jgi.p|Nanoce1779_2|603517, mRNA_8663 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|603517
Unique NamemRNA_8663
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length2053
Alignment locationscaffold_27:102390..104442 -

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Properties
Property NameValue
TranscriptId603603
TrackFilteredModels2
ProteinId603517
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_27supercontigscaffold_27:102390..104442 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|603517gene_8663Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|603517mRNA_8663-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_8663CDS_8663Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_8663 ID=mRNA_8663|Name=jgi.p|Nanoce1779_2|603517|organism=Nannochloropsis oceanica|type=mRNA|length=2053bp
AGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAAGACACCCAG
AAGCGAAGCGAAACAACTAATGCGTCTCTCTTCTACACACATATACACAA
CACACACCCCCACGCAGGTTTTCATTCCAATAGGTTGTTGTCATCAGCGC
TAGCCGTGAGCCTTCTCCCCTCATTCCTCCTTTAGCTTCTCTTCAAAATA
GAGGACACCAGTCAGAAGAGGAGGTGAAATCTGTAGGGTTAGGGTGAGCC
ACGCGAGGCAGGGATGGTGGCTAAGGAGCAACAAAGGCTTAGATATTCAG
TAGCAGTAGTGGCACCAGCAGTTGTAAAACAACGGAAAGGAAGGGAAGAA
GACAAACATAGCAGTAGCAGCAGCATCAGCAGCAATTGCGACGGTGAGGA
ATAGGACGAGCAGGACCAGGACTGAAGGGAATGATGCCGTCCATCTTCAC
CCGAAAGAAGGCCACAGCTCCGCCACCCACCCCACCCCCGACAGCAGTAC
CAGCACCAGCACCCGTGCAAGCACCACCAACAGTACCAACAGCACTTAAA
GCACCCACAGTACCAATAACACCAGCAGCACTAGCACCTGCAGTGGTAGT
AGTCATGGATCCCGATGACTTCCCCCCTCCCAGAATCACTCAAGGAAGTA
TCCGTGACCTCCAAGTCCTCGAATCCCAACAGCACCATCAGTACCAACAG
CAGCAGCAACAACCGACAGTAAGATGGGTCCGATGCCTCGTGTCTGCAGA
GACAGGTAAAGCCTACTGCTTCGTGCGGACATTGAGGGAAGCTATTTTCG
GGGTGGTCAGACACGGTGTTATGCTTGAGAGAGATGAGAGGACTGCCGTA
GGAGGAGGAAGGGGGGAAGGAGGAAACGGAGGGTTTTATCGGTACCGGCC
GGATAAGCAGGTGGCGATCAAGTGTATGGACAAAATGAAAGTTTTGGAGC
AGAGGGGGAGAATACGAGAAGATCCGATGAATGAGTTGTCGGCCCTTCAG
CTATTGCAGCAGGGGGGGGGGCATGCGAATGTCCAGCAACTGTTGGAGTG
TCTGGAAGACGACGAGAATCTGTATTCAATTTGCCCGTTCTATGCGGGGG
GGGAGCTGTTTTCAGTGATTGAGCAGAGGGGAAGCGGCTTGGGAGAGGAG
AGGGCACGGGTTTTGTTTAGACAAATTTGTGCGGGTTTGGAGTACATGCA
TGAGAAAAGGTTGTGTCATCGGGATATGAGTCTAGAGAACATTCTGGTCG
ATTCCAGCAGTGATGGAATCATTATTGACATGGGCATGTGTTTGCGGGTG
CCCCTCCCTCCTGTGCTCCCTCCCTGTTCTTCCCAACAGCAACCTCGACA
CCTTATGCACAAGGTGCTGCTCAAGAAGCAAGGACAATGCGGCAAAATAA
CTTACATGGATCCTCTCGTCTTCAAAAACCAGGACTTCGATGGCTTTTCC
GTCGATATGTGGGCATGTGGTATCATCTTATTCATCCTCTTAGCAGGCGT
CCCTCCATTGGAATTACCTTCAATGACCGACCCGAGGTTCAAGATGATCG
CCGCGGGGAGATTGAATGTATTGCTTAACACATGGCAACTCGCCTTGAGT
GAAGATGCCAGAAATTTGTTGGGGAGACTGTTGAACGTCAACCCGGAGGA
GAGAGCGTCGATGGAGGAGGTACGGGGGCATAGATGGATGGTGGGTTAAA
GTGATTTTAATGGAGAAGGAAATGGACGAGAGTCAGGTCAGGAGAATGAG
AAGGAAAGTCAGGAAAGAAGATAACGTGTATATACTTTAGTCAGATTACA
AATGAGATGAGAGATTACACAAGCTCAGCGATACAATGTATGACAACTGA
TAAAGCAAAGAAATGTTTAAAGGACAAGCAATGAGTGGGGATATGGCACG
TTCATTTGTCTTATGTCAGCAACGGGTCATGGTTCAAAAACGTCGGACAT
TAAATGAGATGTTGGAAGCGTCCCGGACCCTCGATGCTCCTAGATGGGAT
CATACCCGTCACGGAATCTTACTGCTCTGCTCCTCCCCCTTGCCGACGAT
TAA
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protein sequence of jgi.p|Nanoce1779_2|603517

>mRNA_8663-protein ID=mRNA_8663-protein|Name=jgi.p|Nanoce1779_2|603517|organism=Nannochloropsis oceanica|type=polypeptide|length=423bp
MMPSIFTRKKATAPPPTPPPTAVPAPAPVQAPPTVPTALKAPTVPITPAA
LAPAVVVVMDPDDFPPPRITQGSIRDLQVLESQQHHQYQQQQQQPTVRWV
RCLVSAETGKAYCFVRTLREAIFGVVRHGVMLERDERTAVGGGRGEGGNG
GFYRYRPDKQVAIKCMDKMKVLEQRGRIREDPMNELSALQLLQQGGGHAN
VQQLLECLEDDENLYSICPFYAGGELFSVIEQRGSGLGEERARVLFRQIC
AGLEYMHEKRLCHRDMSLENILVDSSSDGIIIDMGMCLRVPLPPVLPPCS
SQQQPRHLMHKVLLKKQGQCGKITYMDPLVFKNQDFDGFSVDMWACGIIL
FILLAGVPPLELPSMTDPRFKMIAAGRLNVLLNTWQLALSEDARNLLGRL
LNVNPEERASMEEVRGHRWMVG*
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mRNA from alignment at scaffold_27:102390..104442-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_8663 ID=mRNA_8663|Name=jgi.p|Nanoce1779_2|603517|organism=Nannochloropsis oceanica|type=mRNA|length=2053bp|location=Sequence derived from alignment at scaffold_27:102390..104442- (Nannochloropsis oceanica)
AGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAAGACACCCAG
AAGCGAAGCGAAACAACTAATGCGTCTCTCTTCTACACACATATACACAA
CACACACCCCCACGCAGGTTTTCATTCCAATAGGTTGTTGTCATCAGCGC
TAGCCGTGAGCCTTCTCCCCTCATTCCTCCTTTAGCTTCTCTTCAAAATA
GAGGACACCAGTCAGAAGAGGAGGTGAAATCTGTAGGGTTAGGGTGAGCC
ACGCGAGGCAGGGATGGTGGCTAAGGAGCAACAAAGGCTTAGATATTCAG
TAGCAGTAGTGGCACCAGCAGTTGTAAAACAACGGAAAGGAAGGGAAGAA
GACAAACATAGCAGTAGCAGCAGCATCAGCAGCAATTGCGACGGTGAGGA
ATAGGACGAGCAGGACCAGGACTGAAGGGAATGATGCCGTCCATCTTCAC
CCGAAAGAAGGCCACAGCTCCGCCACCCACCCCACCCCCGACAGCAGTAC
CAGCACCAGCACCCGTGCAAGCACCACCAACAGTACCAACAGCACTTAAA
GCACCCACAGTACCAATAACACCAGCAGCACTAGCACCTGCAGTGGTAGT
AGTCATGGATCCCGATGACTTCCCCCCTCCCAGAATCACTCAAGGAAGTA
TCCGTGACCTCCAAGTCCTCGAATCCCAACAGCACCATCAGTACCAACAG
CAGCAGCAACAACCGACAGTAAGATGGGTCCGATGCCTCGTGTCTGCAGA
GACAGGTAAAGCCTACTGCTTCGTGCGGACATTGAGGGAAGCTATTTTCG
GGGTGGTCAGACACGGTGTTATGCTTGAGAGAGATGAGAGGACTGCCGTA
GGAGGAGGAAGGGGGGAAGGAGGAAACGGAGGGTTTTATCGGTACCGGCC
GGATAAGCAGGTGGCGATCAAGTGTATGGACAAAATGAAAGTTTTGGAGC
AGAGGGGGAGAATACGAGAAGATCCGATGAATGAGTTGTCGGCCCTTCAG
CTATTGCAGCAGGGGGGGGGGCATGCGAATGTCCAGCAACTGTTGGAGTG
TCTGGAAGACGACGAGAATCTGTATTCAATTTGCCCGTTCTATGCGGGGG
GGGAGCTGTTTTCAGTGATTGAGCAGAGGGGAAGCGGCTTGGGAGAGGAG
AGGGCACGGGTTTTGTTTAGACAAATTTGTGCGGGTTTGGAGTACATGCA
TGAGAAAAGGTTGTGTCATCGGGATATGAGTCTAGAGAACATTCTGGTCG
ATTCCAGCAGTGATGGAATCATTATTGACATGGGCATGTGTTTGCGGGTG
CCCCTCCCTCCTGTGCTCCCTCCCTGTTCTTCCCAACAGCAACCTCGACA
CCTTATGCACAAGGTGCTGCTCAAGAAGCAAGGACAATGCGGCAAAATAA
CTTACATGGATCCTCTCGTCTTCAAAAACCAGGACTTCGATGGCTTTTCC
GTCGATATGTGGGCATGTGGTATCATCTTATTCATCCTCTTAGCAGGCGT
CCCTCCATTGGAATTACCTTCAATGACCGACCCGAGGTTCAAGATGATCG
CCGCGGGGAGATTGAATGTATTGCTTAACACATGGCAACTCGCCTTGAGT
GAAGATGCCAGAAATTTGTTGGGGAGACTGTTGAACGTCAACCCGGAGGA
GAGAGCGTCGATGGAGGAGGTACGGGGGCATAGATGGATGGTGGGTTAAA
GTGATTTTAATGGAGAAGGAAATGGACGAGAGTCAGGTCAGGAGAATGAG
AAGGAAAGTCAGGAAAGAAGATAACGTGTATATACTTTAGTCAGATTACA
AATGAGATGAGAGATTACACAAGCTCAGCGATACAATGTATGACAACTGA
TAAAGCAAAGAAATGTTTAAAGGACAAGCAATGAGTGGGGATATGGCACG
TTCATTTGTCTTATGTCAGCAACGGGTCATGGTTCAAAAACGTCGGACAT
TAAATGAGATGTTGGAAGCGTCCCGGACCCTCGATGCTCCTAGATGGGAT
CATACCCGTCACGGAATCTTACTGCTCTGCTCCTCCCCCTTGCCGACGAT
TAA
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Coding sequence (CDS) from alignment at scaffold_27:102390..104442-

>mRNA_8663 ID=mRNA_8663|Name=jgi.p|Nanoce1779_2|603517|organism=Nannochloropsis oceanica|type=CDS|length=1269bp|location=Sequence derived from alignment at scaffold_27:102390..104442- (Nannochloropsis oceanica)
ATGATGCCGTCCATCTTCACCCGAAAGAAGGCCACAGCTCCGCCACCCAC
CCCACCCCCGACAGCAGTACCAGCACCAGCACCCGTGCAAGCACCACCAA
CAGTACCAACAGCACTTAAAGCACCCACAGTACCAATAACACCAGCAGCA
CTAGCACCTGCAGTGGTAGTAGTCATGGATCCCGATGACTTCCCCCCTCC
CAGAATCACTCAAGGAAGTATCCGTGACCTCCAAGTCCTCGAATCCCAAC
AGCACCATCAGTACCAACAGCAGCAGCAACAACCGACAGTAAGATGGGTC
CGATGCCTCGTGTCTGCAGAGACAGGTAAAGCCTACTGCTTCGTGCGGAC
ATTGAGGGAAGCTATTTTCGGGGTGGTCAGACACGGTGTTATGCTTGAGA
GAGATGAGAGGACTGCCGTAGGAGGAGGAAGGGGGGAAGGAGGAAACGGA
GGGTTTTATCGGTACCGGCCGGATAAGCAGGTGGCGATCAAGTGTATGGA
CAAAATGAAAGTTTTGGAGCAGAGGGGGAGAATACGAGAAGATCCGATGA
ATGAGTTGTCGGCCCTTCAGCTATTGCAGCAGGGGGGGGGGCATGCGAAT
GTCCAGCAACTGTTGGAGTGTCTGGAAGACGACGAGAATCTGTATTCAAT
TTGCCCGTTCTATGCGGGGGGGGAGCTGTTTTCAGTGATTGAGCAGAGGG
GAAGCGGCTTGGGAGAGGAGAGGGCACGGGTTTTGTTTAGACAAATTTGT
GCGGGTTTGGAGTACATGCATGAGAAAAGGTTGTGTCATCGGGATATGAG
TCTAGAGAACATTCTGGTCGATTCCAGCAGTGATGGAATCATTATTGACA
TGGGCATGTGTTTGCGGGTGCCCCTCCCTCCTGTGCTCCCTCCCTGTTCT
TCCCAACAGCAACCTCGACACCTTATGCACAAGGTGCTGCTCAAGAAGCA
AGGACAATGCGGCAAAATAACTTACATGGATCCTCTCGTCTTCAAAAACC
AGGACTTCGATGGCTTTTCCGTCGATATGTGGGCATGTGGTATCATCTTA
TTCATCCTCTTAGCAGGCGTCCCTCCATTGGAATTACCTTCAATGACCGA
CCCGAGGTTCAAGATGATCGCCGCGGGGAGATTGAATGTATTGCTTAACA
CATGGCAACTCGCCTTGAGTGAAGATGCCAGAAATTTGTTGGGGAGACTG
TTGAACGTCAACCCGGAGGAGAGAGCGTCGATGGAGGAGGTACGGGGGCA
TAGATGGATGGTGGGTTAA
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Synonyms
Publications