG
TGTACCCGAAGCTCCAAACAGCGAATCTGGTGACAATTTTAGAGAAATAC
AAGCCCTTGGGGCTCTTGGCGCAGGTAAAAAATCAACGGGGGGGGGGAGG
GCACGGAGGAGCGGGAGCGGGGGTCGATTTGCCGTATTTGGAGAGGAAAA
AGGTTGTGGAGTACCTGAAAGCCTTGCACAAACAGCTGCAGCACCAGGGG
TAGATGCTTTATTTTGCCGGATTTTTCGTCACGGAACACCTTGCCCTACG
TGCCACTGATCATCCCGAAGGCCTCTTGCCTGTTGCCAAGCTGGAGGAAT
GCTGGTGGGGGATTCAGAGGGATTTATGCACGCAAATGGAAACGAAAACA
ATGATTGCAGTGTCGCCGGCGTTGCTTCTGCAGTTGAAGCAGACGGCGTT
GTTGCTGGCGTTTACCTTAGGGGAGGATTGTTTTCGGTTTAACACGCAGC
CGTTACTCGAGTCGGTGAGGGGCCTACTGAGAGAAAGGTATATTGACGCA
CAGCTAGGGAGCTTGGAGAGGGTGTGTAGGGAGATCGTGGAGAAGGACGA
ATTTCAACCGATGAATGTTGCGTCGGAGAGGGAATGCAGGGCTCTCGTCT
ATCCTTTTGGCTTGGAGAAGCGGGTGGACCTGGTGGTGCTGTCAAAAGGA
GGGAGGGAGGGGAGGGAGGAAGGGGAGAACGTTGAAGCAGGCTCGATGGC
GTTGAGTCCCGTTGGCTGGACCGTGGGGAAGAAAGGGGGGGGAGGAAAGA
CAAGAGGGACGGGGAGCTTCCCGAGGACGTTCCCATTTTCGGTGGTAGTC
CCTCGACTGTCGCTTGAGGTGTATAGGATGATTTTGTTTTGTTTTCTGTT
TGGGCTCCAGCTGCAGCATCTGGAAGGGATGGAAGGCACATTGTTGAGGC
TTACGGAGGAAGGGCTTGGGGTCCTGAGCCAGTTGCTGAACAATGAATTG
GAGGGCGCGATGGAAAATGGCGCGAATTTCCCTATTTCGAAGGCCTGTCA
GATCTCCGTGGATGCGGCAGCGTTAGCGCTGATGACGTTTAAGTTGGAAA
GATTGCTTGTGGGGGCAGCTGCCAGATTTGGGTCGTTGACAGAGTCGGCG
AGTAGGGGGATCCCGGCATTGGTGAGGGAGGGAAGGAGGGTGCTGGAGAA
CACGGGCATTGCGGCGCAGCATTTAGTGTTTGAATTAATGCAGGCGAAAA
TCGATGAGTTGTTGATAGGAGGGATTGGATTTGTGGAGTGGGAGGCGAAG
CGGGTCGAGGCAGTACCGAGGCCGTATGTTGAGGATTTGGTGAATTATAT
GCAAGTGACCTTTATGTGCCTGACCTACCTGCCCCAGACGGCGCGCGAAG
GACTGCATTTCGCTTCGTGTGCGCACATCCATACAGTGATGCTTTCTACC
TTGCTGGATCCCCGGAAGGTCACAGCAGTGAATACCACCGGCTTGTACAA
TTTAAGTCTGGATCTGAGGGCGCTGGAGGCGTTCGCTGACTCGTGTGGGG
TGGTGCATTTGAGAGAGTGTTTCGCCGAATTACGACAGACTTTGGGCGCA
CTGTTACACAGGGACATTCATACTTTGATGCTTGACGCAGGTTTGAGACT
AGGGGTGTACCCGAAGCTCCAAACAGCGAATCTGGTGACAATTTTAGAGA
AATACAAGCCCTTGGGGCTCTTGGCGCAGGTAAAAAATCAACGGGGGGGG
GGAGGGCACGGAGGAGCGGGAGCGGGGGTCGATTTGCCGTATTTGGAGAG
GAAAAAGGTTGTGGAGTACCTGAAAGCCTTGCACAAACAGCTGCAGCACC
AGGGGTAGATGCTTTATTTTGCCGGATTTTTCGTCACGGAACACCTTGCC
CTACGTGCCACTGATCATCCCGAAGGCCTCTTGCCTGTTGCCAAGCTGGA
GGAATGCTGGTGGGGGATTCAGAGGGATTTATGCACGCAAATGGAAACGA
AAACAATGATTGCAGTGTCGCCGGCGTTGCTTCTGCAGTTGAAGCAGACG
GCGTTGTTGCTGGCGTTTACCTTAGGGGAGGATTGTTTTCGGTTTAACAC
GCAGCCGTTACTCGAGTCGGTGAGGGGCCTACTGAGAGAAAGGTATATTG
ACGCACAGCTAGGGAGCTTGGAGAGGGTGTGTAGGGAGATCGTGGAGAAG
GACGAATTTCAACCGATGAATGTTGCGTCGGAGAGGGAATGCAGGGCTCT
CGTCTATCCTTTTGGCTTGGAGAAGCGGGTGGACCTGGTGGTGCTGTCAA
AAGGAGGGAGGGAGGGGAGGGAGGAAGGGGAGAACGTTGAAGCAGGCTCG
ATGGCGTTGAGTCCCGTTGGCTGGACCGTGGGGAAGAAAGGGGGGGGAGG
AAAGACAAGAGGGACGGGGAGCTTCCCGAGGACGTTCCCATTTTCGGTGG
TAGTCCCTCGACTGTCGCTTGAGGTGTATAGGATGATTTTGTTTTGTTTT
CTGTTTGGGCTCCAGCTGCAGCATCTGGAAGGGATGGAAGGCACATTGTT
GAGGCTTACGGAGGAAGGGCTTGGGGTCCTGAGCCAGTTGCTGAACAATG
AATTGGAGGGCGCGATGGAAAATGGCGCGAATTTCCCTATTTCGAAGGCC
TGTCAGATCTCCGTGGATGCGGCAGCGTTAGCGCTGATGACGTTTAAGTT
GGAAAGATTGCTTGTGGGGGCAGCTGCCAGATTTGGGTCGTTGACAGAGT
CGGCGAGTAGGGGGATCCCGGCATTGGTGAGGGAGGGAAGGAGGGTGCTG
GAGAACACGGGCATTGCGGCGCAGCATTTAGTGTTTGAATTAATGCAGGC
GAAAATCGATGAGTTGTTGATAGGAGGGATTGGATTTGTGGAGTGGGAGG
CGAAGCGGGTCGAGGCAGTACCGAGGCCGTATGTTGAGGATTTGGTGAAT
TATATGCAAG

Synonyms

Publications