jgi.p|Nanoce1779_2|603538, mRNA_8668 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|603538
Unique NamemRNA_8668
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1932
Alignment locationscaffold_27:118569..120676 -

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Properties
Property NameValue
TranscriptId603624
TrackFilteredModels2
ProteinId603538
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_27supercontigscaffold_27:118569..120676 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|603538gene_8668Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|603538mRNA_8668-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_8668CDS_8668Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_8668 ID=mRNA_8668|Name=jgi.p|Nanoce1779_2|603538|organism=Nannochloropsis oceanica|type=mRNA|length=1932bp
CAGGTTAAAAGTCTGACGACGCACCTCTTGCTTCCGCCGCTCTGCAAGAA
GCAGCAGCAACAAGTGCCTAGGAGCAACGCACCCCAGCACACCAGCAAGC
GTCCCTGCTTCTTTCCTACACACAGCAACGATGGCCGGCCGGGAGTTCCT
TGCCGCAGACGCCCCCCGGTGGCGGCCTGAGTTGGCGGTGCGCCAGAACC
CCTATCGTTATCTTGAACACCAAAAAGGCACCATTGGCGTCCTCAAAATC
CGCCTTATCGATGGCCGGGATCTCGATCGCGCCCTACTAGACAACAGCAC
AGCGAGTGGCGGCGGAGGAGGAGGACGAGGTGCCAGTATCTCACCGCAAG
TCGTTATACGAGTGGCGGACGAAGAAGCCAAGTCGACAGTAGCCCCACGG
AACGCTCACCCGTCGTGGCGGGAGAGGTTCACTATGAGTCTAAAGAAAGG
CGTGTTGCAAGAAGGAGCGCCGGTCTTGGTTATATTTCAAGTGATTGACG
CGAGCTCGTGGCGGAGCAAGGGCAAGGATTTGGGGACGGGTAGTCTGGAT
ATTTTGCCGTTATTGAATGGGTCGAGGGGGAGTCATGTGATGGACGAGTG
GATTGATCTGAGTCCAGGCGGGGGGGCATTGCATGTTGTGGTCGAATACG
AACCAATTGGGATGGAGCCGGAGGTGGATGATGTGGTATGTTTTGAGGCA
TTTGCACGGAGTCCGCGGTCGTTGGTCTTTCCCCCGAATGAGCCAATGGT
GGTGCGGGCCGTCTCAGGGGCTTATTTGTTGCTGGGTTTTCGGACGCCTG
GCACCCGCCAAGCCCACTCCCCTGAGGGAGCGCCGGAGTGTCGAGTCAAG
GTACACCGACAAACAGTCTTCGTCATCGAGCGGCACACGTTCATGGACGC
GGCCTGGCATTCCCTTATGGACGTTGGCGAGCTTTTTCAAACCATCCCTC
CCGTGCACTGGGCAAAGAAACAGCTCCAGCCGTACGCCAAGTACGTGCAG
GTACTCGCCCAGCCGGCCTTGACCTCGTTATCGCTAGCCTACGCTGCGGC
GAGACTGGCGATGAGAAGCGGTATGGCGGCAGTTGGTGGTGCGACCAGTA
CGGTATTTGGGGACGATTAAAGGGGAAGGTTTTTGTCGTTGAGTGAGCTG
GGCCCTTGTCTTGTTTGGGAAGCGAGGGAGGGAGCGCGGGGATATTGTAC
AGAAATTAGCAGCGGGAGATGACTCATTGGGGGGGAGTATATCTCGCTCA
CAGGAAACGTTATCGGGGATCCGAATAGGGAAAGAACGAAGAACAACAAG
AAGATGAAAAGAAGGACAGCAATGAGACTTACAGGTCTCAGTAATCAAAA
CTAACAAATACCAAACTAGGGTATGACAAGCAAACTTTCTTAATTGGATA
ACGGCATACGAGTCGCGTGACCGGTACCCGACATGCTCAGGCAGTGACTC
CCCTTCAATTGCCAACTCAGCCGCATAGGGGGGGGGAAGCAAGCAACATC
ATTCGAGCGAGAGAGAAAGAGAAAGTGTGTGAGAGTGAGTCCCAATACAA
AGAGGTCTCTCGTGCGTGTGCCCATGCTCAAATTTCTAACTTTTTTTTAA
CATTAATCTACCCTCATTTCCTCCCTCTCACTTTTCCTTCCTTCCTGACC
CCACTCACACACACCCCTCCACACCTATCTAGCCCATTTCCTATCTTGTC
CTCTTCCTCACGCTCTCTCACGACGACGATGATCCTTTCCCCGCCGGCGG
TGACGGTGGGGACTGACTGAAAAGATCATGCTCATCCGCCTCCACATCGA
CGCCTCCCGACAGAGCCCTCTCCTGCTCGTGCTCCTCCTCCTCATGAAGA
AGCGTCAAACTCCCTTTCAGCGCCGGCTTCTCCTCTTTCTTCCCCACCAC
CTCCTCCTTACCTCCCTCCTTCCCTCCTTCCT
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protein sequence of jgi.p|Nanoce1779_2|603538

>mRNA_8668-protein ID=mRNA_8668-protein|Name=jgi.p|Nanoce1779_2|603538|organism=Nannochloropsis oceanica|type=polypeptide|length=330bp
MAGREFLAADAPRWRPELAVRQNPYRYLEHQKGTIGVLKIRLIDGRDLDR
ALLDNSTASGGGGGGRGASISPQVVIRVADEEAKSTVAPRNAHPSWRERF
TMSLKKGVLQEGAPVLVIFQVIDASSWRSKGKDLGTGSLDILPLLNGSRG
SHVMDEWIDLSPGGGALHVVVEYEPIGMEPEVDDVVCFEAFARSPRSLVF
PPNEPMVVRAVSGAYLLLGFRTPGTRQAHSPEGAPECRVKVHRQTVFVIE
RHTFMDAAWHSLMDVGELFQTIPPVHWAKKQLQPYAKYVQVLAQPALTSL
SLAYAAARLAMRSGMAAVGGATSTVFGDD*
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mRNA from alignment at scaffold_27:118569..120676-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_8668 ID=mRNA_8668|Name=jgi.p|Nanoce1779_2|603538|organism=Nannochloropsis oceanica|type=mRNA|length=2108bp|location=Sequence derived from alignment at scaffold_27:118569..120676- (Nannochloropsis oceanica)
CAGGTTAAAAGTCTGACGACGCACCTCTTGCTTCCGCCGCTCTGCAAGAA
GCAGCAGCAACAAGTGCCTAGGAGCAACGCACCCCAGCACACCAGCAAGC
GTCCCTGCTTCTTTCCTACACACAGCAACGATGGCCGGCCGGGAGTTCCT
TGCCGCAGACGCCCCCCGGTGGCGGCCTGAGTTGGCGGTGCGCCAGAACC
CCTATCGTTATCTTGAACACCAAAAAGGCACCATTGGCGTCCTCAAAATC
CGCCTTATCGATGGCCGGGATCTCGATCGCGCCCTACTAGACAACAGCAC
AGCGAGTGGCGGCGGAGGAGGAGGACGAGGTGCCAGTATCTCACCGCAAG
TCGTTATACGAGTGGCGGACGAAGAAGCCAAGTCGACAGTAGCCCCACGG
AACGCTCACCCGTCGTGGCGGGAGAGGTTCACTATGAGTCTAAAGAAAGG
CGTGTTGCAAGAAGGAGCGCCGGTCTTGGTTATATTTCAAGTGATTGACG
CGAGCTCGTGGCGGAGCAAGGGCAAGGATTTGGGGACGGGTAGTCTGGAT
ATTTTGCCGTTATTGAATGGGTCGAGGGGGAGTCATGTGATGGACGAGTG
GATTGATCTGAGTCCAGGCGGGGGGGCATTGCATGTTGTGGTCGAATACG
AACCAATTGGGATGGAGCCGGAGGTGGATGATGTGGTATGTTTTGAGGCA
TTTGCACGGAGTCCGCGGTCGTTGGTCTTTCCCCCGAATGAGCCAATGGT
GGTGCGGGTACGTCTAGGCGTGGAAAGGAGGAAGGGAGGGAGGGAGAGAG
AGAGAGATGTGTTCGTGCATATCCATTGATTGATCCTTTTTAATTTTATT
ATCTATCCCTCTGCGTATATTCATTGATTAATACTTTATTATTCAATGTT
TCATCCTTCTACTTTCCTCTCCGCTTTTCTCAGGCCGTCTCAGGGGCTTA
TTTGTTGCTGGGTTTTCGGACGCCTGGCACCCGCCAAGCCCACTCCCCTG
AGGGAGCGCCGGAGTGTCGAGTCAAGGTACACCGACAAACAGTCTTCGTC
ATCGAGCGGCACACGTTCATGGACGCGGCCTGGCATTCCCTTATGGACGT
TGGCGAGCTTTTTCAAACCATCCCTCCCGTGCACTGGGCAAAGAAACAGC
TCCAGCCGTACGCCAAGTACGTGCAGGTACTCGCCCAGCCGGCCTTGACC
TCGTTATCGCTAGCCTACGCTGCGGCGAGACTGGCGATGAGAAGCGGTAT
GGCGGCAGTTGGTGGTGCGACCAGTACGGTATTTGGGGACGATTAAAGGG
GAAGGTTTTTGTCGTTGAGTGAGCTGGGCCCTTGTCTTGTTTGGGAAGCG
AGGGAGGGAGCGCGGGGATATTGTACAGAAATTAGCAGCGGGAGATGACT
CATTGGGGGGGAGTATATCTCGCTCACAGGAAACGTTATCGGGGATCCGA
ATAGGGAAAGAACGAAGAACAACAAGAAGATGAAAAGAAGGACAGCAATG
AGACTTACAGGTCTCAGTAATCAAAACTAACAAATACCAAACTAGGGTAT
GACAAGCAAACTTTCTTAATTGGATAACGGCATACGAGTCGCGTGACCGG
TACCCGACATGCTCAGGCAGTGACTCCCCTTCAATTGCCAACTCAGCCGC
ATAGGGGGGGGGAAGCAAGCAACATCATTCGAGCGAGAGAGAAAGAGAAA
GTGTGTGAGAGTGAGTCCCAATACAAAGAGGTCTCTCGTGCGTGTGCCCA
TGCTCAAATTTCTAACTTTTTTTTAACATTAATCTACCCTCATTTCCTCC
CTCTCACTTTTCCTTCCTTCCTGACCCCACTCACACACACCCCTCCACAC
CTATCTAGCCCATTTCCTATCTTGTCCTCTTCCTCACGCTCTCTCACGAC
GACGATGATCCTTTCCCCGCCGGCGGTGACGGTGGGGACTGACTGAAAAG
ATCATGCTCATCCGCCTCCACATCGACGCCTCCCGACAGAGCCCTCTCCT
GCTCGTGCTCCTCCTCCTCATGAAGAAGCGTCAAACTCCCTTTCAGCGCC
GGCTTCTCCTCTTTCTTCCCCACCACCTCCTCCTTACCTCCCTCCTTCCC
TCCTTCCT
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Coding sequence (CDS) from alignment at scaffold_27:118569..120676-

>mRNA_8668 ID=mRNA_8668|Name=jgi.p|Nanoce1779_2|603538|organism=Nannochloropsis oceanica|type=CDS|length=1980bp|location=Sequence derived from alignment at scaffold_27:118569..120676- (Nannochloropsis oceanica)
GGCCGTCTCAGGGGCTTATTTGTTGCTGGGTTTTCGGACGCCTGGCACCC
GCCAAGCCCACTCCCCTGAGGGAGCGCCGGAGTGTCGAGTCAAGGTACAC
CGACAAACAGTCTTCGTCATCGAGCGGCACACGTTCATGGACGCGGCCTG
GCATTCCCTTATGGACGTTGGCGAGCTTTTTCAAACCATCCCTCCCGTGC
ACTGGGCAAAGAAACAGCTCCAGCCGTACGCCAAGTACGTGCAGGTACTC
GCCCAGCCGGCCTTGACCTCGTTATCGCTAGCCTACGCTGCGGCGAGACT
GGCGATGAGAAGCGGTATGGCGGCAGTTGGTGGTGCGACCAGTACGGTAT
TTGGGGACGATTAAATGGCCGGCCGGGAGTTCCTTGCCGCAGACGCCCCC
CGGTGGCGGCCTGAGTTGGCGGTGCGCCAGAACCCCTATCGTTATCTTGA
ACACCAAAAAGGCACCATTGGCGTCCTCAAAATCCGCCTTATCGATGGCC
GGGATCTCGATCGCGCCCTACTAGACAACAGCACAGCGAGTGGCGGCGGA
GGAGGAGGACGAGGTGCCAGTATCTCACCGCAAGTCGTTATACGAGTGGC
GGACGAAGAAGCCAAGTCGACAGTAGCCCCACGGAACGCTCACCCGTCGT
GGCGGGAGAGGTTCACTATGAGTCTAAAGAAAGGCGTGTTGCAAGAAGGA
GCGCCGGTCTTGGTTATATTTCAAGTGATTGACGCGAGCTCGTGGCGGAG
CAAGGGCAAGGATTTGGGGACGGGTAGTCTGGATATTTTGCCGTTATTGA
ATGGGTCGAGGGGGAGTCATGTGATGGACGAGTGGATTGATCTGAGTCCA
GGCGGGGGGGCATTGCATGTTGTGGTCGAATACGAACCAATTGGGATGGA
GCCGGAGGTGGATGATGTGGTATGTTTTGAGGCATTTGCACGGAGTCCGC
GGTCGTTGGTCTTTCCCCCGAATGAGCCAATGGTGGTGCGGGCCGTCTCA
GGGGCTTATTTGTTGCTGGGTTTTCGGACGCCTGGCACCCGCCAAGCCCA
CTCCCCTGAGGGAGCGCCGGAGTGTCGAGTCAAGGTACACCGACAAACAG
TCTTCGTCATCGAGCGGCACACGTTCATGGACGCGGCCTGGCATTCCCTT
ATGGACGTTGGCGAGCTTTTTCAAACCATCCCTCCCGTGCACTGGGCAAA
GAAACAGCTCCAGCCGTACGCCAAGTACGTGCAGGTACTCGCCCAGCCGG
CCTTGACCTCGTTATCGCTAGCCTACGCTGCGGCGAGACTGGCGATGAGA
AGCGGTATGGCGGCAGTTGGTGGTGCGACCAGTACGGTATTTGGGGACGA
TTAAATGGCCGGCCGGGAGTTCCTTGCCGCAGACGCCCCCCGGTGGCGGC
CTGAGTTGGCGGTGCGCCAGAACCCCTATCGTTATCTTGAACACCAAAAA
GGCACCATTGGCGTCCTCAAAATCCGCCTTATCGATGGCCGGGATCTCGA
TCGCGCCCTACTAGACAACAGCACAGCGAGTGGCGGCGGAGGAGGAGGAC
GAGGTGCCAGTATCTCACCGCAAGTCGTTATACGAGTGGCGGACGAAGAA
GCCAAGTCGACAGTAGCCCCACGGAACGCTCACCCGTCGTGGCGGGAGAG
GTTCACTATGAGTCTAAAGAAAGGCGTGTTGCAAGAAGGAGCGCCGGTCT
TGGTTATATTTCAAGTGATTGACGCGAGCTCGTGGCGGAGCAAGGGCAAG
GATTTGGGGACGGGTAGTCTGGATATTTTGCCGTTATTGAATGGGTCGAG
GGGGAGTCATGTGATGGACGAGTGGATTGATCTGAGTCCAGGCGGGGGGG
CATTGCATGTTGTGGTCGAATACGAACCAATTGGGATGGAGCCGGAGGTG
GATGATGTGGTATGTTTTGAGGCATTTGCACGGAGTCCGCGGTCGTTGGT
CTTTCCCCCGAATGAGCCAATGGTGGTGCG
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Synonyms
Publications