jgi.p|Nanoce1779_2|603528, mRNA_8666 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|603528
Unique Name	mRNA_8666
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1934
Alignment location	scaffold_27:112105..114268 -

Link to JBrowse

Properties


Property Name	Value
TranscriptId	603614
Track	FilteredModels2
ProteinId	603528

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_27	supercontig	scaffold_27:112105..114268 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|603528	gene_8666	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|603528	mRNA_8666-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_8666	CDS_8666	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_27:112105..114268-
coding sequence from alignment at scaffold_27:112105..114268-

mRNA sequence

>mRNA_8666 ID=mRNA_8666|Name=jgi.p|Nanoce1779_2|603528|organism=Nannochloropsis oceanica|type=mRNA|length=1934bp
AATAGAAACGCACAGGACATACGCAAGGCTCGGGCACAGGGGAAGGGAAG
CAAAGCGTGGACTTGGACACCACTGACGCCGCCGACGAACTCAAAACCTC
CTCTCTCCTACATCCCTCGGCCTTCGCCATGCTGGTCGAATACATAGCCG
GTTTCCTAACTCCCTCCTATTTATTCTCATGGGACGGCTTGCTCCTTCTT
GGCGTGATTTTCTACCTGGTGTTTGTAGGAAGGAAAGGCGCCGCCGTCGC
CGCAGCCACGAAGAAGCACGTTTCTGCCTCCCTCCTCCAGCAATGCCTCG
CCCCAGTCTTTGCGACCCAGCAAGCCAAAGACCACATCGCTGCATCCGTC
GGTCGCAGTAGACGAAAGCCAATTCAATCACAGTCGTCTCCTTTATCTCC
ATCCACCTCCATCACCTCCTGCTCCTCCTCCTCCTCCTCCTCCTCCTTGT
CTGTCAACGGCAATAGGGACTCCGACCCTTTTTGGTCCAATCGTGCCTTA
CCAACCCCACCATCACCGACAGCAGCAGTGGCAGCACCGCCACGATCACC
AGCAGCAGTAACAACAATAATAAACCCACTAGTATCACGAGCATCAGAAT
CACTAGCATCGATATCACGAGCCTCTAAAACCACGTTTAGTATCATCCCC
GAAACCACCACAACCGATCCTGCTGCTGCAGCCGATACCCTTTCCTCTCC
TCCCCCCACCTCATCTTCCCCCCATCCTCCCCCCCTCCAACACCTCGCCA
TTATCATGGATGGCAACCGCCGCTACGGTCGTGAACGTTTTTCCGACCCG
GTAAAGGGGCACGGGGAGGGAGGACGGGCCCTCTCCAATGTGTCACAATG
GTGCTTGGAAAAAGGCATAAAGCACCTGACCGTCTACGCCTTCTCCACCG
AGAACTGGAGAAGGGACCCCTCTGAAATATCGGCCTTGATGCACTTGTTT
ACTGACTACGCCCACCGCATGAAAAAGGAGGCGTTAAATTCAAATATTCA
AATCCGTGTCCTCTCAACGGATACCTCGCGTTTGCCGCCCCATGTCCAAG
CAGCCATGACGGACCTTGAATCATCCACCACCTCCTGCACATCCCTCATT
CTCAACCTTTGTGTCTCGTATGGCTCCCGTGGAGAGATCGCACATGCCTG
TCAACAGCTGGCGCGTGATGTAGCTGCTGGCACCCTCCATCCCGACCAAA
TAGACGAAGCCGCCATCAGCCGCTCCCTACTCACCTCCCACTCCCCCGAC
CCCGACCTACTGCTTCGCACCAGCGGGGAGTGCCGCCTCTCCAATTTCCT
TCTCTTTCAACTCGCCTATGCCGAGATGGTTTTCCTGGACAAATACTGGC
CAGAGGTGACGGCGAGGGATTTAGACGGCATCCTTCACGAGTATATAAAA
AGAGAGAGGAGGTTTGGGTGTTAATAGAGGCAAAGCCACCTTACCTCCCT
CCCCCCCCCCCTAAATTCTTTCCTATCTCTCTACTTGTGTCGAGATGTTA
CTCACCGGAAGACGACTGGTCGAATGTGGTGGGGAAAAAAAAGGACTAGG
GAGATATGCTGTCAAGGTACACTGAGGGAGGTTGAAGCTTTGGCTGTTAT
GTAGGCAGGATGGGACAGAGGAAGGGCGGGAAGAAAGGTAGGAAAGTCGC
GTTCAAGATGTGTGCATTCTCATGTAGACCTAAATAATTGGAAGGGAGGC
AAAGGGTGGAATGTTACGTCTTTCCCTTGCGGGCATGTTCATGGAAAAGC
GAAAGAGGTTGACAAGTCTGAGAGAGAGAAAGAGATATGTAGTGGTAGGA
GGTAGGAATGATGATGCCCGTGGCACCCATTTGAGGATGCCTGCATGCAC
GAGTGGATACAGCGCACTAGAAACATCATGAAGAGGAAGGAGCGATGGGA
AGAAAAGAGAAGGCGGGCGCAGGGGGTAGAGGGC

protein sequence of jgi.p|Nanoce1779_2|603528

>mRNA_8666-protein ID=mRNA_8666-protein|Name=jgi.p|Nanoce1779_2|603528|organism=Nannochloropsis oceanica|type=polypeptide|length=432bp
MLVEYIAGFLTPSYLFSWDGLLLLGVIFYLVFVGRKGAAVAAATKKHVSA
SLLQQCLAPVFATQQAKDHIAASVGRSRRKPIQSQSSPLSPSTSITSCSS
SSSSSSLSVNGNRDSDPFWSNRALPTPPSPTAAVAAPPRSPAAVTTIINP
LVSRASESLASISRASKTTFSIIPETTTTDPAAAADTLSSPPPTSSSPHP
PPLQHLAIIMDGNRRYGRERFSDPVKGHGEGGRALSNVSQWCLEKGIKHL
TVYAFSTENWRRDPSEISALMHLFTDYAHRMKKEALNSNIQIRVLSTDTS
RLPPHVQAAMTDLESSTTSCTSLILNLCVSYGSRGEIAHACQQLARDVAA
GTLHPDQIDEAAISRSLLTSHSPDPDLLLRTSGECRLSNFLLFQLAYAEM
VFLDKYWPEVTARDLDGILHEYIKRERRFGC*

mRNA from alignment at scaffold_27:112105..114268-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_8666 ID=mRNA_8666|Name=jgi.p|Nanoce1779_2|603528|organism=Nannochloropsis oceanica|type=mRNA|length=2164bp|location=Sequence derived from alignment at scaffold_27:112105..114268- (Nannochloropsis oceanica)
AATAGAAACGCACAGGACATACGCAAGGCTCGGGCACAGGGGAAGGGAAG
CAAAGCGTGGACTTGGACACCACTGACGCCGCCGACGAACTCAAAACCTC
CTCTCTCCTACATCCCTCGGCCTTCGCCATGCTGGTCGAATACATAGCCG
GTTTCCTAACTCCCTCCTATTTATTCTCATGGGACGGCTTGCTCCTTCTT
GGCGTGATTTTCTACCTGGTGTTTGTAGGAAGGAAAGGCGCCGCCGTCGC
CGCAGCCACGAAGAAGCACGTTTCTGCCTCCCTCCTCCAGCAATGCCTCG
CCCCAGTCTTTGCGACCCAGCAAGCCAAAGACCACATCGCTGCATCCGTC
GGTCGCAGTAGACGAAAGCCAATTCAATCACAGTCGTCTCCTTTATCTCC
ATCCACCTCCATCACCTCCTGCTCCTCCTCCTCCTCCTCCTCCTCCTTGT
CTGTCAACGGCAATAGGGACTCCGACCCTTTTTGGTCCAATCGTGCCTTA
CCAACCCCACCATCACCGACAGCAGCAGTGGCAGCACCGCCACGATCACC
AGCAGCAGTAACAACAATAATAAACCCACTAGTATCACGAGCATCAGAAT
CACTAGCATCGATATCACGAGCCTCTAAAACCACGTTTAGTATCATCCCC
GAAACCACCACAACCGATCCTGCTGCTGCAGCCGATACCCTTTCCTCTCC
TCCCCCCACCTCATCTTCCCCCCATCCTCCCCCCCTCCAACACCTCGCCA
TTATCATGGATGGCAACCGCCGCTACGGTCGTGAACGTTTTTCCGACCCG
GTAAAGGGGCACGGGGAGGGAGGACGGGCCCTCTCCAATGTGTCACAATG
GTGCTTGGAAAAAGGCATAAAGCACCTGACCGTCTACGCCTTCTCCACCG
AGAACTGGAGAAGGGACCCCTCTGAAATATCGGCCTTGATGCACTTGTTT
ACTGACTACGCCCACCGCATGAAAAAGGAGGCGTTAAATTCAAATATTCA
AATCCGTGTCCTCTCAACGGATACCTCGCGTTTGCCGCCCCATGTCCAAG
CAGCCATGACGGACCTTGAATCATCCACCACCTCCTGCACATCCCTCATT
CTCAACCTTTGTGTCTCGTATGGCTCCCGTGGAGAGATCGCACATGCCTG
TCAACAGCTGGCGCGTGATGTAGCTGCTGGCACCCTCCATCCCGACCAAA
TAGACGAAGCCGCCATCAGCCGCTCCCTACTCACCTCCCACTCCCCCGGT
ACGTACTCACGCACGCCCTCCCTCCCTCCCTCCCTTCCTCTCCTCCCCTC
ACTCTCCTTCCTCTGTGTCCGTCACAGACACTCGCTGGCATTGTCGCGGC
AGGTACCCCCTAGCCCGGCCAAGTAGTCGAGGCCGCCCTCCCTCCCTCCC
TCCCTCCCTCCCTCACTCACTCACTCACTCACTCACTCACTCACTTACCT
ACTCCTCCATCCCTACCTCCCTCTCTAGACCCCGACCTACTGCTTCGCAC
CAGCGGGGAGTGCCGCCTCTCCAATTTCCTTCTCTTTCAACTCGCCTATG
CCGAGATGGTTTTCCTGGACAAATACTGGCCAGAGGTGACGGCGAGGGAT
TTAGACGGCATCCTTCACGAGTATATAAAAAGAGAGAGGAGGTTTGGGTG
TTAATAGAGGCAAAGCCACCTTACCTCCCTCCCCCCCCCCCTAAATTCTT
TCCTATCTCTCTACTTGTGTCGAGATGTTACTCACCGGAAGACGACTGGT
CGAATGTGGTGGGGAAAAAAAAGGACTAGGGAGATATGCTGTCAAGGTAC
ACTGAGGGAGGTTGAAGCTTTGGCTGTTATGTAGGCAGGATGGGACAGAG
GAAGGGCGGGAAGAAAGGTAGGAAAGTCGCGTTCAAGATGTGTGCATTCT
CATGTAGACCTAAATAATTGGAAGGGAGGCAAAGGGTGGAATGTTACGTC
TTTCCCTTGCGGGCATGTTCATGGAAAAGCGAAAGAGGTTGACAAGTCTG
AGAGAGAGAAAGAGATATGTAGTGGTAGGAGGTAGGAATGATGATGCCCG
TGGCACCCATTTGAGGATGCCTGCATGCACGAGTGGATACAGCGCACTAG
AAACATCATGAAGAGGAAGGAGCGATGGGAAGAAAAGAGAAGGCGGGCGC
AGGGGGTAGAGGGC

Coding sequence (CDS) from alignment at scaffold_27:112105..114268-

>mRNA_8666 ID=mRNA_8666|Name=jgi.p|Nanoce1779_2|603528|organism=Nannochloropsis oceanica|type=CDS|length=2592bp|location=Sequence derived from alignment at scaffold_27:112105..114268- (Nannochloropsis oceanica)
ACCCCGACCTACTGCTTCGCACCAGCGGGGAGTGCCGCCTCTCCAATTTC
CTTCTCTTTCAACTCGCCTATGCCGAGATGGTTTTCCTGGACAAATACTG
GCCAGAGGTGACGGCGAGGGATTTAGACGGCATCCTTCACGAGTATATAA
AAAGAGAGAGGAGGTTTGGGTGTTAAATGCTGGTCGAATACATAGCCGGT
TTCCTAACTCCCTCCTATTTATTCTCATGGGACGGCTTGCTCCTTCTTGG
CGTGATTTTCTACCTGGTGTTTGTAGGAAGGAAAGGCGCCGCCGTCGCCG
CAGCCACGAAGAAGCACGTTTCTGCCTCCCTCCTCCAGCAATGCCTCGCC
CCAGTCTTTGCGACCCAGCAAGCCAAAGACCACATCGCTGCATCCGTCGG
TCGCAGTAGACGAAAGCCAATTCAATCACAGTCGTCTCCTTTATCTCCAT
CCACCTCCATCACCTCCTGCTCCTCCTCCTCCTCCTCCTCCTCCTTGTCT
GTCAACGGCAATAGGGACTCCGACCCTTTTTGGTCCAATCGTGCCTTACC
AACCCCACCATCACCGACAGCAGCAGTGGCAGCACCGCCACGATCACCAG
CAGCAGTAACAACAATAATAAACCCACTAGTATCACGAGCATCAGAATCA
CTAGCATCGATATCACGAGCCTCTAAAACCACGTTTAGTATCATCCCCGA
AACCACCACAACCGATCCTGCTGCTGCAGCCGATACCCTTTCCTCTCCTC
CCCCCACCTCATCTTCCCCCCATCCTCCCCCCCTCCAACACCTCGCCATT
ATCATGGATGGCAACCGCCGCTACGGTCGTGAACGTTTTTCCGACCCGGT
AAAGGGGCACGGGGAGGGAGGACGGGCCCTCTCCAATGTGTCACAATGGT
GCTTGGAAAAAGGCATAAAGCACCTGACCGTCTACGCCTTCTCCACCGAG
AACTGGAGAAGGGACCCCTCTGAAATATCGGCCTTGATGCACTTGTTTAC
TGACTACGCCCACCGCATGAAAAAGGAGGCGTTAAATTCAAATATTCAAA
TCCGTGTCCTCTCAACGGATACCTCGCGTTTGCCGCCCCATGTCCAAGCA
GCCATGACGGACCTTGAATCATCCACCACCTCCTGCACATCCCTCATTCT
CAACCTTTGTGTCTCGTATGGCTCCCGTGGAGAGATCGCACATGCCTGTC
AACAGCTGGCGCGTGATGTAGCTGCTGGCACCCTCCATCCCGACCAAATA
GACGAAGCCGCCATCAGCCGCTCCCTACTCACCTCCCACTCCCCCGACCC
CGACCTACTGCTTCGCACCAGCGGGGAGTGCCGCCTCTCCAATTTCCTTC
TCTTTCAACTCGCCTATGCCGAGATGGTTTTCCTGGACAAATACTGGCCA
GAGGTGACGGCGAGGGATTTAGACGGCATCCTTCACGAGTATATAAAAAG
AGAGAGGAGGTTTGGGTGTTAAATGCTGGTCGAATACATAGCCGGTTTCC
TAACTCCCTCCTATTTATTCTCATGGGACGGCTTGCTCCTTCTTGGCGTG
ATTTTCTACCTGGTGTTTGTAGGAAGGAAAGGCGCCGCCGTCGCCGCAGC
CACGAAGAAGCACGTTTCTGCCTCCCTCCTCCAGCAATGCCTCGCCCCAG
TCTTTGCGACCCAGCAAGCCAAAGACCACATCGCTGCATCCGTCGGTCGC
AGTAGACGAAAGCCAATTCAATCACAGTCGTCTCCTTTATCTCCATCCAC
CTCCATCACCTCCTGCTCCTCCTCCTCCTCCTCCTCCTCCTTGTCTGTCA
ACGGCAATAGGGACTCCGACCCTTTTTGGTCCAATCGTGCCTTACCAACC
CCACCATCACCGACAGCAGCAGTGGCAGCACCGCCACGATCACCAGCAGC
AGTAACAACAATAATAAACCCACTAGTATCACGAGCATCAGAATCACTAG
CATCGATATCACGAGCCTCTAAAACCACGTTTAGTATCATCCCCGAAACC
ACCACAACCGATCCTGCTGCTGCAGCCGATACCCTTTCCTCTCCTCCCCC
CACCTCATCTTCCCCCCATCCTCCCCCCCTCCAACACCTCGCCATTATCA
TGGATGGCAACCGCCGCTACGGTCGTGAACGTTTTTCCGACCCGGTAAAG
GGGCACGGGGAGGGAGGACGGGCCCTCTCCAATGTGTCACAATGGTGCTT
GGAAAAAGGCATAAAGCACCTGACCGTCTACGCCTTCTCCACCGAGAACT
GGAGAAGGGACCCCTCTGAAATATCGGCCTTGATGCACTTGTTTACTGAC
TACGCCCACCGCATGAAAAAGGAGGCGTTAAATTCAAATATTCAAATCCG
TGTCCTCTCAACGGATACCTCGCGTTTGCCGCCCCATGTCCAAGCAGCCA
TGACGGACCTTGAATCATCCACCACCTCCTGCACATCCCTCATTCTCAAC
CTTTGTGTCTCGTATGGCTCCCGTGGAGAGATCGCACATGCCTGTCAACA
GCTGGCGCGTGATGTAGCTGCTGGCACCCTCCATCCCGACCAAATAGACG
AAGCCGCCATCAGCCGCTCCCTACTCACCTCCCACTCCCCCG

Synonyms

Publications