jgi.p|Nanoce1779_2|559854, mRNA_8673 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|559854
Unique NamemRNA_8673
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1114
Alignment locationscaffold_27:134831..136058 -

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Properties
Property NameValue
TranscriptId559940
TrackFilteredModels2
ProteinId559854
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_27supercontigscaffold_27:134831..136058 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|559854gene_8673Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|559854mRNA_8673-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_8673CDS_8673Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_8673 ID=mRNA_8673|Name=jgi.p|Nanoce1779_2|559854|organism=Nannochloropsis oceanica|type=mRNA|length=1114bp
CATGCTCACCTCTTTGCATCGCACCACTCACACCTCACACACTCTTTCTA
CACACAGAGCCGCTGCCGCTGTCGGGAGATGATGGCAGCAAATTATCCTT
CCGCGTCCACGTACGGTGCCGTGGAGGATCCGCGTGTGCATGATCGTACG
GCATTGCTCAAGGGCACCATTCAGCTGACGAACGAGACGAATGAGCTGGC
TGCGGGCATTGGGGAAAACCTGCGGGAACAACGGACCTCCTTGGAGGACG
GGTCGACACGCATACGAGAGATGAAGGGGTTTGCAGGGGAGGCACGGCGG
CTTCTCAATCAAATGGCACGGCGTGCAGCTTGCCACCGTGTCACATTGTG
GGGCATCATTGTGTTCTTGCTGGTGTGTATCGGCTTGACCGTCTATCGAC
TTCTTACAAATCGCGGGCACATCATATGAGAGCAGAAAGCGAGGGCCAGG
GAGGGGAGACAAGAAAGGCAATTTTGTCCAACCATCGTACATTTAGAAAA
TAATGTAAAACGATAGTAGCAGAGGGAGTGCGTAAAACAGGTGCATGGAT
GAGGACGACATTTTGTCATGCTTTTCTTGGCCTACGATTTGTTTGTTCTT
TTGTGCTTCCTAAATTGATTTGGTTCAGCATTGGAGAGAAGAGAAATGAA
GACGCAAACACAGCATGCTTTTTCATGTATGATTACTTGATGGGATCGTA
AATGCCGCCATAGATAGACATGGAGAAAAATCGACATTTGCGCAGCTTGT
GGGTGTCGGAAGCGGATGTCTTCGTGAGCGATGGAGTGGACAGAGCGAAA
GCATTTCGTTGTATGATACAAATAAATTTCTTTGTCTACATACGCTCGTT
CTACCCTCCTTCCTCCTCCCAACGTCCCTCTTTTCCTCCTATTTCTGTCC
ATGCAAGCGGTCGAAAGCTTTGAATCGCTCAAGACTTTCCATCGACGTGG
TGGACCGACAAGACACCAGAGCCTGCTCCACATCCTTCCAGCTGATCGCT
GGCGGGGGAAGAGGAGAAAGAGGAGGGAGAGAAAGAAAGGATGTCTTACC
ACTACTACTGGACGGCTGCTGCTGCTGCTGCTGCTGTTGCTGTTGCCTGG
CCAAAGCATGCAAC
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protein sequence of jgi.p|Nanoce1779_2|559854

>mRNA_8673-protein ID=mRNA_8673-protein|Name=jgi.p|Nanoce1779_2|559854|organism=Nannochloropsis oceanica|type=polypeptide|length=117bp
MMAANYPSASTYGAVEDPRVHDRTALLKGTIQLTNETNELAAGIGENLRE
QRTSLEDGSTRIREMKGFAGEARRLLNQMARRAACHRVTLWGIIVFLLVC
IGLTVYRLLTNRGHII*
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mRNA from alignment at scaffold_27:134831..136058-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_8673 ID=mRNA_8673|Name=jgi.p|Nanoce1779_2|559854|organism=Nannochloropsis oceanica|type=mRNA|length=1228bp|location=Sequence derived from alignment at scaffold_27:134831..136058- (Nannochloropsis oceanica)
CATGCTCACCTCTTTGCATCGCACCACTCACACCTCACACACTCTTTCTA
CACACAGAGCCGCTGCCGCTGTCGGGAGATGATGGCAGCAAATTATCCTT
CCGCGTCCACGTACGGTGCCGTGGAGGATCCGCGTGTGGTAAGTCCTCAT
CTCTTTCCGACCTCCCCACCCCGGCCATGCCGCTTGTCTGACTAGTGTTG
TCGTCTTGCGGCACGAATTAACGGTCATGCTCACACACCTATACTCTCAC
AGCATGATCGTACGGCATTGCTCAAGGGCACCATTCAGCTGACGAACGAG
ACGAATGAGCTGGCTGCGGGCATTGGGGAAAACCTGCGGGAACAACGGAC
CTCCTTGGAGGACGGGTCGACACGCATACGAGAGATGAAGGGGTTTGCAG
GGGAGGCACGGCGGCTTCTCAATCAAATGGCACGGCGTGCAGCTTGCCAC
CGTGTCACATTGTGGGGCATCATTGTGTTCTTGCTGGTGTGTATCGGCTT
GACCGTCTATCGACTTCTTACAAATCGCGGGCACATCATATGAGAGCAGA
AAGCGAGGGCCAGGGAGGGGAGACAAGAAAGGCAATTTTGTCCAACCATC
GTACATTTAGAAAATAATGTAAAACGATAGTAGCAGAGGGAGTGCGTAAA
ACAGGTGCATGGATGAGGACGACATTTTGTCATGCTTTTCTTGGCCTACG
ATTTGTTTGTTCTTTTGTGCTTCCTAAATTGATTTGGTTCAGCATTGGAG
AGAAGAGAAATGAAGACGCAAACACAGCATGCTTTTTCATGTATGATTAC
TTGATGGGATCGTAAATGCCGCCATAGATAGACATGGAGAAAAATCGACA
TTTGCGCAGCTTGTGGGTGTCGGAAGCGGATGTCTTCGTGAGCGATGGAG
TGGACAGAGCGAAAGCATTTCGTTGTATGATACAAATAAATTTCTTTGTC
TACATACGCTCGTTCTACCCTCCTTCCTCCTCCCAACGTCCCTCTTTTCC
TCCTATTTCTGTCCATGCAAGCGGTCGAAAGCTTTGAATCGCTCAAGACT
TTCCATCGACGTGGTGGACCGACAAGACACCAGAGCCTGCTCCACATCCT
TCCAGCTGATCGCTGGCGGGGGAAGAGGAGAAAGAGGAGGGAGAGAAAGA
AAGGATGTCTTACCACTACTACTGGACGGCTGCTGCTGCTGCTGCTGCTG
TTGCTGTTGCCTGGCCAAAGCATGCAAC
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Coding sequence (CDS) from alignment at scaffold_27:134831..136058-

>mRNA_8673 ID=mRNA_8673|Name=jgi.p|Nanoce1779_2|559854|organism=Nannochloropsis oceanica|type=CDS|length=702bp|location=Sequence derived from alignment at scaffold_27:134831..136058- (Nannochloropsis oceanica)
CATGATCGTACGGCATTGCTCAAGGGCACCATTCAGCTGACGAACGAGAC
GAATGAGCTGGCTGCGGGCATTGGGGAAAACCTGCGGGAACAACGGACCT
CCTTGGAGGACGGGTCGACACGCATACGAGAGATGAAGGGGTTTGCAGGG
GAGGCACGGCGGCTTCTCAATCAAATGGCACGGCGTGCAGCTTGCCACCG
TGTCACATTGTGGGGCATCATTGTGTTCTTGCTGGTGTGTATCGGCTTGA
CCGTCTATCGACTTCTTACAAATCGCGGGCACATCATATGAATGATGGCA
GCAAATTATCCTTCCGCGTCCACGTACGGTGCCGTGGAGGATCCGCGTGT
GCATGATCGTACGGCATTGCTCAAGGGCACCATTCAGCTGACGAACGAGA
CGAATGAGCTGGCTGCGGGCATTGGGGAAAACCTGCGGGAACAACGGACC
TCCTTGGAGGACGGGTCGACACGCATACGAGAGATGAAGGGGTTTGCAGG
GGAGGCACGGCGGCTTCTCAATCAAATGGCACGGCGTGCAGCTTGCCACC
GTGTCACATTGTGGGGCATCATTGTGTTCTTGCTGGTGTGTATCGGCTTG
ACCGTCTATCGACTTCTTACAAATCGCGGGCACATCATATGAATGATGGC
AGCAAATTATCCTTCCGCGTCCACGTACGGTGCCGTGGAGGATCCGCGTG
TG
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Synonyms
Publications