jgi.p|Nanoce1779_2|627284, mRNA_867 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|627284
Unique NamemRNA_867
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1158
Alignment locationscaffold_2:621171..622832 -

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Properties
Property NameValue
TranscriptId627370
TrackFilteredModels2
ProteinId627284
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_2supercontigscaffold_2:621171..622832 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|627284gene_867Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|627284mRNA_867-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_867CDS_867Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_867 ID=mRNA_867|Name=jgi.p|Nanoce1779_2|627284|organism=Nannochloropsis oceanica|type=mRNA|length=1158bp
ATGGTGGGCTCAACGATACGCGCTGTCCACGAGGACTTTACCGGGCTTGT
GCATCAACTTAAAGCCGCGTGGCTGAATGACGACAACCTTGCCTTACCCA
AGGGGGAGTTACAGGAGCTCGTCACGGAGGCAGCAGTCGCTTTGATAGAA
TATAAGGGTCTAGCACGGGAGAGCGCAGTAGCGGTGGAGTGCTGCCGGGC
CGAGATGCAAGCCAAGAAGCGGGAGGTGGACGAGCGACATCTACAGCTTC
AAAATCTGCTGTATGAGAAAGATCACCTGCAACGGACCATCCAAACTCTG
CGCGACTTTCCCTTGAAAGAGCTAGCCAAGATGGAGCGGGAGGAAGGTGT
GCCACTCCTACCTGGCTTGACCGAAGGAGCGGATGGGGAAGGCCGACTCC
TTTCAATGGAGGAACACCGTCAAAACATGGAGACCCTCCGCGCAGAGAAA
GAAACGCGTCTGAGACTGCATCAAGAGCATGCCGATGCCCAAACCAAGCG
TGCGGCGCTTGCGGAGGAGTTAAGCAAATTGCGCGACATGCTCGGCACGA
CCCTTCCGCGTCAGATCGAAGAGTTAGACGCCCTCTGTAGAGGTATTCAG
GAGCGCATGCCCGACATCCCTGTCGCTGTTTCTTTTGGTGGTTTTTCTGT
GGATGATTTGAGAGCATTACCGCAAGCTTTATTCATTTTGTTGGGGAGGC
TGCATGCATATGCACAGGCTTTTGACCCGGAGGAAAGCCAGGTGTCGGTA
TCTATAATCGCTTGTGCTTCGCAAGAACAAGAAGGGACTCTCCTCCCTCC
CTCCCTCGTGGTTGTGGGCACGGAAGCAGCGCTGTTGGTGAGTGCCGCAT
ACACATCGACGTGCATTTTCAATCGGTTGAGAGTAAGACTCAGGGCCCAA
CGGCTGCTGGACAAGGTTTTAACAAATCTGAATTTGAATCCCCGGGAGGC
AGGGAAGGAGGGAGGGATAAGAGTAGGAGCAGGTGGCGCCTGGACCGTCG
CTTCGTTTGTGGAGGTGAGCTTGGCAGCGGTATTGGGGGAGGAGGAGGAA
GGAAGAGAAGCGGGTATCAGGGATGACCCCTTCGCAGAGGTGTCGTGTGG
AGTGCACGGGGCAGAGGGGGGGGGGGGGGGGGAGGGAGGGAAGAGGAGGC
GATTGTGA
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protein sequence of jgi.p|Nanoce1779_2|627284

>mRNA_867-protein ID=mRNA_867-protein|Name=jgi.p|Nanoce1779_2|627284|organism=Nannochloropsis oceanica|type=polypeptide|length=386bp
MVGSTIRAVHEDFTGLVHQLKAAWLNDDNLALPKGELQELVTEAAVALIE
YKGLARESAVAVECCRAEMQAKKREVDERHLQLQNLLYEKDHLQRTIQTL
RDFPLKELAKMEREEGVPLLPGLTEGADGEGRLLSMEEHRQNMETLRAEK
ETRLRLHQEHADAQTKRAALAEELSKLRDMLGTTLPRQIEELDALCRGIQ
ERMPDIPVAVSFGGFSVDDLRALPQALFILLGRLHAYAQAFDPEESQVSV
SIIACASQEQEGTLLPPSLVVVGTEAALLVSAAYTSTCIFNRLRVRLRAQ
RLLDKVLTNLNLNPREAGKEGGIRVGAGGAWTVASFVEVSLAAVLGEEEE
GREAGIRDDPFAEVSCGVHGAEGGGGGEGGKRRRL*
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mRNA from alignment at scaffold_2:621171..622832-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_867 ID=mRNA_867|Name=jgi.p|Nanoce1779_2|627284|organism=Nannochloropsis oceanica|type=mRNA|length=1662bp|location=Sequence derived from alignment at scaffold_2:621171..622832- (Nannochloropsis oceanica)
ATGGTGGGCTCAACGATACGCGCTGTCCACGAGGACTTTACCGGGCTTGT
GCATCAACTTAAAGCCGCGTGGCTGAATGACGACAACCTTGCCTTACCCA
AGGGGGAGTTACAGGAGCTCGTCACGGAGGCAGCAGTCGCTTTGATAGAA
TATAAGGGTCTAGCACGGGAGAGCGCAGTAGCGGTGGAGTGCTGCCGGGC
CGAGATGCAAGCCAAGAAGCGGGAGGTGGACGAGCGACATCTACAGCTTC
AAAATCTGCTGTATGAGAAAGATCACCTGCAACGGACCATCCAAACTCTG
CGCGACTTTCCCTTGAAAGAGCTAGCCAAGATGGAGCGGGAGGAAGGTGT
GCCACTCCTACCTGGCTTGACCGAAGGAGCGGATGGGGAAGGCCGACTCC
TTTCAATGGAGGAACACCGTCAAAACATGGAGACCCTCCGCGCAGAGAAA
GAAACGCGTCTGAGACTGCATCAAGAGCATGCCGATGCCCAAACCAAGCG
TGCGGCGCTTGCGGAGGAGTTAAGCAAATTGCGCGACATGCTCGGCACGA
CCCTTCCGCGTCAGATCGAAGAGTTAGACGCCCTCTGTAGAGGTATTCAG
GAGCGCATGCCCGACATCCCTGTCGCTGTTTCTTTTGGTGGTTTTTCTGT
GGATGATTTGAGAGCATTACCGCAAGCTTTATTCATTTTGTTGGGGAGGC
TGCATGCATATGCACAGGCTTTTGACCCGGAGGAAAGCCAGGTGTCGGTA
TCTATAATCGCTTGTGCTTCGCAAGAACAAGAAGGGACTCTCCTCCCTCC
CTCCCTCGTGGTTGTGGGCACGGAAGCAGCGCTGTTGGTGAGTAAGCAGG
CAGGGAGTAGTGGGATGGAGGTGGATGGGGAGGAAGGAGAGGACGGAGGG
GTTGGGACGGCAGTAGTTACAGTCGTGGATACCCGGGCCATTAAGCTAGA
ATTTTCACCGTTGGAGGGCGAAGAGAAGATGGGGGAAGATGTACAGAAGG
ACGTCCTCCTCTTTTACTTCGCGATGGGCACAAGAGAATTGCTCGTGGCT
GCCCCGGGGCGTCATCCACACGCCCTGGTCAACCTCCTTCCCGGGGACAC
TGGCGGAGTCTCCCCTTCCTCCTCTTCCTCCTCCTCCTCATCCTTCATCG
CCCCTACCTCCTCATTCTCCTCCTCCTCGTCGTCGACACTCCTCAAACCG
ACCAAAAAGCGTCGGACTTCGACCGCTAAGAAAACCAGTGGCAGCAGCAG
CAACAGCATCAGTATCGCAGGGCATCCAATGGCCTTCATGTGGCTTTCCT
GGTTAGGAGGGACATCACCCTTTCCCCCTCATTTAATGGATTTAGGTGCC
GCATACACATCGACGTGCATTTTCAATCGGTTGAGAGTAAGACTCAGGGC
CCAACGGCTGCTGGACAAGGTTTTAACAAATCTGAATTTGAATCCCCGGG
AGGCAGGGAAGGAGGGAGGGATAAGAGTAGGAGCAGGTGGCGCCTGGACC
GTCGCTTCGTTTGTGGAGGTGAGCTTGGCAGCGGTATTGGGGGAGGAGGA
GGAAGGAAGAGAAGCGGGTATCAGGGATGACCCCTTCGCAGAGGTGTCGT
GTGGAGTGCACGGGGCAGAGGGGGGGGGGGGGGGGGAGGGAGGGAAGAGG
AGGCGATTGTGA
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Coding sequence (CDS) from alignment at scaffold_2:621171..622832-

>mRNA_867 ID=mRNA_867|Name=jgi.p|Nanoce1779_2|627284|organism=Nannochloropsis oceanica|type=CDS|length=2316bp|location=Sequence derived from alignment at scaffold_2:621171..622832- (Nannochloropsis oceanica)
GTGCCGCATACACATCGACGTGCATTTTCAATCGGTTGAGAGTAAGACTC
AGGGCCCAACGGCTGCTGGACAAGGTTTTAACAAATCTGAATTTGAATCC
CCGGGAGGCAGGGAAGGAGGGAGGGATAAGAGTAGGAGCAGGTGGCGCCT
GGACCGTCGCTTCGTTTGTGGAGGTGAGCTTGGCAGCGGTATTGGGGGAG
GAGGAGGAAGGAAGAGAAGCGGGTATCAGGGATGACCCCTTCGCAGAGGT
GTCGTGTGGAGTGCACGGGGCAGAGGGGGGGGGGGGGGGGGAGGGAGGGA
AGAGGAGGCGATTGTGAATGGTGGGCTCAACGATACGCGCTGTCCACGAG
GACTTTACCGGGCTTGTGCATCAACTTAAAGCCGCGTGGCTGAATGACGA
CAACCTTGCCTTACCCAAGGGGGAGTTACAGGAGCTCGTCACGGAGGCAG
CAGTCGCTTTGATAGAATATAAGGGTCTAGCACGGGAGAGCGCAGTAGCG
GTGGAGTGCTGCCGGGCCGAGATGCAAGCCAAGAAGCGGGAGGTGGACGA
GCGACATCTACAGCTTCAAAATCTGCTGTATGAGAAAGATCACCTGCAAC
GGACCATCCAAACTCTGCGCGACTTTCCCTTGAAAGAGCTAGCCAAGATG
GAGCGGGAGGAAGGTGTGCCACTCCTACCTGGCTTGACCGAAGGAGCGGA
TGGGGAAGGCCGACTCCTTTCAATGGAGGAACACCGTCAAAACATGGAGA
CCCTCCGCGCAGAGAAAGAAACGCGTCTGAGACTGCATCAAGAGCATGCC
GATGCCCAAACCAAGCGTGCGGCGCTTGCGGAGGAGTTAAGCAAATTGCG
CGACATGCTCGGCACGACCCTTCCGCGTCAGATCGAAGAGTTAGACGCCC
TCTGTAGAGGTATTCAGGAGCGCATGCCCGACATCCCTGTCGCTGTTTCT
TTTGGTGGTTTTTCTGTGGATGATTTGAGAGCATTACCGCAAGCTTTATT
CATTTTGTTGGGGAGGCTGCATGCATATGCACAGGCTTTTGACCCGGAGG
AAAGCCAGGTGTCGGTATCTATAATCGCTTGTGCTTCGCAAGAACAAGAA
GGGACTCTCCTCCCTCCCTCCCTCGTGGTTGTGGGCACGGAAGCAGCGCT
GTTGGTGAGTGCCGCATACACATCGACGTGCATTTTCAATCGGTTGAGAG
TAAGACTCAGGGCCCAACGGCTGCTGGACAAGGTTTTAACAAATCTGAAT
TTGAATCCCCGGGAGGCAGGGAAGGAGGGAGGGATAAGAGTAGGAGCAGG
TGGCGCCTGGACCGTCGCTTCGTTTGTGGAGGTGAGCTTGGCAGCGGTAT
TGGGGGAGGAGGAGGAAGGAAGAGAAGCGGGTATCAGGGATGACCCCTTC
GCAGAGGTGTCGTGTGGAGTGCACGGGGCAGAGGGGGGGGGGGGGGGGGA
GGGAGGGAAGAGGAGGCGATTGTGAATGGTGGGCTCAACGATACGCGCTG
TCCACGAGGACTTTACCGGGCTTGTGCATCAACTTAAAGCCGCGTGGCTG
AATGACGACAACCTTGCCTTACCCAAGGGGGAGTTACAGGAGCTCGTCAC
GGAGGCAGCAGTCGCTTTGATAGAATATAAGGGTCTAGCACGGGAGAGCG
CAGTAGCGGTGGAGTGCTGCCGGGCCGAGATGCAAGCCAAGAAGCGGGAG
GTGGACGAGCGACATCTACAGCTTCAAAATCTGCTGTATGAGAAAGATCA
CCTGCAACGGACCATCCAAACTCTGCGCGACTTTCCCTTGAAAGAGCTAG
CCAAGATGGAGCGGGAGGAAGGTGTGCCACTCCTACCTGGCTTGACCGAA
GGAGCGGATGGGGAAGGCCGACTCCTTTCAATGGAGGAACACCGTCAAAA
CATGGAGACCCTCCGCGCAGAGAAAGAAACGCGTCTGAGACTGCATCAAG
AGCATGCCGATGCCCAAACCAAGCGTGCGGCGCTTGCGGAGGAGTTAAGC
AAATTGCGCGACATGCTCGGCACGACCCTTCCGCGTCAGATCGAAGAGTT
AGACGCCCTCTGTAGAGGTATTCAGGAGCGCATGCCCGACATCCCTGTCG
CTGTTTCTTTTGGTGGTTTTTCTGTGGATGATTTGAGAGCATTACCGCAA
GCTTTATTCATTTTGTTGGGGAGGCTGCATGCATATGCACAGGCTTTTGA
CCCGGAGGAAAGCCAGGTGTCGGTATCTATAATCGCTTGTGCTTCGCAAG
AACAAGAAGGGACTCTCCTCCCTCCCTCCCTCGTGGTTGTGGGCACGGAA
GCAGCGCTGTTGGTGA
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Synonyms
Publications