jgi.p|Nanoce1779_2|603565, mRNA_8676 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|603565
Unique NamemRNA_8676
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length552
Alignment locationscaffold_27:141403..142348 -

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Properties
Property NameValue
TranscriptId603651
TrackFilteredModels2
ProteinId603565
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_27supercontigscaffold_27:141403..142348 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|603565gene_8676Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|603565mRNA_8676-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_8676CDS_8676Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_8676 ID=mRNA_8676|Name=jgi.p|Nanoce1779_2|603565|organism=Nannochloropsis oceanica|type=mRNA|length=552bp
AGACAGCCCCAGCTACGCGCATCGGCCGTCACCATGGCTATGTCCTCGGC
GCACGCCGCCACCCTCAAGAATGTTGCCGGCAAAAGCGCGGTGCAGTTGT
ACCGGGACTGTCTCCGGGTCGCTGACCACATAGCCAGCAAGAGCCCCAAG
GGCATCGCCTTGCGGAATATGCTTCGGTCGGAGTTCAAAAAGCACGCCAA
CGTAGAAGACGGCAAGCAGGTGGAGCAGCTTAAGATGAACGCGGCAAGAG
GGCTGGCCAACTACCTACTGTACGAGTCAGGAAGCAAAGAGCCCAAGATC
CGCGCCCGCATGAACAAAACCACCGCCGACATGATCAAGCAATGCATGGA
CAACGCCAAGCGAGAACGAGAACGGAAAGAAAAGGTCGAAAAAGGAGAGG
GTGCAGAATTAGAGCATGTCCACGTGAAAATCTAAGAAGAGGTCGATACA
TTGATACGAGATGTGTAGTAGTGTAATGTGTGTGGGGTTGACCACGGGGG
AAAGATATGAGGGAGACAAGGGTTCAAAATGAAAACCAGAAAATATGATA
AA
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protein sequence of jgi.p|Nanoce1779_2|603565

>mRNA_8676-protein ID=mRNA_8676-protein|Name=jgi.p|Nanoce1779_2|603565|organism=Nannochloropsis oceanica|type=polypeptide|length=134bp
MAMSSAHAATLKNVAGKSAVQLYRDCLRVADHIASKSPKGIALRNMLRSE
FKKHANVEDGKQVEQLKMNAARGLANYLLYESGSKEPKIRARMNKTTADM
IKQCMDNAKRERERKEKVEKGEGAELEHVHVKI*
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mRNA from alignment at scaffold_27:141403..142348-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_8676 ID=mRNA_8676|Name=jgi.p|Nanoce1779_2|603565|organism=Nannochloropsis oceanica|type=mRNA|length=946bp|location=Sequence derived from alignment at scaffold_27:141403..142348- (Nannochloropsis oceanica)
AGACAGCCCCAGCTACGCGCATCGGCCGTCACCATGGCTATGTCCTCGGC
GCACGCCGCCACCCTCAAGAATGTTGCCGGCAAAAGCGCGGTGCAGGTAA
GACGACAGCTTTTGTGTGCGTGAACAGAAGTTCTACATCAAAACGCACGT
ATCCGTGACTCATCGCTCTCTACGCATGATACAGTTGTACCGGGACTGTC
TCCGGGTCGCTGACCACATAGCCAGCAAGGTGAGCATATTATTTAAAGCC
CTTGGCTTGATTTCTGTCGAGCGTTCATGTGGCCTACGGAGCTCATTATT
CCTTTTCCTTGACGTCCCCTCTTTTCCACTTCCATCTTCAGAGCCCCAAG
GGCATCGCCTTGCGGAATATGCTTCGGTCGGAGTTCAAAAAGCACGCCAA
CGTAGAAGACGGCAAGCAGGTGGAGCAGCTTAAGATGAAGTGAGTCGTAG
TTGTTTCAGGAAAGGTTCTAAAAGTGTCAACACAAGACATTTATCACTTT
CTTTTCCTCAACACATGACAGCGCGGCAAGAGGGCTGGCCAACTACCTAC
TGTACGAGTCAGGAAGGTGCGTTTTTCTTAATTATTTTGTACAATACAAT
TTCTACTGGGTCCCTGATGTCACTTTCTCATTTGATCGCATGCTACACCC
CTCCTTCCTTCTCTCCCTCCCCTTGCAGCAAAGAGCCCAAGATCCGCGCC
CGCATGAACAAAACCACCGCCGACATGATCAAGCAATGCATGGACAACGC
CAAGCGAGAACGAGAACGGAAAGAAAAGGTCGAAAAAGGAGAGGGTGCAG
AATTAGAGCATGTCCACGTGAAAATCTAAGAAGAGGTCGATACATTGATA
CGAGATGTGTAGTAGTGTAATGTGTGTGGGGTTGACCACGGGGGAAAGAT
ATGAGGGAGACAAGGGTTCAAAATGAAAACCAGAAAATATGATAAA
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Coding sequence (CDS) from alignment at scaffold_27:141403..142348-

>mRNA_8676 ID=mRNA_8676|Name=jgi.p|Nanoce1779_2|603565|organism=Nannochloropsis oceanica|type=CDS|length=2010bp|location=Sequence derived from alignment at scaffold_27:141403..142348- (Nannochloropsis oceanica)
CAAAGAGCCCAAGATCCGCGCCCGCATGAACAAAACCACCGCCGACATGA
TCAAGCAATGCATGGACAACGCCAAGCGAGAACGAGAACGGAAAGAAAAG
GTCGAAAAAGGAGAGGGTGCAGAATTAGAGCATGTCCACGTGAAAATCTA
ACGCGGCAAGAGGGCTGGCCAACTACCTACTGTACGAGTCAGGAAGAGCC
CCAAGGGCATCGCCTTGCGGAATATGCTTCGGTCGGAGTTCAAAAAGCAC
GCCAACGTAGAAGACGGCAAGCAGGTGGAGCAGCTTAAGATGAATTGTAC
CGGGACTGTCTCCGGGTCGCTGACCACATAGCCAGCAAGATGGCTATGTC
CTCGGCGCACGCCGCCACCCTCAAGAATGTTGCCGGCAAAAGCGCGGTGC
AGCAAAGAGCCCAAGATCCGCGCCCGCATGAACAAAACCACCGCCGACAT
GATCAAGCAATGCATGGACAACGCCAAGCGAGAACGAGAACGGAAAGAAA
AGGTCGAAAAAGGAGAGGGTGCAGAATTAGAGCATGTCCACGTGAAAATC
TAACGCGGCAAGAGGGCTGGCCAACTACCTACTGTACGAGTCAGGAAGAG
CCCCAAGGGCATCGCCTTGCGGAATATGCTTCGGTCGGAGTTCAAAAAGC
ACGCCAACGTAGAAGACGGCAAGCAGGTGGAGCAGCTTAAGATGAATTGT
ACCGGGACTGTCTCCGGGTCGCTGACCACATAGCCAGCAAGATGGCTATG
TCCTCGGCGCACGCCGCCACCCTCAAGAATGTTGCCGGCAAAAGCGCGGT
GCAGCAAAGAGCCCAAGATCCGCGCCCGCATGAACAAAACCACCGCCGAC
ATGATCAAGCAATGCATGGACAACGCCAAGCGAGAACGAGAACGGAAAGA
AAAGGTCGAAAAAGGAGAGGGTGCAGAATTAGAGCATGTCCACGTGAAAA
TCTAACGCGGCAAGAGGGCTGGCCAACTACCTACTGTACGAGTCAGGAAG
AGCCCCAAGGGCATCGCCTTGCGGAATATGCTTCGGTCGGAGTTCAAAAA
GCACGCCAACGTAGAAGACGGCAAGCAGGTGGAGCAGCTTAAGATGAATT
GTACCGGGACTGTCTCCGGGTCGCTGACCACATAGCCAGCAAGATGGCTA
TGTCCTCGGCGCACGCCGCCACCCTCAAGAATGTTGCCGGCAAAAGCGCG
GTGCAGCAAAGAGCCCAAGATCCGCGCCCGCATGAACAAAACCACCGCCG
ACATGATCAAGCAATGCATGGACAACGCCAAGCGAGAACGAGAACGGAAA
GAAAAGGTCGAAAAAGGAGAGGGTGCAGAATTAGAGCATGTCCACGTGAA
AATCTAACGCGGCAAGAGGGCTGGCCAACTACCTACTGTACGAGTCAGGA
AGAGCCCCAAGGGCATCGCCTTGCGGAATATGCTTCGGTCGGAGTTCAAA
AAGCACGCCAACGTAGAAGACGGCAAGCAGGTGGAGCAGCTTAAGATGAA
TTGTACCGGGACTGTCTCCGGGTCGCTGACCACATAGCCAGCAAGATGGC
TATGTCCTCGGCGCACGCCGCCACCCTCAAGAATGTTGCCGGCAAAAGCG
CGGTGCAGCAAAGAGCCCAAGATCCGCGCCCGCATGAACAAAACCACCGC
CGACATGATCAAGCAATGCATGGACAACGCCAAGCGAGAACGAGAACGGA
AAGAAAAGGTCGAAAAAGGAGAGGGTGCAGAATTAGAGCATGTCCACGTG
AAAATCTAACGCGGCAAGAGGGCTGGCCAACTACCTACTGTACGAGTCAG
GAAGAGCCCCAAGGGCATCGCCTTGCGGAATATGCTTCGGTCGGAGTTCA
AAAAGCACGCCAACGTAGAAGACGGCAAGCAGGTGGAGCAGCTTAAGATG
AATTGTACCGGGACTGTCTCCGGGTCGCTGACCACATAGCCAGCAAGATG
GCTATGTCCTCGGCGCACGCCGCCACCCTCAAGAATGTTGCCGGCAAAAG
CGCGGTGCAG
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Synonyms
Publications