jgi.p|Nanoce1779_2|532828, mRNA_8670 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|532828
Unique NamemRNA_8670
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length276
Alignment locationscaffold_27:125466..125741 +

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Properties
Property NameValue
TranscriptId532914
TrackFilteredModels2
ProteinId532828
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_27supercontigscaffold_27:125466..125741 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|532828gene_8670Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|532828mRNA_8670-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_8670CDS_8670Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_8670 ID=mRNA_8670|Name=jgi.p|Nanoce1779_2|532828|organism=Nannochloropsis oceanica|type=mRNA|length=276bp
ATGGCCGCCCAGCAAGCCCAAGCAGCCGCCGCCACCGCTGCTGCTGCTGC
AGCTGCTGCTGCCCGTTCTTTGCCGGACGCCTGGTATTACCGCGACCCAC
ACGGAAAGATCCAAGGGCCTTTCAAAACTAGCGACATGCGTCAATGGCAC
GAGGCTGGATATTTTAAACCAGGACTTTGCATGCGTTTGGGAGACCAAGG
GCGAGGCCTTCCCGACGATTTCCGGCCCCTATCCCTCCTCTATTCAAACT
TGTCCGAAGCCTTCCTCCGTCCTCCC
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protein sequence of jgi.p|Nanoce1779_2|532828

>mRNA_8670-protein ID=mRNA_8670-protein|Name=jgi.p|Nanoce1779_2|532828|organism=Nannochloropsis oceanica|type=polypeptide|length=92bp
MAAQQAQAAAATAAAAAAAAARSLPDAWYYRDPHGKIQGPFKTSDMRQWH
EAGYFKPGLCMRLGDQGRGLPDDFRPLSLLYSNLSEAFLRPP
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mRNA from alignment at scaffold_27:125466..125741+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_8670 ID=mRNA_8670|Name=jgi.p|Nanoce1779_2|532828|organism=Nannochloropsis oceanica|type=mRNA|length=276bp|location=Sequence derived from alignment at scaffold_27:125466..125741+ (Nannochloropsis oceanica)
ATGGCCGCCCAGCAAGCCCAAGCAGCCGCCGCCACCGCTGCTGCTGCTGC
AGCTGCTGCTGCCCGTTCTTTGCCGGACGCCTGGTATTACCGCGACCCAC
ACGGAAAGATCCAAGGGCCTTTCAAAACTAGCGACATGCGTCAATGGCAC
GAGGCTGGATATTTTAAACCAGGACTTTGCATGCGTTTGGGAGACCAAGG
GCGAGGCCTTCCCGACGATTTCCGGCCCCTATCCCTCCTCTATTCAAACT
TGTCCGAAGCCTTCCTCCGTCCTCCC
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Coding sequence (CDS) from alignment at scaffold_27:125466..125741+

>mRNA_8670 ID=mRNA_8670|Name=jgi.p|Nanoce1779_2|532828|organism=Nannochloropsis oceanica|type=CDS|length=276bp|location=Sequence derived from alignment at scaffold_27:125466..125741+ (Nannochloropsis oceanica)
ATGGCCGCCCAGCAAGCCCAAGCAGCCGCCGCCACCGCTGCTGCTGCTGC
AGCTGCTGCTGCCCGTTCTTTGCCGGACGCCTGGTATTACCGCGACCCAC
ACGGAAAGATCCAAGGGCCTTTCAAAACTAGCGACATGCGTCAATGGCAC
GAGGCTGGATATTTTAAACCAGGACTTTGCATGCGTTTGGGAGACCAAGG
GCGAGGCCTTCCCGACGATTTCCGGCCCCTATCCCTCCTCTATTCAAACT
TGTCCGAAGCCTTCCTCCGTCCTCCC
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Synonyms
Publications