|
|
Properties
| Property Name | Value |
| TranscriptId | 603660 |
| Track | FilteredModels2 |
| ProteinId | 603574 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
| scaffold_27 | supercontig | scaffold_27:149912..154779 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_8678 ID=mRNA_8678|Name=jgi.p|Nanoce1779_2|603574|organism=Nannochloropsis oceanica|type=mRNA|length=3676bp ACAGCACCCCTCGACGACCCTCACCTGTCTAAATGGCTCCCGTGCAATCC ACCCTCATCGGTGCCTTGGCCCTGGCCGGCTCCGTCTCTGCCTTTGTGAC CCCTTCCTTTAAGCTGAACGCCGTCCAGCACGCGCGTGCCAACGACGTGC ACATGGCCGTGCCCATCGGGATCAACGGCTTCGGCCGCATCGGTCGCCTT GTTGCCCGTATCGCCGTCAAGGACCCCCAGTGCAACCTCGTCGCTATCAA CACCGGTGCTGATGCCGAGTACATGGCGTACCAGTTCAAATACGACTCTG TGCACGGCCGTTTCGACGGCAAGGTAGACGTGGAGGGTGACACCATCATC ATCGACGGCCAGCGTGTCATGACCACCCACACCCGCAAGCCCGAGGAGAT CGGCTGGGGCAAGCTCGGGGCGACCTACCTGTGCGAGTCCACGGGCGCTT TCTTGACCAAGGAGACCTGCCAGGTGCACATTGACGGTGGCGCCAAGAAG GTGGTCATGTCCGCCCCCGCGAAGGACGACTCCCAGGTCATCGTCATGGG TGTCAACGAGGAGGACTACGTCGGCGCCAACATCCTCTCTTGCGCGTCCT GCACCACCAACGGCCTGGCCCCCATCGTCAAGATCATCAACGACGAGTTC GGCATTGAGGAGGCGCTCATGACCACGGTGCACGCCTTCACCGCCACCCA GATGGTGGTCGACGGGTCCTCCAAGAAGGATTGGCGAGGTGGCCGATCGG CCTCCGTGAACATCATCCCTTCCTCCACCGGTGCCGCCAAGGCTGTAACC AAGGTGATCCCCTCCCTTAAGGGCAAGCTCACCGGCATGGCCTTCCGTGT CCCCGTCCCCGACGTTTCGGTCGTGGACCTGACTGCCCGTCTCTCTAAGC CCACCACCTATGAGGCCATCTGCGCTGCTGTCAAGAAGGCTTCCGAGACC ACTCACAAGGGCGTGGTCGGCTACACTGAGCTTCCCATGGTCAGCCAGGA CTTTGTTTCTGACTCCCGCTCCACTATCTTCGATGCCGGTGCCGGTATTG CGCTCAACCCCCAGTTCGTGAAGCTCGTGGCTTGGTACGACAACGAGTGG GGATACTCTTGCCGTGTGGTTGACCTTATCAAGAAGGTCGCCAAGCACGA CGGTGTTCAGCTCTAAATCTGTTAGTTGCAACAGTAGCAGCAACAGCTGT AGTTTTTGTACGCGCAGTGCCTTGTGCTAGGAGGGAGTAGCAGTAGTAGT AGCAGCAGCAGCAGCAGCGACAATTTTATGTGTAAGGCGTGGTCCTTGTG TGCTTTGTGTCTGCTTTGTCTCTCGTGTGTCAAGAGGCATTCGTAGGGAT TGGGATGGGGCTGCCCTTTTTGATGTTTTCTTCTGCATGTGCAAAATAGT TGTTCTTCTCTTTTTTTTTTCTTCTTTTCGGGGGAGGAATGGAGGGAGGG AGCGGCACTAGTGCGCGGAGAACCCATGTGTGACGTATGCTTTTTGTTTG TGGATGTGGTGAAAATGTAGGAAGGAGAGGGAGGAGAAATAAATCCGTCA CAAACAACAAACTAAAGAGAGGGGGGGAAGACCAACTTTACGGAAAAAAA ATACGTTCACTCCCGAAAAAAACCCGTACAAGACTCGCTTCTTCCTTTCT TCTTCCCTCTTTCTTGACTCTTCTCGCGGTGGTTCTTCTATGTCATTGAC TGCCTGTCGCTCACCACATCTTCCATGAAGGACAGAAGCAGCGAGCGGCT AACACTTGGAGAAAAGAAAAAAATGAAACAATCTCTCAAAACAAGAAAAA ATACCACCCACTTTTCTTTCCTTCCAACATCGTGTTTCTTTGTTACTCCT ATTCTTCCCCTGATCCTGCCGCCCCTCTCTCTATCTCCCTCACCGAAACG AAGACGAGACGGAAAAAGGAACAAAAATACAGACACATTGGTGGACTGAT TCATCTTCCTTCTCATTTCCCTGCATCTCCTGCTGCCGCTGTGCTGCTGC AAGACAGGAGTGCAGAGTGCGGTTGCAATATACTCCTTCCTCTCCTCCCC CCCCCTCTCTCGATGTTCCTCGCCCTCCTTTCTCTCCATCTATTTTCTCT CTGAGGTACCATTCTCTTTTCCTGATTTTCTCCTTTCCTCTCTCCCTCCC TCTCTCCTATCTCTTCCTTTTTCCTTTCTCTACCTCCATAGCTCTCTTTT GCTAGCCTACAACAAAGAGGAAAAAATGACTATCTCTCCGTTTCGTTCTC CTTTTTCTACGGCCCAAGCAAGAGAAAAACGAAAGGAATCAGAAATCGAT ACATAATCTCCTTTCTTCCCTCCCCTCCCTCTTCCTCCCTCACTTCCGAC GAACCGAATGAAAGAAAGGAAAAAAACGACTAAATAATAATTGATATTGA AAATAGTAACAGCAGCCACCATTGCTGCTGCTGCTTCGGCAGCAGCAGCA GCAAGAGACGGTGATTGTGCTTGGGACGTGCCTTGCGCTACCTTACTTGT TATCGACGGTCGACATGTGCACGATCAGGTCCACCAGCCTGTTGGAGTAG CCCCACTCATTGTCATACCACGACACCAGCTTGAAAAACGTCGGGCTCAG GCCGATGCAAGCCCCCGCATCGAAAATGGACGACCGGGAGTCCGTGATGA AGTCACAGCTCACCACATCCTCCTCCGTGTATCCCAACACGCCTTTCATG GACCCTTCACTCGCCGCCTTGATCAGCTTTTTGATCTCGTCCAAGCTCGT CTCCTTCGCGAGCTTCACCGTCAGGTCCACCACAGAGACATCGGCGGTAG GGACACGAAAAGCCATGCCAGTCAACTTCCCGTTCAGCTCCGGGATGACC TTCCCTACGGCCTTGGCTGCACCAGTGGAGGCGGGGATGATGTTGTAGCC GGCGCAACGCCCCGCCCTGTGTGCGTACATTTCGAAAATTAAATCAAGGG CTCGTCCCAGTGGTCGGACATGATTTATGGATCCATTTATTCATGCTTTT TCCCTTCTCGATTGATCCTTACCGCCAGTCCTTGCCTCCCTTGCTCGGGC CATCGACCGTCAGCTGGTTGGCAGTCATGGCATGCACCGTCGTCATGAGC CCCTCCACAATCCCGAAATTATCGTTCAGGACCTTGGCCACAGGGGCCAG GCAATTGGTGGTGCACGACGCATTGGAGACCACGTCCGTGCCGGCCTTAT AGTCTGTGTGGTTGACTCCCATGACGAACATGGGCGTGCTATCCTTCGGC GGGGCCGAGATGATCACCTTCTTGGCGCCTCCCTTCAAGTGGCTCCCGCC CTTCTCAGTGGAGGTGAAGACGCCCGTGGACTCGCACACATAGTCAGCAC CTGCCTCCCCCCACCCGATCTCTGCGGGGTCCTTGGCCTTGTACACCTTG ATCACTTCACCATTTATCACGAGGTTACCGTCCTTGGCCTCTACCGTCCC ATTGAAGCGGCCGTGGACAGAGTCGTACTTAAACTGGTACACCATGTACT CAACGTCCATGAACGGGTCATTGATAGCTGTGACGACGGTCTTGGGGTTT TGCACGGCGGCACGGCAGACAAGGCGGCCGATGCGACCGAAGCCGTTGAT TCCAATTCGGACACGGGTGTCTGCCATTGCTGATGAGAAGGGTTGGGGTG CTTTAAAAGCGAGAAAAGTGTACTGT back to topprotein sequence of jgi.p|Nanoce1779_2|603574 >mRNA_8678-protein ID=mRNA_8678-protein|Name=jgi.p|Nanoce1779_2|603574|organism=Nannochloropsis oceanica|type=polypeptide|length=378bp MAPVQSTLIGALALAGSVSAFVTPSFKLNAVQHARANDVHMAVPIGINGF GRIGRLVARIAVKDPQCNLVAINTGADAEYMAYQFKYDSVHGRFDGKVDV EGDTIIIDGQRVMTTHTRKPEEIGWGKLGATYLCESTGAFLTKETCQVHI DGGAKKVVMSAPAKDDSQVIVMGVNEEDYVGANILSCASCTTNGLAPIVK IINDEFGIEEALMTTVHAFTATQMVVDGSSKKDWRGGRSASVNIIPSSTG AAKAVTKVIPSLKGKLTGMAFRVPVPDVSVVDLTARLSKPTTYEAICAAV KKASETTHKGVVGYTELPMVSQDFVSDSRSTIFDAGAGIALNPQFVKLVA WYDNEWGYSCRVVDLIKKVAKHDGVQL* back to topmRNA from alignment at scaffold_27:149912..154779+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_8678 ID=mRNA_8678|Name=jgi.p|Nanoce1779_2|603574|organism=Nannochloropsis oceanica|type=mRNA|length=4868bp|location=Sequence derived from alignment at scaffold_27:149912..154779+ (Nannochloropsis oceanica) ACAGCACCCCTCGACGACCCTCACCTGTCTAAATGGCTCCCGTGCAATCC
ACCCTCATCGGTGCCTTGGCCCTGGCCGGCTCCGTCTCTGCCTTTGTGAC
CCCTTCCTTTAAGCTGAACGCCGTCCAGCACGCGCGTGCCAACGACGTGC
ACATGGCCGTGCCCATCGGGATCAACGGCTTCGGCCGCATCGGTCGCCTT
GTTGCCCGTATCGCCGTCAAGGACCCCCAGTGCAACCTCGTCGCTATCAA
CACCGGTGCTGATGCCGAGTACATGGCGTACCAGTTCAAATACGACTCTG
TGCACGGCCGTTTCGACGGCAAGGTAGACGTGGAGGGTGACACCATCATC
ATCGACGGCCAGCGTGTCATGACCACCCACACCCGCAAGCCCGAGGAGAT
CGGCTGGGGCAAGCTCGGGGCGACCTACCTGTGCGAGTCCACGGGCGCTT
TCTTGACCAAGGAGACCTGCCAGGTGCACATTGACGGTGGCGCCAAGAAG
GTGGTCATGTCCGCCCCCGCGAAGGACGACTCCCAGGTCATCGTCATGGG
TGTCAACGAGGAGGACTACGTCGGCGCCAACATCCTCTCTTGCGCGTCCT
GCACCACCAACGGCCTGGCCCCCATCGTCAAGATCATCAACGACGAGTTC
GGCATTGAGGAGGCGCTCATGACCACGGTGCACGCCTTCACCGCCACCCA
GATGGTGGTCGACGGGTCCTCCAAGAAGGATTGGCGAGGTGGCCGATCGG
CCTCCGTGAACATCATCCCTTCCTCCACCGGTGCCGCCAAGGCTGTAACC
AAGGTGATCCCCTCCCTTAAGGGCAAGCTCACCGGCATGGCCTTCCGTGT
CCCCGTCCCCGACGTTTCGGTCGTGGACCTGACTGCCCGTCTCTCTAAGC
CCACCACCTATGAGGCCATCTGCGCTGCTGTCAAGAAGGCTTCCGAGACC
ACTCACAAGGGCGTGGTCGGCTACACTGAGCTTCCCATGGTCAGCCAGGA
CTTTGTTTCTGACTCCCGCTCCACTATCTTCGATGCCGGTGCCGGTATTG
CGCTCAACCCCCAGTTCGTGAAGCTCGTGGCTTGGTACGACAACGAGTGG
GGATACTCTTGCCGTGTGGTTGACCTTATCAAGAAGGTCGCCAAGCACGA
CGGTGTTCAGCTCTAAATCTGTTAGTTGCAACAGTAGCAGCAACAGCTGT
AGTTTTTGTACGCGCAGTGCCTTGTGCTAGGAGGGAGTAGCAGTAGTAGT
AGCAGCAGCAGCAGCAGCGACAATTTTATGTGTAAGGCGTGGTCCTTGTG
TGCTTTGTGTCTGCTTTGTCTCTCGTGTGTCAAGAGGCATTCGTAGGGAT
TGGGATGGGGCTGCCCTTTTTGATGTTTTCTTCTGCATGTGCAAAATAGT
TGTTCTTCTCTTTTTTTTTTCTTCTTTTCGGGGGAGGAATGGAGGGAGGG
AGCGGCACTAGTGCGCGGAGAACCCATGTGTGACGTATGCTTTTTGTTTG
TGGATGTGGTGAAAATGTAGGAAGGAGAGGGAGGAGAAATAAATCCGTCA
CAAACAACAAACTAAAGAGAGGGGGGGAAGACCAACTTTACGGAAAAAAA
ATACGTTCACTCCCGAAAAAAACCCGTACAAGACTCGCTTCTTCCTTTCT
TCTTCCCTCTTTCTTGACTCTTCTCGCGGTGGTTCTTCTATGTCATTGAC
TGCCTGTCGCTCACCACATCTTCCATGAAGGACAGAAGCAGCGAGCGGCT
AACACTTGGAGAAAAGAAAAAAATGAAACAATCTCTCAAAACAAGAAAAA
ATACCACCCACTTTTCTTTCCTTCCAACATCGTGTTTCTTTGTTACTCCT
ATTCTTCCCCTGATCCTGCCGCCCCTCTCTCTATCTCCCTCACCGAAACG
AAGACGAGACGGAAAAAGGAACAAAAATACAGACACATTGGTGGACTGAT
TCATCTTCCTTCTCATTTCCCTGCATCTCCTGCTGCCGCTGTGCTGCTGC
AAGACAGGAGTGCAGAGTGCGGTTGCAATATACTCCTTCCTCTCCTCCCC
CCCCCTCTCTCGATGTTCCTCGCCCTCCTTTCTCTCCATCTATTTTCTCT
CTGAGGTACCATTCTCTTTTCCTGATTTTCTCCTTTCCTCTCTCCCTCCC
TCTCTCCTATCTCTTCCTTTTTCCTTTCTCTACCTCCATAGCTCTCTTTT
GCTAGCCTACAACAAAGAGGAAAAAATGACTATCTCTCCGTTTCGTTCTC
CTTTTTCTACGGCCCAAGCAAGAGAAAAACGAAAGGAATCAGAAATCGAT
ACATAATCTCCTTTCTTCCCTCCCCTCCCTCTTCCTCCCTCACTTCCGAC
GAACCGAATGAAAGAAAGGAAAAAAACGACTAAATAATAATTGATATTGA
AAATAGTAACAGCAGCCACCATTGCTGCTGCTGCTTCGGCAGCAGCAGCA
GCAAGAGACGGTGATTGTGCTTGGGACGTGCCTTGCGCTACCTTACTTGT
TATCGACGGTCGACATGTGCACGATCAGGTCCACCAGCCTGTTGGAGTAG
CCCCACTCTTTGGGCAGGGAGGGAAAGGGGGGAGGCAGGGATTGAGAGAG
TGAATGAGTGAGTGAATCAGGAAAAATACACAAGAGGGGGGGAGGAAGGA
AATAGAATATAAACGGAAGACAGGGAGTAGCAGGGGACAAACACGGACTG
TTGAGATGTCACGTACCAGAGAACGGACAGACACATATATAAACAGCAAG
TAAGTACATAAGGAAGTTTATAAATTAAACCGTATGAAAAATCGGGAAAT
AAAAAAATTAACAAAATCGAAAAAAAGTCGATAATCCATATAATCACAAT
CACTCACCATTGTCATACCACGACACCAGCTTGAAAAACGTCGGGCTCAG
GCCGATGCAAGCCCCCGCATCGAAAATGGACGACCGGGAGTCCGTGATGA
AGTCACAGCTCACCACATCCTCCTGTAGTTGGTGGCAGGGGTAGAGAAGA
GGAAGGGGGAGGAAGGGAGAGGATGGAGTGACGTCATTAATTTAACGGCC
GACCAATTCGTGTAATTGACTGAAATGGCAGGAGAGCGGGGATCGAGGCA
ATGAGTGGCCTTAAAAAAAAATGAAACACTCACACACACACACACACACA
CACATTTCTTCACACACATATATTGATACACACACACACATATTGATACA
CACATACACACACATTGATAAACACACACACACATTGATAAACTCACAAA
TACATTGATACTCCCTGCATATCACTTCTTTTTCCTCTTGAAAAGTTGGG
GAGGAGTACATAAAAAGGGTCCTACCGTGCTTTCTCCCCTCCTTCCCTCC
CTCCCCTCTTCCTCACCTCCGTGTATCCCAACACGCCTTTCATGGACCCT
TCACTCGCCGCCTTGATCAGCTTTTTGATCTCGTCCAAGCTCGTCTCCTT
CGCGAGCTTCACCGTCAGGTCCACCACAGAGACATCGGCGGTAGGGACAC
GAAAAGCCATGCCAGTCAACTTCCCGTTCAGCTCCGGGATGACCTTCCCT
ACGGCCTTGGCTGCACCAGTGGAGGCGGGGATGATGTTGTAGCCGGCGCA
ACGCCCCGCCCTGTGTGCGTACATTTCGAAAATTAAATCAAGGGCTCGTC
CCAGTGGTCGGACATGATTTATGGATCCATTTATTCATGCTTTTTCCCTT
CTCGATTGATCCTTACCGCCAGTCCTTGCCTCCCTTGCTCGGGCCATCGA
CCGTCAGCTGGTTGGCAGTCATGGCATGCACCGTCGTCATGAGCCCCTCC
ACAATCCCGAAATTATCGTTCAGGACCTTGGCCACAGGGGCCAGGCAATT
GGTGGTGCACGACGCATTGGAGACCACGTCCGTGCCGGCTGCGGGCGGAG
GGAGGGGGGGAGGGAAAGTGAATGCCCATCACCAGGCTAAAGACAACCGG
AGGGAGGGATGGTAGGAAGGGAGGGCACAAAGGGCTGACTGGACGTACCC
TTATAGTCTGTGTGGTTGACTCCCATGACGAACATGGGCGTGCTATCCTT
CGGCGGGGCCGAGATGATCACCTTCTTGGCGCCTCCCTTCAAGTGGCTCC
CGCCCTTCTCAGTGGAGGTGAAGACGCCCGTGGACTCGCACACATAGTCA
GCACCTGCCTCCCCCCACCCGATCTCTGCGGGGTCCTTGGCCTTGTACAC
CTGTTAGATGGGAAATAAGGGAACAAAGGAGGGGGGCAAGGGAGGGGTGA
GAGAGGAGAAAAAGCAGCTCGTGTGGAGGAACTCCCTCTCTCTCCCTCCT
TCTTAGTCTCCTTGCCTCCATACCTTGATCACTTCACCATTTATCACGAG
GTTACCGTCCTTGGCCTGCATAAGGGGGATATGGATGAAGGGTGAAGTAG
TGAAAAGATGGGGGTTAAAAATGGGACGGGAACTTCGAATTAAGGCCAAC
CCTCCCTCCTTCCCTTCCCTCCCTCCCTTCCTACCTCTACCGTCCCATTG
AAGCGGCCGTGGACAGAGTCGTACTTAAACTGGTACACCATGTACTCAAC
GTCCATGAACGGGTCATTGATAGCTGTGACGACGGTCTTGGGGTTTTGCA
CGGCGGCACGGCAGACAAGGCGGCCGATGCGACCGAAGCCGTTGATTCCA
ATTCGGACACGGGTGTCTGTCGTAAGATAGAGGGATGAGGGGGGGGAAGA
GGATTGATAAACAATAGGAGCGGGTGTGGAATAAGAAATGCCGGACGAGG
ACGAGGATGACGGAACATGTGGAAGTGAACATGGCGCGGGACAAACAGAG
CCAAAGACTTACCTGCCATTGCTGATGAGAAGGGTTGGGGTGCTTTAAAA
GCGAGAAAAGTGTACTGT back to topCoding sequence (CDS) from alignment at scaffold_27:149912..154779+ >mRNA_8678 ID=mRNA_8678|Name=jgi.p|Nanoce1779_2|603574|organism=Nannochloropsis oceanica|type=CDS|length=1134bp|location=Sequence derived from alignment at scaffold_27:149912..154779+ (Nannochloropsis oceanica) ATGGCTCCCGTGCAATCCACCCTCATCGGTGCCTTGGCCCTGGCCGGCTC CGTCTCTGCCTTTGTGACCCCTTCCTTTAAGCTGAACGCCGTCCAGCACG CGCGTGCCAACGACGTGCACATGGCCGTGCCCATCGGGATCAACGGCTTC GGCCGCATCGGTCGCCTTGTTGCCCGTATCGCCGTCAAGGACCCCCAGTG CAACCTCGTCGCTATCAACACCGGTGCTGATGCCGAGTACATGGCGTACC AGTTCAAATACGACTCTGTGCACGGCCGTTTCGACGGCAAGGTAGACGTG GAGGGTGACACCATCATCATCGACGGCCAGCGTGTCATGACCACCCACAC CCGCAAGCCCGAGGAGATCGGCTGGGGCAAGCTCGGGGCGACCTACCTGT GCGAGTCCACGGGCGCTTTCTTGACCAAGGAGACCTGCCAGGTGCACATT GACGGTGGCGCCAAGAAGGTGGTCATGTCCGCCCCCGCGAAGGACGACTC CCAGGTCATCGTCATGGGTGTCAACGAGGAGGACTACGTCGGCGCCAACA TCCTCTCTTGCGCGTCCTGCACCACCAACGGCCTGGCCCCCATCGTCAAG ATCATCAACGACGAGTTCGGCATTGAGGAGGCGCTCATGACCACGGTGCA CGCCTTCACCGCCACCCAGATGGTGGTCGACGGGTCCTCCAAGAAGGATT GGCGAGGTGGCCGATCGGCCTCCGTGAACATCATCCCTTCCTCCACCGGT GCCGCCAAGGCTGTAACCAAGGTGATCCCCTCCCTTAAGGGCAAGCTCAC CGGCATGGCCTTCCGTGTCCCCGTCCCCGACGTTTCGGTCGTGGACCTGA CTGCCCGTCTCTCTAAGCCCACCACCTATGAGGCCATCTGCGCTGCTGTC AAGAAGGCTTCCGAGACCACTCACAAGGGCGTGGTCGGCTACACTGAGCT TCCCATGGTCAGCCAGGACTTTGTTTCTGACTCCCGCTCCACTATCTTCG ATGCCGGTGCCGGTATTGCGCTCAACCCCCAGTTCGTGAAGCTCGTGGCT TGGTACGACAACGAGTGGGGATACTCTTGCCGTGTGGTTGACCTTATCAA GAAGGTCGCCAAGCACGACGGTGTTCAGCTCTAA back to top
|