jgi.p|Nanoce1779_2|603557, mRNA_8674 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|603557
Unique Name	mRNA_8674
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2948
Alignment location	scaffold_27:136190..139137 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	603643
Track	FilteredModels2
ProteinId	603557

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_27	supercontig	scaffold_27:136190..139137 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|603557	gene_8674	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|603557	mRNA_8674-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_8674	CDS_8674	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_27:136190..139137+
coding sequence from alignment at scaffold_27:136190..139137+

mRNA sequence

>mRNA_8674 ID=mRNA_8674|Name=jgi.p|Nanoce1779_2|603557|organism=Nannochloropsis oceanica|type=mRNA|length=2948bp
AGGAGGACACCCTTTGCCTGCCATCTCAAGCAAGCCCAGCAAGCCATGAG
CTCCAGTGCCACAGCCCCTGCCGAAGACTTCCTGCTGACCCCTTTGAACG
TGGTCCAAGACTGCTTCCTGCATTCCCCCAACACCACCACGTCCAGTACA
CCCTCTCCACACGCCCGTGTTGCAGATGCCTACCGAAGATTCTTGCATAC
ACACCCCAAGGCGCTTTCAACCATACCCTTGATCCAGCCGTCCACCTGGC
CCCAAGACTCGGCTCCTGGCGGGCCCCTCCACAACCACTGCCTCGTCCGT
TTCCGGGGCATGGTCACCGACATGCTCGACCCGCAATTTTTTGTTGGTGC
ACACAAAGACCCAAGCACGGGTAAGCTGCTTTGCACGATGTATCGGGATA
CGTTGGCGGCGGAGGAAGTGGAGGCAATGTCTGTCGGCGGGGAATGGCAG
CCGCACCAAACCATGGAACGCCGTCCATTGATTTTGGGGCCTATCCCTGG
AGAGGCTGCTTGGGTGACGATGACGAACAGCAGGAGTAAAAGTAGCACCA
GCGGCAGCAGCAGCAGCAGCAATAAAAGGCCTTTACCCAGTGAGAGCGCG
GGCGCCGGAGGGGGATATGCCGTGGTCGCTGGCACCACACCGACTACGAT
GAAAGGAGACACACAGGCCAAAGGACGGCCCAAAATGGCCCGGAGGGAAG
ACAGCTCCGGCGAAAGTCATGCAATGATGGCTGTGGACGATTCCTGTTCC
ACCACCAGCACCACTCCTACAACATCTCCTTCCTCCTCCACCTCCCTGCC
CCCTCCCAAGCCCAAAGCAGCGACGACATCCGTCGCTTCTCCTCCCACTC
CTTTTCGTTGCTTGACCTACTTCTACGACAGCGAAGACGACGGACCACAC
CCTCCCAAGCTTAACGAGGCATTGGATGTGCTTGCGGTCCTGTCCTACAC
CACTGCCGCAGAGAAAGAAAAGATGATGTCGATGATGGATGGACGAGGAG
GGGAAGGTGCCGAGGGAGGAGCAGTCGGGATGGACGAGGGCGACCCTGAC
GCAGCCATAGATAATTTGATGCTCGTTCTTGAGCCACGGTTGCACGTCCT
ACTCTGGGAAAGGGCAAGTCTCCTTCTCCCTCCTCTCAACACCGATGCCG
CAGCAGCAGCTGCTGCTGCTAGCGACAAGTCCTCCTCGGCTTCTGTTCAA
GCTTTCACCGGATCGGCCTCCCCAGCCCCGCGTTCCCTTTCTCTCCTCAT
TCCGGCCAACCATACCATCATTCAAGCACGTACTGAGCTACTCACTCACT
TCACTAACTCCCTAGCCGGGGATGCTCTCGCGGCCGAATACCTTCTTCTC
TCCCTCCTCTCCCGCGTGCGTCTCCGGACCACCGCTGCTGCTGCCACTGC
AGGTGGAGCAATAGCAGCAGCAGCAGGCGAAGTAGTCGTTGGACCCTTGT
CTTTGAATCTGAGCCGCGTTTTCATCCCAGGATTTGCCCAGGGACTGCAG
GAGTTGTTGGGGAGCGTGGTAGCCCGCGCCGTGAGGATGGAAGTAGACCT
GCCGTCCCTCAGCGATGCGACCAAGTGGATCCCCCGTAAGGATTATACCA
GCAACATGCTGCTATCTTCTACGTCCTTACAGGTGAGTCCAGGCACGGCT
TTGATACTGGACGAAACGGGCTTGGAGACAGGGAGGCTGGATGGGGTAGG
TGTGACAAATGTTCGATGCGTGAAGAAGCTGATCGAGGAGCAGAAGACCA
TGTGTAGTTTTGGGTTTTACGAGCTGGAGTTTGAGGCAGATTGTCCAATA
CTCGTAGTCTCAAAAAGTAAGTCCATATTTTCGGGAGGGGCGCTCTGTGA
AGTGCCATTGGTACCTGCTGCTGCTGCTGCTGCTATTTCGGTAGTTTTAG
CTGGAGCTGCAGGAGGAGCAGGAGGAGCAGAAGGAGCAGCAGGAGCAGCG
ACACCAGCAGTGCTACCATCGTCCTTGGATAGGGTGGCAACACATGAGAC
ATTGTCCCACCTTCGTCGGTATCTAGCTGCTTTGTCTGGTCTACCGGTGG
AGATTGACAAGGCGCTGGCAAGCCAGGCAGAGAATGAGTACGTGAGTCTG
AGGGGGGGAGGGACGGAGGAGGGAAAGCTTTTGACGTGGGAAGATTTAGG
ACGGTGGTTGGAGATGACGAGGTTGTTGTGTGCGAGCGAGGGAGGCAGTG
AAACGTGTGGGATGAGGCATTGGGAGAGGATGAAGCAGATGGAGGCGGAG
AGGAGGAGAAGGGTGAAAGGGACTCAAGGAGGAAATGTGGCGCAGTAGAT
TGAGAATGAGGGACAATAAGGGTGGAAGGAAGGGAAAGAAAATGGTCGGA
TCCGTGGTTGGGAGATGAATGTGTAGTGTCAGTACAGGCACAGCATAAAA
GGGAACAAGACAGTGCTGCTGGGCATAAAAATGGCAAGGATGGTGAAGAA
ATCACTGATAAAGACCCTGCTTATTCTTGGTTGCTCCTGCAGTTGTCTTC
ACACTTTTAGGTTGGGACATCTCTTCCACGCTCTCACATCAGTGACTTTC
ATGTCGTATTCCACTTTACACCCACACTCACGTCTTTTCCTCTTTCGCGC
CTTGCAGAATCCTCACGCGATCCGCTCTATACAATGTCTTCTCAATTGCA
TGCAAATGCTAAAAACCTATCTATTTATTAATGCTTGTCCTGGCTTTAGT
TTCTCAACTCGCAAGTTAGGCCTCCTTCTTGCAACTTCCCTTCTGCACCG
ACACCACTTTCACATCAGGCTTGCTCTGGTCAAAAATTTCCTTCGTATTC
GGATAAATGAGACGGAGAATCACCGCCCCCCGCGGCAGCTTCGACACATC
AACCACATTCTCCCGTCCCTGGGGCATGCGTAATGGGTCCTTGGTCAACA
CCACCCTGTACGACAGAGCCGTCAAACTTCCGTCTCCCCCGCCCCCCC

protein sequence of jgi.p|Nanoce1779_2|603557

>mRNA_8674-protein ID=mRNA_8674-protein|Name=jgi.p|Nanoce1779_2|603557|organism=Nannochloropsis oceanica|type=polypeptide|length=751bp
MSSSATAPAEDFLLTPLNVVQDCFLHSPNTTTSSTPSPHARVADAYRRFL
HTHPKALSTIPLIQPSTWPQDSAPGGPLHNHCLVRFRGMVTDMLDPQFFV
GAHKDPSTGKLLCTMYRDTLAAEEVEAMSVGGEWQPHQTMERRPLILGPI
PGEAAWVTMTNSRSKSSTSGSSSSSNKRPLPSESAGAGGGYAVVAGTTPT
TMKGDTQAKGRPKMARREDSSGESHAMMAVDDSCSTTSTTPTTSPSSSTS
LPPPKPKAATTSVASPPTPFRCLTYFYDSEDDGPHPPKLNEALDVLAVLS
YTTAAEKEKMMSMMDGRGGEGAEGGAVGMDEGDPDAAIDNLMLVLEPRLH
VLLWERASLLLPPLNTDAAAAAAAASDKSSSASVQAFTGSASPAPRSLSL
LIPANHTIIQARTELLTHFTNSLAGDALAAEYLLLSLLSRVRLRTTAAAA
TAGGAIAAAAGEVVVGPLSLNLSRVFIPGFAQGLQELLGSVVARAVRMEV
DLPSLSDATKWIPRKDYTSNMLLSSTSLQVSPGTALILDETGLETGRLDG
VGVTNVRCVKKLIEEQKTMCSFGFYELEFEADCPILVVSKSKSIFSGGAL
CEVPLVPAAAAAAISVVLAGAAGGAGGAEGAAGAATPAVLPSSLDRVATH
ETLSHLRRYLAALSGLPVEIDKALASQAENEYVSLRGGGTEEGKLLTWED
LGRWLEMTRLLCASEGGSETCGMRHWERMKQMEAERRRRVKGTQGGNVAQ
*

mRNA from alignment at scaffold_27:136190..139137+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_8674 ID=mRNA_8674|Name=jgi.p|Nanoce1779_2|603557|organism=Nannochloropsis oceanica|type=mRNA|length=2948bp|location=Sequence derived from alignment at scaffold_27:136190..139137+ (Nannochloropsis oceanica)
AGGAGGACACCCTTTGCCTGCCATCTCAAGCAAGCCCAGCAAGCCATGAG
CTCCAGTGCCACAGCCCCTGCCGAAGACTTCCTGCTGACCCCTTTGAACG
TGGTCCAAGACTGCTTCCTGCATTCCCCCAACACCACCACGTCCAGTACA
CCCTCTCCACACGCCCGTGTTGCAGATGCCTACCGAAGATTCTTGCATAC
ACACCCCAAGGCGCTTTCAACCATACCCTTGATCCAGCCGTCCACCTGGC
CCCAAGACTCGGCTCCTGGCGGGCCCCTCCACAACCACTGCCTCGTCCGT
TTCCGGGGCATGGTCACCGACATGCTCGACCCGCAATTTTTTGTTGGTGC
ACACAAAGACCCAAGCACGGGTAAGCTGCTTTGCACGATGTATCGGGATA
CGTTGGCGGCGGAGGAAGTGGAGGCAATGTCTGTCGGCGGGGAATGGCAG
CCGCACCAAACCATGGAACGCCGTCCATTGATTTTGGGGCCTATCCCTGG
AGAGGCTGCTTGGGTGACGATGACGAACAGCAGGAGTAAAAGTAGCACCA
GCGGCAGCAGCAGCAGCAGCAATAAAAGGCCTTTACCCAGTGAGAGCGCG
GGCGCCGGAGGGGGATATGCCGTGGTCGCTGGCACCACACCGACTACGAT
GAAAGGAGACACACAGGCCAAAGGACGGCCCAAAATGGCCCGGAGGGAAG
ACAGCTCCGGCGAAAGTCATGCAATGATGGCTGTGGACGATTCCTGTTCC
ACCACCAGCACCACTCCTACAACATCTCCTTCCTCCTCCACCTCCCTGCC
CCCTCCCAAGCCCAAAGCAGCGACGACATCCGTCGCTTCTCCTCCCACTC
CTTTTCGTTGCTTGACCTACTTCTACGACAGCGAAGACGACGGACCACAC
CCTCCCAAGCTTAACGAGGCATTGGATGTGCTTGCGGTCCTGTCCTACAC
CACTGCCGCAGAGAAAGAAAAGATGATGTCGATGATGGATGGACGAGGAG
GGGAAGGTGCCGAGGGAGGAGCAGTCGGGATGGACGAGGGCGACCCTGAC
GCAGCCATAGATAATTTGATGCTCGTTCTTGAGCCACGGTTGCACGTCCT
ACTCTGGGAAAGGGCAAGTCTCCTTCTCCCTCCTCTCAACACCGATGCCG
CAGCAGCAGCTGCTGCTGCTAGCGACAAGTCCTCCTCGGCTTCTGTTCAA
GCTTTCACCGGATCGGCCTCCCCAGCCCCGCGTTCCCTTTCTCTCCTCAT
TCCGGCCAACCATACCATCATTCAAGCACGTACTGAGCTACTCACTCACT
TCACTAACTCCCTAGCCGGGGATGCTCTCGCGGCCGAATACCTTCTTCTC
TCCCTCCTCTCCCGCGTGCGTCTCCGGACCACCGCTGCTGCTGCCACTGC
AGGTGGAGCAATAGCAGCAGCAGCAGGCGAAGTAGTCGTTGGACCCTTGT
CTTTGAATCTGAGCCGCGTTTTCATCCCAGGATTTGCCCAGGGACTGCAG
GAGTTGTTGGGGAGCGTGGTAGCCCGCGCCGTGAGGATGGAAGTAGACCT
GCCGTCCCTCAGCGATGCGACCAAGTGGATCCCCCGTAAGGATTATACCA
GCAACATGCTGCTATCTTCTACGTCCTTACAGGTGAGTCCAGGCACGGCT
TTGATACTGGACGAAACGGGCTTGGAGACAGGGAGGCTGGATGGGGTAGG
TGTGACAAATGTTCGATGCGTGAAGAAGCTGATCGAGGAGCAGAAGACCA
TGTGTAGTTTTGGGTTTTACGAGCTGGAGTTTGAGGCAGATTGTCCAATA
CTCGTAGTCTCAAAAAGTAAGTCCATATTTTCGGGAGGGGCGCTCTGTGA
AGTGCCATTGGTACCTGCTGCTGCTGCTGCTGCTATTTCGGTAGTTTTAG
CTGGAGCTGCAGGAGGAGCAGGAGGAGCAGAAGGAGCAGCAGGAGCAGCG
ACACCAGCAGTGCTACCATCGTCCTTGGATAGGGTGGCAACACATGAGAC
ATTGTCCCACCTTCGTCGGTATCTAGCTGCTTTGTCTGGTCTACCGGTGG
AGATTGACAAGGCGCTGGCAAGCCAGGCAGAGAATGAGTACGTGAGTCTG
AGGGGGGGAGGGACGGAGGAGGGAAAGCTTTTGACGTGGGAAGATTTAGG
ACGGTGGTTGGAGATGACGAGGTTGTTGTGTGCGAGCGAGGGAGGCAGTG
AAACGTGTGGGATGAGGCATTGGGAGAGGATGAAGCAGATGGAGGCGGAG
AGGAGGAGAAGGGTGAAAGGGACTCAAGGAGGAAATGTGGCGCAGTAGAT
TGAGAATGAGGGACAATAAGGGTGGAAGGAAGGGAAAGAAAATGGTCGGA
TCCGTGGTTGGGAGATGAATGTGTAGTGTCAGTACAGGCACAGCATAAAA
GGGAACAAGACAGTGCTGCTGGGCATAAAAATGGCAAGGATGGTGAAGAA
ATCACTGATAAAGACCCTGCTTATTCTTGGTTGCTCCTGCAGTTGTCTTC
ACACTTTTAGGTTGGGACATCTCTTCCACGCTCTCACATCAGTGACTTTC
ATGTCGTATTCCACTTTACACCCACACTCACGTCTTTTCCTCTTTCGCGC
CTTGCAGAATCCTCACGCGATCCGCTCTATACAATGTCTTCTCAATTGCA
TGCAAATGCTAAAAACCTATCTATTTATTAATGCTTGTCCTGGCTTTAGT
TTCTCAACTCGCAAGTTAGGCCTCCTTCTTGCAACTTCCCTTCTGCACCG
ACACCACTTTCACATCAGGCTTGCTCTGGTCAAAAATTTCCTTCGTATTC
GGATAAATGAGACGGAGAATCACCGCCCCCCGCGGCAGCTTCGACACATC
AACCACATTCTCCCGTCCCTGGGGCATGCGTAATGGGTCCTTGGTCAACA
CCACCCTGTACGACAGAGCCGTCAAACTTCCGTCTCCCCCGCCCCCCC

Coding sequence (CDS) from alignment at scaffold_27:136190..139137+

>mRNA_8674 ID=mRNA_8674|Name=jgi.p|Nanoce1779_2|603557|organism=Nannochloropsis oceanica|type=CDS|length=2253bp|location=Sequence derived from alignment at scaffold_27:136190..139137+ (Nannochloropsis oceanica)
ATGAGCTCCAGTGCCACAGCCCCTGCCGAAGACTTCCTGCTGACCCCTTT
GAACGTGGTCCAAGACTGCTTCCTGCATTCCCCCAACACCACCACGTCCA
GTACACCCTCTCCACACGCCCGTGTTGCAGATGCCTACCGAAGATTCTTG
CATACACACCCCAAGGCGCTTTCAACCATACCCTTGATCCAGCCGTCCAC
CTGGCCCCAAGACTCGGCTCCTGGCGGGCCCCTCCACAACCACTGCCTCG
TCCGTTTCCGGGGCATGGTCACCGACATGCTCGACCCGCAATTTTTTGTT
GGTGCACACAAAGACCCAAGCACGGGTAAGCTGCTTTGCACGATGTATCG
GGATACGTTGGCGGCGGAGGAAGTGGAGGCAATGTCTGTCGGCGGGGAAT
GGCAGCCGCACCAAACCATGGAACGCCGTCCATTGATTTTGGGGCCTATC
CCTGGAGAGGCTGCTTGGGTGACGATGACGAACAGCAGGAGTAAAAGTAG
CACCAGCGGCAGCAGCAGCAGCAGCAATAAAAGGCCTTTACCCAGTGAGA
GCGCGGGCGCCGGAGGGGGATATGCCGTGGTCGCTGGCACCACACCGACT
ACGATGAAAGGAGACACACAGGCCAAAGGACGGCCCAAAATGGCCCGGAG
GGAAGACAGCTCCGGCGAAAGTCATGCAATGATGGCTGTGGACGATTCCT
GTTCCACCACCAGCACCACTCCTACAACATCTCCTTCCTCCTCCACCTCC
CTGCCCCCTCCCAAGCCCAAAGCAGCGACGACATCCGTCGCTTCTCCTCC
CACTCCTTTTCGTTGCTTGACCTACTTCTACGACAGCGAAGACGACGGAC
CACACCCTCCCAAGCTTAACGAGGCATTGGATGTGCTTGCGGTCCTGTCC
TACACCACTGCCGCAGAGAAAGAAAAGATGATGTCGATGATGGATGGACG
AGGAGGGGAAGGTGCCGAGGGAGGAGCAGTCGGGATGGACGAGGGCGACC
CTGACGCAGCCATAGATAATTTGATGCTCGTTCTTGAGCCACGGTTGCAC
GTCCTACTCTGGGAAAGGGCAAGTCTCCTTCTCCCTCCTCTCAACACCGA
TGCCGCAGCAGCAGCTGCTGCTGCTAGCGACAAGTCCTCCTCGGCTTCTG
TTCAAGCTTTCACCGGATCGGCCTCCCCAGCCCCGCGTTCCCTTTCTCTC
CTCATTCCGGCCAACCATACCATCATTCAAGCACGTACTGAGCTACTCAC
TCACTTCACTAACTCCCTAGCCGGGGATGCTCTCGCGGCCGAATACCTTC
TTCTCTCCCTCCTCTCCCGCGTGCGTCTCCGGACCACCGCTGCTGCTGCC
ACTGCAGGTGGAGCAATAGCAGCAGCAGCAGGCGAAGTAGTCGTTGGACC
CTTGTCTTTGAATCTGAGCCGCGTTTTCATCCCAGGATTTGCCCAGGGAC
TGCAGGAGTTGTTGGGGAGCGTGGTAGCCCGCGCCGTGAGGATGGAAGTA
GACCTGCCGTCCCTCAGCGATGCGACCAAGTGGATCCCCCGTAAGGATTA
TACCAGCAACATGCTGCTATCTTCTACGTCCTTACAGGTGAGTCCAGGCA
CGGCTTTGATACTGGACGAAACGGGCTTGGAGACAGGGAGGCTGGATGGG
GTAGGTGTGACAAATGTTCGATGCGTGAAGAAGCTGATCGAGGAGCAGAA
GACCATGTGTAGTTTTGGGTTTTACGAGCTGGAGTTTGAGGCAGATTGTC
CAATACTCGTAGTCTCAAAAAGTAAGTCCATATTTTCGGGAGGGGCGCTC
TGTGAAGTGCCATTGGTACCTGCTGCTGCTGCTGCTGCTATTTCGGTAGT
TTTAGCTGGAGCTGCAGGAGGAGCAGGAGGAGCAGAAGGAGCAGCAGGAG
CAGCGACACCAGCAGTGCTACCATCGTCCTTGGATAGGGTGGCAACACAT
GAGACATTGTCCCACCTTCGTCGGTATCTAGCTGCTTTGTCTGGTCTACC
GGTGGAGATTGACAAGGCGCTGGCAAGCCAGGCAGAGAATGAGTACGTGA
GTCTGAGGGGGGGAGGGACGGAGGAGGGAAAGCTTTTGACGTGGGAAGAT
TTAGGACGGTGGTTGGAGATGACGAGGTTGTTGTGTGCGAGCGAGGGAGG
CAGTGAAACGTGTGGGATGAGGCATTGGGAGAGGATGAAGCAGATGGAGG
CGGAGAGGAGGAGAAGGGTGAAAGGGACTCAAGGAGGAAATGTGGCGCAG
TAG

Synonyms

Publications