jgi.p|Nanoce1779_2|603521, mRNA_8665 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|603521
Unique NamemRNA_8665
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length538
Alignment locationscaffold_27:108635..109172 -

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Properties
Property NameValue
TranscriptId603607
TrackFilteredModels2
ProteinId603521
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_27supercontigscaffold_27:108635..109172 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|603521gene_8665Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|603521mRNA_8665-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_8665CDS_8665Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_8665 ID=mRNA_8665|Name=jgi.p|Nanoce1779_2|603521|organism=Nannochloropsis oceanica|type=mRNA|length=538bp
CTGCGGGCGGAAGTAGCAGGTATTCTCCCAGCAGAGCAGGCGGGCCTTCC
TCATGTCGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGGATAGTAGT
GAAAGCGTTATGTCTCTCTTCCTCCTCTTCATCTTCTTCCTCCTTCTCCT
TCTCCTCTCGCCCCTCTTCAGTTGTCGCTGCCGTCGGCAAAGGCGCCGTC
CCCGCGATAACTACTTGGTACGCTTCTCCTTCTCCTTCTACCCCTTCCCC
AAGACGCCGCCACCATCCCACCAGCCCATGGCGTCTTCCGCTCTCTGGTG
CTGATCCTGCCTCTGCTTCTATTCCTAATCCTACTATAGCTGATGTTGCA
ATCCTTGCCTTGGTGCTGTCCACGCCCTCGGGCCAGTAGAGCTGTAGAGA
TATCATCTCCTGTGCTAAGGGTAGATATGGCCCGCAGCCGCAGCAGCCCG
TCTCCGCTTGTTTCTCCGCCGCAACTCCTTCTGAAGCTAAGGACTATCGC
ATCTCGAACTGTCCATCCCTTTTGCTTGTGTCTGTCGT
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protein sequence of jgi.p|Nanoce1779_2|603521

>mRNA_8665-protein ID=mRNA_8665-protein|Name=jgi.p|Nanoce1779_2|603521|organism=Nannochloropsis oceanica|type=polypeptide|length=84bp
MSLLLLLLLLLLLDSSESVMSLFLLFIFFLLLLLLSPLFSCRCRRQRRRP
RDNYLVRFSFSFYPFPKTPPPSHQPMASSALWC*
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mRNA from alignment at scaffold_27:108635..109172-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_8665 ID=mRNA_8665|Name=jgi.p|Nanoce1779_2|603521|organism=Nannochloropsis oceanica|type=mRNA|length=538bp|location=Sequence derived from alignment at scaffold_27:108635..109172- (Nannochloropsis oceanica)
CTGCGGGCGGAAGTAGCAGGTATTCTCCCAGCAGAGCAGGCGGGCCTTCC
TCATGTCGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGGATAGTAGT
GAAAGCGTTATGTCTCTCTTCCTCCTCTTCATCTTCTTCCTCCTTCTCCT
TCTCCTCTCGCCCCTCTTCAGTTGTCGCTGCCGTCGGCAAAGGCGCCGTC
CCCGCGATAACTACTTGGTACGCTTCTCCTTCTCCTTCTACCCCTTCCCC
AAGACGCCGCCACCATCCCACCAGCCCATGGCGTCTTCCGCTCTCTGGTG
CTGATCCTGCCTCTGCTTCTATTCCTAATCCTACTATAGCTGATGTTGCA
ATCCTTGCCTTGGTGCTGTCCACGCCCTCGGGCCAGTAGAGCTGTAGAGA
TATCATCTCCTGTGCTAAGGGTAGATATGGCCCGCAGCCGCAGCAGCCCG
TCTCCGCTTGTTTCTCCGCCGCAACTCCTTCTGAAGCTAAGGACTATCGC
ATCTCGAACTGTCCATCCCTTTTGCTTGTGTCTGTCGT
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Coding sequence (CDS) from alignment at scaffold_27:108635..109172-

>mRNA_8665 ID=mRNA_8665|Name=jgi.p|Nanoce1779_2|603521|organism=Nannochloropsis oceanica|type=CDS|length=252bp|location=Sequence derived from alignment at scaffold_27:108635..109172- (Nannochloropsis oceanica)
ATGTCGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGGATAGTAGTGA
AAGCGTTATGTCTCTCTTCCTCCTCTTCATCTTCTTCCTCCTTCTCCTTC
TCCTCTCGCCCCTCTTCAGTTGTCGCTGCCGTCGGCAAAGGCGCCGTCCC
CGCGATAACTACTTGGTACGCTTCTCCTTCTCCTTCTACCCCTTCCCCAA
GACGCCGCCACCATCCCACCAGCCCATGGCGTCTTCCGCTCTCTGGTGCT
GA
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Synonyms
Publications