jgi.p|Nanoce1779_2|603546, mRNA_8671 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|603546
Unique NamemRNA_8671
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1379
Alignment locationscaffold_27:128895..130286 -

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Properties
Property NameValue
TranscriptId603632
TrackFilteredModels2
ProteinId603546
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_27supercontigscaffold_27:128895..130286 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|603546gene_8671Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|603546mRNA_8671-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_8671CDS_8671Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_8671 ID=mRNA_8671|Name=jgi.p|Nanoce1779_2|603546|organism=Nannochloropsis oceanica|type=mRNA|length=1379bp
GTGGAGGAAGTAGAGAGAAAGGGCAGCGGGGAAGGAGGAGTCCGGTTGCA
AGCATGGGATGCAGAGCACGGAGTAGTCGTAGGAGAGGCCTGCCCCCCCT
CCTCCTCGTTCTCCCTCCCTTCCACTTCGTCCCTGTTTGCATGTGGTGAA
GGCGTCATAGCTAGTGGTAGTCCTTCTACCGATAAGGTGGCTGCATGGAG
GGTGGAGTCAAGAGAAGGAGGAGGAGAAGGCACTGGGCTAAGACGTGCCT
TGGGGAAACTCGCTGTAACCACTGCTGCTGCTGCGGCATGTGCTACCGGT
ACTGTTGCTGCTCCCCTTGTGACAATGACATTTAAGAGCAGTGAGGTCGG
TTGGGTTTGTCAGGAAAGAGAAGAAGACGCAACAGGGGCAGCAGCAGGAG
CTGCAGCAGCAGCAGCGGGTGGTCTGACGCCGGATGATGCAGTCGATCAG
TTACTCCAATTGCTCTTCGCAGCAGAGCAGGAACAGCAACAGCAGTACCA
GCACCAGCACCAGCACCAGCAGAATGGAAAGGCTGATACGAAGAAGAAGG
AGGAGGAAGAGAGAAACGGTAGTGGCAAAAGCTGCAGCAGCAGTAAGAAG
AGAAAGCGTGCCAAGCTCACAGGAGCCGTGCTTCTGGCCCGTACCCCTGT
AGCAACACAGACAGCCCTGTATGTTGCTTCTCTTTGTCTTGCCGAGGAAG
ATGAGGAAGGGGGGGAGGGGATTTTGGAGGGAGGGAGGGGAAAGAAGGCA
CGGCGCAGGAAAAGCAGAGAGGGGCAGGGGGAGGGAGCGACGGAGGGGCG
GAAACAGGAACGACAGGCGGGGTTATGGCGTCTCCTACAGGCCTTGATCG
AAGCGGGAAAATATCCATTAAGGGAGCATCCTACTCTCCTGCTGCAGTTG
CTGCAGCGAGGGAGAAAGGAAGTGGTAGCAGCAGCATTGGCAGGGCCCGG
TGACTTGTCTGAAAAATCCATCGTCCAGTCACTACACGCGGTGTTACGTA
GCCCCTCCTCCCTTCCTCCCTCTTCTATCACCATCACCTCGCAAGAACAG
CAGCAGCAACAGCAGCAGCAGCTGAACAATGGGGTGTACGCACGCGAAGT
TTTTAAGCTCGTCGGGCTTGCTGTTTGTCGTCCTTGCTGTCCTGTCTTCC
TTCGGGCTGCCTTGTCTGAAGGGATGGATGGACCCAGCGCAGCGCTACTG
CTGGTGCTACTGCGGTCACTGCTGGAGAAAACCATAGATGGCAAAGCAGG
CGGTGGTGGGAGGGAGGAAGAGTGTATTTTGACATGGTTAGAAGCGCTTT
TGGATGCGAAGTTTGTCAGTATGGTCGTTCAGGGAAGTAGGGAGGGAAGG
AAAGGGAGGTTGTGAGGAAAGTGTTGATG
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protein sequence of jgi.p|Nanoce1779_2|603546

>mRNA_8671-protein ID=mRNA_8671-protein|Name=jgi.p|Nanoce1779_2|603546|organism=Nannochloropsis oceanica|type=polypeptide|length=347bp
MTFKSSEVGWVCQEREEDATGAAAGAAAAAAGGLTPDDAVDQLLQLLFAA
EQEQQQQYQHQHQHQQNGKADTKKKEEEERNGSGKSCSSSKKRKRAKLTG
AVLLARTPVATQTALYVASLCLAEEDEEGGEGILEGGRGKKARRRKSREG
QGEGATEGRKQERQAGLWRLLQALIEAGKYPLREHPTLLLQLLQRGRKEV
VAAALAGPGDLSEKSIVQSLHAVLRSPSSLPPSSITITSQEQQQQQQQQL
NNGVYAREVFKLVGLAVCRPCCPVFLRAALSEGMDGPSAALLLVLLRSLL
EKTIDGKAGGGGREEECILTWLEALLDAKFVSMVVQGSREGRKGRL*
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mRNA from alignment at scaffold_27:128895..130286-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_8671 ID=mRNA_8671|Name=jgi.p|Nanoce1779_2|603546|organism=Nannochloropsis oceanica|type=mRNA|length=1392bp|location=Sequence derived from alignment at scaffold_27:128895..130286- (Nannochloropsis oceanica)
GTGGAGGAAGTAGAGAGAAAGGGCAGCGGGGAAGGAGGAGTCCGGTTGCA
AGCATGGGATGCAGAGCACGGAGTAGTCGTAGGAGAGGCCTGCCCCCCCT
CCTCCTCGTTCTCCCTCCCTTCCACTTCGTCCCTGTTTGCATGTGGTGAA
GGCGTCATAGCTAGTGGTAGTCCTTCTACCGATAAGGTGGCTGCATGGAG
GGTGGAGTCAAGAGAAGGAGGAGGAGAAGGCACTGGGCTAAGACGTGCCT
TGGGGAAACTCGCTGTAACCACTGCTGCTGCTGCGGCATGTGCTACCGGT
ACTGTTGCTGCTCCCCTTGTGACAATGACATTTAAGAGCAGTGAGGTCGG
TTGGGTTTGTCAGGAAAGAGAAGAAGACGCAACAGGGGCAGCAGCAGGAG
CTGCAGCAGCAGCAGCGGGTGGTCTGACGCCGGATGATGCAGTCGATCAG
TTACTCCAATTGCTCTTCGCAGCAGAGCAGGAACAGCAACAGCAGTACCA
GCACCAGCACCAGCACCAGCAGAATGGAAAGGCTGATACGAAGAAGAAGG
AGGAGGAAGAGAGAAACGGTAGTGGCAAAAGCTGCAGCAGCAGTAAGAAG
AGAAAGCGTGCCAAGCTCACAGGAGCCGTGCTTCTGGCCCGTACCCCTGT
AGCAACACAGACAGCCCTGTATGTTGCTTCTCTTTGTCTTGCCGAGGAAG
ATGAGGAAGGGGGGGAGGGGATTTTGGAGGGAGGGAGGGGAAAGAAGGCA
CGGCGCAGGAAAAGCAGAGAGGGGCAGGGGGAGGGAGCGACGGAGGGGCG
GAAACAGGAACGACAGGCGGGGTTATGGCGTCTCCTACAGGCCTTGATCG
AAGCGGGAAAATATCCATTAAGGGAGCATCCTACTCTCCTGCTGCAGTTG
CTGCAGCGAGGGAGAAAGGAAGTGGTAGCAGCAGCATTGGCAGGGCCCGG
TGACTTGTCTGAAAAATCCATCGTCCAGTCACTACACGCGGTGTTACGTA
GCCCCTCCTCCCTTCCTCCCTCTTCTATCACCATCACCTCGCAAGAACAG
CAGCAGCAACAGCAGCAGCAGCTGAACAATGGGGTGTACGCACGCGAAGT
TTTTAAGCTCGTCGGGCTTGCTGTTTGTCGTCCTTGCTGTCCTGTCTTCC
TTCGGGCTGCCTTGTCTGAAGGGATGGATGGACCCAGCGCAGCGCTACTG
CTGGTGCTACTGCGGTCACTGCTGGAGAAAACCATAGATGGCAAAGCAGG
CGGTGGTGGGAGGGAGGAAGAGTGTATTTTGACATGGTTAGAAGCGCTTT
TGGATGCGAAGTTTGTCAGTATGGTCGTTCAGGGAAGTAGGGAGGGAGGG
CAGGGAGGGAAGGAAAGGGAGGTTGTGAGGAAAGTGTTGATG
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Coding sequence (CDS) from alignment at scaffold_27:128895..130286-

>mRNA_8671 ID=mRNA_8671|Name=jgi.p|Nanoce1779_2|603546|organism=Nannochloropsis oceanica|type=CDS|length=2082bp|location=Sequence derived from alignment at scaffold_27:128895..130286- (Nannochloropsis oceanica)
AGGGAGGGAAGGAAAGGGAGGTTGTGAATGACATTTAAGAGCAGTGAGGT
CGGTTGGGTTTGTCAGGAAAGAGAAGAAGACGCAACAGGGGCAGCAGCAG
GAGCTGCAGCAGCAGCAGCGGGTGGTCTGACGCCGGATGATGCAGTCGAT
CAGTTACTCCAATTGCTCTTCGCAGCAGAGCAGGAACAGCAACAGCAGTA
CCAGCACCAGCACCAGCACCAGCAGAATGGAAAGGCTGATACGAAGAAGA
AGGAGGAGGAAGAGAGAAACGGTAGTGGCAAAAGCTGCAGCAGCAGTAAG
AAGAGAAAGCGTGCCAAGCTCACAGGAGCCGTGCTTCTGGCCCGTACCCC
TGTAGCAACACAGACAGCCCTGTATGTTGCTTCTCTTTGTCTTGCCGAGG
AAGATGAGGAAGGGGGGGAGGGGATTTTGGAGGGAGGGAGGGGAAAGAAG
GCACGGCGCAGGAAAAGCAGAGAGGGGCAGGGGGAGGGAGCGACGGAGGG
GCGGAAACAGGAACGACAGGCGGGGTTATGGCGTCTCCTACAGGCCTTGA
TCGAAGCGGGAAAATATCCATTAAGGGAGCATCCTACTCTCCTGCTGCAG
TTGCTGCAGCGAGGGAGAAAGGAAGTGGTAGCAGCAGCATTGGCAGGGCC
CGGTGACTTGTCTGAAAAATCCATCGTCCAGTCACTACACGCGGTGTTAC
GTAGCCCCTCCTCCCTTCCTCCCTCTTCTATCACCATCACCTCGCAAGAA
CAGCAGCAGCAACAGCAGCAGCAGCTGAACAATGGGGTGTACGCACGCGA
AGTTTTTAAGCTCGTCGGGCTTGCTGTTTGTCGTCCTTGCTGTCCTGTCT
TCCTTCGGGCTGCCTTGTCTGAAGGGATGGATGGACCCAGCGCAGCGCTA
CTGCTGGTGCTACTGCGGTCACTGCTGGAGAAAACCATAGATGGCAAAGC
AGGCGGTGGTGGGAGGGAGGAAGAGTGTATTTTGACATGGTTAGAAGCGC
TTTTGGATGCGAAGTTTGTCAGTATGGTCGTTCAGGGAAGTAGGGAGGGA
AGGAAAGGGAGGTTGTGAATGACATTTAAGAGCAGTGAGGTCGGTTGGGT
TTGTCAGGAAAGAGAAGAAGACGCAACAGGGGCAGCAGCAGGAGCTGCAG
CAGCAGCAGCGGGTGGTCTGACGCCGGATGATGCAGTCGATCAGTTACTC
CAATTGCTCTTCGCAGCAGAGCAGGAACAGCAACAGCAGTACCAGCACCA
GCACCAGCACCAGCAGAATGGAAAGGCTGATACGAAGAAGAAGGAGGAGG
AAGAGAGAAACGGTAGTGGCAAAAGCTGCAGCAGCAGTAAGAAGAGAAAG
CGTGCCAAGCTCACAGGAGCCGTGCTTCTGGCCCGTACCCCTGTAGCAAC
ACAGACAGCCCTGTATGTTGCTTCTCTTTGTCTTGCCGAGGAAGATGAGG
AAGGGGGGGAGGGGATTTTGGAGGGAGGGAGGGGAAAGAAGGCACGGCGC
AGGAAAAGCAGAGAGGGGCAGGGGGAGGGAGCGACGGAGGGGCGGAAACA
GGAACGACAGGCGGGGTTATGGCGTCTCCTACAGGCCTTGATCGAAGCGG
GAAAATATCCATTAAGGGAGCATCCTACTCTCCTGCTGCAGTTGCTGCAG
CGAGGGAGAAAGGAAGTGGTAGCAGCAGCATTGGCAGGGCCCGGTGACTT
GTCTGAAAAATCCATCGTCCAGTCACTACACGCGGTGTTACGTAGCCCCT
CCTCCCTTCCTCCCTCTTCTATCACCATCACCTCGCAAGAACAGCAGCAG
CAACAGCAGCAGCAGCTGAACAATGGGGTGTACGCACGCGAAGTTTTTAA
GCTCGTCGGGCTTGCTGTTTGTCGTCCTTGCTGTCCTGTCTTCCTTCGGG
CTGCCTTGTCTGAAGGGATGGATGGACCCAGCGCAGCGCTACTGCTGGTG
CTACTGCGGTCACTGCTGGAGAAAACCATAGATGGCAAAGCAGGCGGTGG
TGGGAGGGAGGAAGAGTGTATTTTGACATGGTTAGAAGCGCTTTTGGATG
CGAAGTTTGTCAGTATGGTCGTTCAGGGAAGT
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Synonyms
Publications