jgi.p|Nanoce1779_2|603539, mRNA_8669 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|603539
Unique NamemRNA_8669
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1928
Alignment locationscaffold_27:121119..123046 -

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Properties
Property NameValue
TranscriptId603625
TrackFilteredModels2
ProteinId603539
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_27supercontigscaffold_27:121119..123046 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|603539gene_8669Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|603539mRNA_8669-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_8669CDS_8669Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_8669 ID=mRNA_8669|Name=jgi.p|Nanoce1779_2|603539|organism=Nannochloropsis oceanica|type=mRNA|length=1928bp
CAGGCACATTTCTGTTTTTTTCCTGGGTCCAGTCGGCCAGCTATCTTCAC
TCAAAATGGTTCGAGAGAAGACAGTACGTCTCAAGAAGACAGCCCATGCT
CCCCGCAGCAGTACTGCTGTCGCTCCCGCTCCCACCAGCAGTGCCAAGCC
AGTGGCCGAGAAGCAGCAGAAACAAAAGGACGCAAAGATCATGATCAACA
GCAAGCGTCAGAAGCAGGAGAAGGCGGAGCCACGCAAGCGACAAAAAAAG
GAGGAGGCTCACGACGAGGAGGATTACGAGGAGGAGGACGAGGAGGAGGA
AGAGAGCATACCCAGGAAGTCATCGCACATGGGCGGCATGCGTGGCCTCA
TGATGCGCGGTGGTGCCGAGGGGAGCAGCAGCAGCGACAGCGGCGGTAGT
GGTGACGATGAGGACGAGATGGACCAGGGCAGCGATGCTCCACAAAAGGG
GAGCAAGAAGCGCCTGCTCTCTACTGCTGCCGCCGATGCCGCGTCCAAGA
AGCAAGCCATCGCTACGGTTAAGTCTGCGACAAGCAAGGGAGGTCCCAAA
AGCGCGGAAAGGACCAGCATCATCGCCACCACCGCCAGCAGCAACAGCAA
CAGCAACAGCACCGCAGCAGCAGCGTCAACAGTGAAATACGACGGCTCTT
ACAAAAACAGGCAACGCGTCCTAGTCTTCTGCTCTCGAGGCGTCACCGCT
CGATATCGCCACCTCCTAGAGGACCTGCGCAAGCTTATCCCTCACCACAA
GAAAGATGTCAAATTGGACTGCAAAGGTGACCTGCAGGTGGTGAACGAAA
TAGCGGAGGTGAAGAGCTGCAACAACTGCCTCTTCCTTGAAGCCCGCAAG
CGGCAGGATCTTTACCTGTGGCTCTCCAAGACCCCCCTCGGCCCGTCCAT
CAAATTCAACGTTCTGAACGTCCACACACTGGACGAGCTTCGCCTGACGG
GAAACGCCATGCTGGGCTCCCGTCCCCTCCTCTCCTTCGACCTTGCCTTC
GATGCCCAGCCCCACACCCGGCTCATCAAAGCCCTCCTCACCGACACCTT
TGGGACGCCCCGTGGTCATCCCAAGAGCAAGCCTTTTGTGGACCGTGTTC
TGTCTTTCGCCTTGGCAGATGGGAAAGTCTGGGTCCGAAATTACCAGATC
GTCGACACTGCCCCTGAAGGGACAAGCGCAGACCCGCTCGCAACCGACAA
GGCGGAAGCCAAAGCAGCAGCGAGGGCAGCGGCGGCGGCCAAGAAGAAGA
AAGAGGGATGGCTAGGGGTCGAAGGAGGGAATGAGGATGAATTGACGTCA
CTGGTTGAAATTGGCCCTCGGTTTGTCCTAAATCCGATAAGGATTTTTTC
GGGGAGTTTTGGCGGACCTACGTTGTACCAGAATCCCTCGTTTATCTCAC
CCAATTTTGTGAGGAGTGAGAGGAAGAGGACGGAGGGGGCACGACTGGCG
CATAAGATGAAGGCAGATAGCGTGAGGAAGGAGAGGAAGGCGAAGGCAGT
TTTGCCAAAGGATGAGTTGCAGGAATTGTTCAGGGTCAAGGTCTAAGGGG
AAGGAGGGAGGTAGGGGTAGAGACGAGAGAAAGATGATGAGCTGAGAAAG
GACAAAGAAATAAAAGTATTTAAAAGAATGAAGGGAAGTGATACTAAGCG
AGAAGGGAGAAGGAAAAGCACAGCAAAGAAGAAGAGTGAGGGGAGGCACT
GCCGAGTGGCACAAGAGGGAGAACAAAAGAGTCAATCAGAGAATGGAGAA
GAAAGAGATTGGGGGAAAAAAGGAAACGAAATTGGAAGACGGCAGAGACG
AAGAGTCATTCAATTCGAATGCTACACAGTGATTTGACCTTTATGGAGGT
AAAATAAAAAATCATGCGCATTGATAAGGCAACGGAGAAAGCAATCAGAA
AGTAAGGAAACAGGAACAGAAGACATCA
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protein sequence of jgi.p|Nanoce1779_2|603539

>mRNA_8669-protein ID=mRNA_8669-protein|Name=jgi.p|Nanoce1779_2|603539|organism=Nannochloropsis oceanica|type=polypeptide|length=497bp
MVREKTVRLKKTAHAPRSSTAVAPAPTSSAKPVAEKQQKQKDAKIMINSK
RQKQEKAEPRKRQKKEEAHDEEDYEEEDEEEEESIPRKSSHMGGMRGLMM
RGGAEGSSSSDSGGSGDDEDEMDQGSDAPQKGSKKRLLSTAAADAASKKQ
AIATVKSATSKGGPKSAERTSIIATTASSNSNSNSTAAAASTVKYDGSYK
NRQRVLVFCSRGVTARYRHLLEDLRKLIPHHKKDVKLDCKGDLQVVNEIA
EVKSCNNCLFLEARKRQDLYLWLSKTPLGPSIKFNVLNVHTLDELRLTGN
AMLGSRPLLSFDLAFDAQPHTRLIKALLTDTFGTPRGHPKSKPFVDRVLS
FALADGKVWVRNYQIVDTAPEGTSADPLATDKAEAKAAARAAAAAKKKKE
GWLGVEGGNEDELTSLVEIGPRFVLNPIRIFSGSFGGPTLYQNPSFISPN
FVRSERKRTEGARLAHKMKADSVRKERKAKAVLPKDELQELFRVKV*
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mRNA from alignment at scaffold_27:121119..123046-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_8669 ID=mRNA_8669|Name=jgi.p|Nanoce1779_2|603539|organism=Nannochloropsis oceanica|type=mRNA|length=1928bp|location=Sequence derived from alignment at scaffold_27:121119..123046- (Nannochloropsis oceanica)
CAGGCACATTTCTGTTTTTTTCCTGGGTCCAGTCGGCCAGCTATCTTCAC
TCAAAATGGTTCGAGAGAAGACAGTACGTCTCAAGAAGACAGCCCATGCT
CCCCGCAGCAGTACTGCTGTCGCTCCCGCTCCCACCAGCAGTGCCAAGCC
AGTGGCCGAGAAGCAGCAGAAACAAAAGGACGCAAAGATCATGATCAACA
GCAAGCGTCAGAAGCAGGAGAAGGCGGAGCCACGCAAGCGACAAAAAAAG
GAGGAGGCTCACGACGAGGAGGATTACGAGGAGGAGGACGAGGAGGAGGA
AGAGAGCATACCCAGGAAGTCATCGCACATGGGCGGCATGCGTGGCCTCA
TGATGCGCGGTGGTGCCGAGGGGAGCAGCAGCAGCGACAGCGGCGGTAGT
GGTGACGATGAGGACGAGATGGACCAGGGCAGCGATGCTCCACAAAAGGG
GAGCAAGAAGCGCCTGCTCTCTACTGCTGCCGCCGATGCCGCGTCCAAGA
AGCAAGCCATCGCTACGGTTAAGTCTGCGACAAGCAAGGGAGGTCCCAAA
AGCGCGGAAAGGACCAGCATCATCGCCACCACCGCCAGCAGCAACAGCAA
CAGCAACAGCACCGCAGCAGCAGCGTCAACAGTGAAATACGACGGCTCTT
ACAAAAACAGGCAACGCGTCCTAGTCTTCTGCTCTCGAGGCGTCACCGCT
CGATATCGCCACCTCCTAGAGGACCTGCGCAAGCTTATCCCTCACCACAA
GAAAGATGTCAAATTGGACTGCAAAGGTGACCTGCAGGTGGTGAACGAAA
TAGCGGAGGTGAAGAGCTGCAACAACTGCCTCTTCCTTGAAGCCCGCAAG
CGGCAGGATCTTTACCTGTGGCTCTCCAAGACCCCCCTCGGCCCGTCCAT
CAAATTCAACGTTCTGAACGTCCACACACTGGACGAGCTTCGCCTGACGG
GAAACGCCATGCTGGGCTCCCGTCCCCTCCTCTCCTTCGACCTTGCCTTC
GATGCCCAGCCCCACACCCGGCTCATCAAAGCCCTCCTCACCGACACCTT
TGGGACGCCCCGTGGTCATCCCAAGAGCAAGCCTTTTGTGGACCGTGTTC
TGTCTTTCGCCTTGGCAGATGGGAAAGTCTGGGTCCGAAATTACCAGATC
GTCGACACTGCCCCTGAAGGGACAAGCGCAGACCCGCTCGCAACCGACAA
GGCGGAAGCCAAAGCAGCAGCGAGGGCAGCGGCGGCGGCCAAGAAGAAGA
AAGAGGGATGGCTAGGGGTCGAAGGAGGGAATGAGGATGAATTGACGTCA
CTGGTTGAAATTGGCCCTCGGTTTGTCCTAAATCCGATAAGGATTTTTTC
GGGGAGTTTTGGCGGACCTACGTTGTACCAGAATCCCTCGTTTATCTCAC
CCAATTTTGTGAGGAGTGAGAGGAAGAGGACGGAGGGGGCACGACTGGCG
CATAAGATGAAGGCAGATAGCGTGAGGAAGGAGAGGAAGGCGAAGGCAGT
TTTGCCAAAGGATGAGTTGCAGGAATTGTTCAGGGTCAAGGTCTAAGGGG
AAGGAGGGAGGTAGGGGTAGAGACGAGAGAAAGATGATGAGCTGAGAAAG
GACAAAGAAATAAAAGTATTTAAAAGAATGAAGGGAAGTGATACTAAGCG
AGAAGGGAGAAGGAAAAGCACAGCAAAGAAGAAGAGTGAGGGGAGGCACT
GCCGAGTGGCACAAGAGGGAGAACAAAAGAGTCAATCAGAGAATGGAGAA
GAAAGAGATTGGGGGAAAAAAGGAAACGAAATTGGAAGACGGCAGAGACG
AAGAGTCATTCAATTCGAATGCTACACAGTGATTTGACCTTTATGGAGGT
AAAATAAAAAATCATGCGCATTGATAAGGCAACGGAGAAAGCAATCAGAA
AGTAAGGAAACAGGAACAGAAGACATCA
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Coding sequence (CDS) from alignment at scaffold_27:121119..123046-

>mRNA_8669 ID=mRNA_8669|Name=jgi.p|Nanoce1779_2|603539|organism=Nannochloropsis oceanica|type=CDS|length=1491bp|location=Sequence derived from alignment at scaffold_27:121119..123046- (Nannochloropsis oceanica)
ATGGTTCGAGAGAAGACAGTACGTCTCAAGAAGACAGCCCATGCTCCCCG
CAGCAGTACTGCTGTCGCTCCCGCTCCCACCAGCAGTGCCAAGCCAGTGG
CCGAGAAGCAGCAGAAACAAAAGGACGCAAAGATCATGATCAACAGCAAG
CGTCAGAAGCAGGAGAAGGCGGAGCCACGCAAGCGACAAAAAAAGGAGGA
GGCTCACGACGAGGAGGATTACGAGGAGGAGGACGAGGAGGAGGAAGAGA
GCATACCCAGGAAGTCATCGCACATGGGCGGCATGCGTGGCCTCATGATG
CGCGGTGGTGCCGAGGGGAGCAGCAGCAGCGACAGCGGCGGTAGTGGTGA
CGATGAGGACGAGATGGACCAGGGCAGCGATGCTCCACAAAAGGGGAGCA
AGAAGCGCCTGCTCTCTACTGCTGCCGCCGATGCCGCGTCCAAGAAGCAA
GCCATCGCTACGGTTAAGTCTGCGACAAGCAAGGGAGGTCCCAAAAGCGC
GGAAAGGACCAGCATCATCGCCACCACCGCCAGCAGCAACAGCAACAGCA
ACAGCACCGCAGCAGCAGCGTCAACAGTGAAATACGACGGCTCTTACAAA
AACAGGCAACGCGTCCTAGTCTTCTGCTCTCGAGGCGTCACCGCTCGATA
TCGCCACCTCCTAGAGGACCTGCGCAAGCTTATCCCTCACCACAAGAAAG
ATGTCAAATTGGACTGCAAAGGTGACCTGCAGGTGGTGAACGAAATAGCG
GAGGTGAAGAGCTGCAACAACTGCCTCTTCCTTGAAGCCCGCAAGCGGCA
GGATCTTTACCTGTGGCTCTCCAAGACCCCCCTCGGCCCGTCCATCAAAT
TCAACGTTCTGAACGTCCACACACTGGACGAGCTTCGCCTGACGGGAAAC
GCCATGCTGGGCTCCCGTCCCCTCCTCTCCTTCGACCTTGCCTTCGATGC
CCAGCCCCACACCCGGCTCATCAAAGCCCTCCTCACCGACACCTTTGGGA
CGCCCCGTGGTCATCCCAAGAGCAAGCCTTTTGTGGACCGTGTTCTGTCT
TTCGCCTTGGCAGATGGGAAAGTCTGGGTCCGAAATTACCAGATCGTCGA
CACTGCCCCTGAAGGGACAAGCGCAGACCCGCTCGCAACCGACAAGGCGG
AAGCCAAAGCAGCAGCGAGGGCAGCGGCGGCGGCCAAGAAGAAGAAAGAG
GGATGGCTAGGGGTCGAAGGAGGGAATGAGGATGAATTGACGTCACTGGT
TGAAATTGGCCCTCGGTTTGTCCTAAATCCGATAAGGATTTTTTCGGGGA
GTTTTGGCGGACCTACGTTGTACCAGAATCCCTCGTTTATCTCACCCAAT
TTTGTGAGGAGTGAGAGGAAGAGGACGGAGGGGGCACGACTGGCGCATAA
GATGAAGGCAGATAGCGTGAGGAAGGAGAGGAAGGCGAAGGCAGTTTTGC
CAAAGGATGAGTTGCAGGAATTGTTCAGGGTCAAGGTCTAA
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Synonyms
Publications