jgi.p|Nanoce1779_2|603514, mRNA_8662 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|603514
Unique NamemRNA_8662
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1473
Alignment locationscaffold_27:100377..101849 -

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Properties
Property NameValue
TranscriptId603600
TrackFilteredModels2
ProteinId603514
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_27supercontigscaffold_27:100377..101849 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|603514gene_8662Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|603514mRNA_8662-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_8662CDS_8662Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_8662 ID=mRNA_8662|Name=jgi.p|Nanoce1779_2|603514|organism=Nannochloropsis oceanica|type=mRNA|length=1473bp
CAGATAGTTCAAGGACCGTCATGCCATCCCCCACAGCCGATAGCAGCACC
ATCATCTCCACCACCACTAGCTGGTTCTCCTGGCTATTTCCTTCCTCCTC
CTCCGCACCTTCCTCCTCGTCAACACCTTCCTCCTCCTCCACATCGACCA
CCAATGCACCTGTCAACCCCCCTACCTTACCACCTACCTACGTCCAGAGC
TTCCACGACGATATAACGCCGCTTCACCGCATGAAGTACAACTCACTCGG
ACGTACTGGTATGCGTGTGTCAGCCCTGTCGCTCGGCGCCTCCTCTCTCG
GAGGAATGTTCACTGCGGTGGACGATGAAGACGAGGCTGTCGATGTGGTG
ATTCGAGCACTCAAATGTGGAATCAATTTGATCGATACTGCACCGTGGTA
CCAGAAAAGCGAGCGAATTTTAGGGTTGGCCTTGCGGGATGTGCCGCGTA
AAGCCTATTATATCAACACAAAGGTGGGACGGTACCCTATCTCTACCAAC
AGGAGCACCGGCGACGATGATAGAGAAGACGAGGAAGACCGCATGTTTGA
TTTCCGAGGGGAAACAGTCATTGAATCAGTCTACGAATCCCTTGCTACAT
TGGGTGTGTCTTACCTTGATTGTGTCCATGTGCATGACCCAGAGTTCTGT
CCTGATTTGAACATTATCCTGCATGAGACTTTGCCTGCTTTGAGAAAACT
TAAGAAAGAGGGTATCGTTCGCCATATTGGTGTAGCGGGCTACCCCCTGT
CTGTCCTCACTCGCCTCGTTCAAGAATCAACCGTGTCCCTTGATACAGTG
TTAAGTTATTGTCATCATACGTTATTAGATACCAGCTTGGTCGATAGCGG
CTTTCTCGCCTTATTGAGGGAAAAAGGAATCGGACTCATTAATGCAAGCC
CGTTCGCCATGGGTCTATTGACGCACAACGGCCCCCCAGCCTGGCATCCG
GCGACCAATTGCCAAAAGAAAGCGTGTCGTCAAGCCCTAGAGTACTGCAG
TGCCCAATCACATGTGCAGGGGCGAGAGATAAGTCTGGCGCGTCTCGCCT
TACGGTTCGCTTTCGCTGAGCCTCGGATTCCGACCACCTTGTTCTCGACT
TCCAGTGTCATGGAGTTGACTGAGAACCTACGAGATTATCACGCACCTTT
GACCAAGGCCGAAGAGAGTGTCATGCGGCACGTCTGTAAAGAGTATTTTG
CTGCACTCAAGAAGGGAGGGAAGGTGGGATGGGAGGGGGTGGAGGTAAAT
GCGTACTGGACGAGCGTGGGAAAACGACATATCCTTAAAAAAGTGTATGG
CCAACAAGTCACGGCACTGTCAAATGGTCGCGGTGGTGCCGCTACCACTG
CAGGGAGACGGAAACGACGACGATCGTAGAAGCGTGACGGAGAGGATGCT
GCGCACGGGGAAATGTATGAGTGATGACATGAACGGATGACAAAATAAAA
TGGAAAGAACCATTTCAAGGAAA
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protein sequence of jgi.p|Nanoce1779_2|603514

>mRNA_8662-protein ID=mRNA_8662-protein|Name=jgi.p|Nanoce1779_2|603514|organism=Nannochloropsis oceanica|type=polypeptide|length=453bp
MPSPTADSSTIISTTTSWFSWLFPSSSSAPSSSSTPSSSSTSTTNAPVNP
PTLPPTYVQSFHDDITPLHRMKYNSLGRTGMRVSALSLGASSLGGMFTAV
DDEDEAVDVVIRALKCGINLIDTAPWYQKSERILGLALRDVPRKAYYINT
KVGRYPISTNRSTGDDDREDEEDRMFDFRGETVIESVYESLATLGVSYLD
CVHVHDPEFCPDLNIILHETLPALRKLKKEGIVRHIGVAGYPLSVLTRLV
QESTVSLDTVLSYCHHTLLDTSLVDSGFLALLREKGIGLINASPFAMGLL
THNGPPAWHPATNCQKKACRQALEYCSAQSHVQGREISLARLALRFAFAE
PRIPTTLFSTSSVMELTENLRDYHAPLTKAEESVMRHVCKEYFAALKKGG
KVGWEGVEVNAYWTSVGKRHILKKVYGQQVTALSNGRGGAATTAGRRKRR
RS*
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mRNA from alignment at scaffold_27:100377..101849-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_8662 ID=mRNA_8662|Name=jgi.p|Nanoce1779_2|603514|organism=Nannochloropsis oceanica|type=mRNA|length=1473bp|location=Sequence derived from alignment at scaffold_27:100377..101849- (Nannochloropsis oceanica)
CAGATAGTTCAAGGACCGTCATGCCATCCCCCACAGCCGATAGCAGCACC
ATCATCTCCACCACCACTAGCTGGTTCTCCTGGCTATTTCCTTCCTCCTC
CTCCGCACCTTCCTCCTCGTCAACACCTTCCTCCTCCTCCACATCGACCA
CCAATGCACCTGTCAACCCCCCTACCTTACCACCTACCTACGTCCAGAGC
TTCCACGACGATATAACGCCGCTTCACCGCATGAAGTACAACTCACTCGG
ACGTACTGGTATGCGTGTGTCAGCCCTGTCGCTCGGCGCCTCCTCTCTCG
GAGGAATGTTCACTGCGGTGGACGATGAAGACGAGGCTGTCGATGTGGTG
ATTCGAGCACTCAAATGTGGAATCAATTTGATCGATACTGCACCGTGGTA
CCAGAAAAGCGAGCGAATTTTAGGGTTGGCCTTGCGGGATGTGCCGCGTA
AAGCCTATTATATCAACACAAAGGTGGGACGGTACCCTATCTCTACCAAC
AGGAGCACCGGCGACGATGATAGAGAAGACGAGGAAGACCGCATGTTTGA
TTTCCGAGGGGAAACAGTCATTGAATCAGTCTACGAATCCCTTGCTACAT
TGGGTGTGTCTTACCTTGATTGTGTCCATGTGCATGACCCAGAGTTCTGT
CCTGATTTGAACATTATCCTGCATGAGACTTTGCCTGCTTTGAGAAAACT
TAAGAAAGAGGGTATCGTTCGCCATATTGGTGTAGCGGGCTACCCCCTGT
CTGTCCTCACTCGCCTCGTTCAAGAATCAACCGTGTCCCTTGATACAGTG
TTAAGTTATTGTCATCATACGTTATTAGATACCAGCTTGGTCGATAGCGG
CTTTCTCGCCTTATTGAGGGAAAAAGGAATCGGACTCATTAATGCAAGCC
CGTTCGCCATGGGTCTATTGACGCACAACGGCCCCCCAGCCTGGCATCCG
GCGACCAATTGCCAAAAGAAAGCGTGTCGTCAAGCCCTAGAGTACTGCAG
TGCCCAATCACATGTGCAGGGGCGAGAGATAAGTCTGGCGCGTCTCGCCT
TACGGTTCGCTTTCGCTGAGCCTCGGATTCCGACCACCTTGTTCTCGACT
TCCAGTGTCATGGAGTTGACTGAGAACCTACGAGATTATCACGCACCTTT
GACCAAGGCCGAAGAGAGTGTCATGCGGCACGTCTGTAAAGAGTATTTTG
CTGCACTCAAGAAGGGAGGGAAGGTGGGATGGGAGGGGGTGGAGGTAAAT
GCGTACTGGACGAGCGTGGGAAAACGACATATCCTTAAAAAAGTGTATGG
CCAACAAGTCACGGCACTGTCAAATGGTCGCGGTGGTGCCGCTACCACTG
CAGGGAGACGGAAACGACGACGATCGTAGAAGCGTGACGGAGAGGATGCT
GCGCACGGGGAAATGTATGAGTGATGACATGAACGGATGACAAAATAAAA
TGGAAAGAACCATTTCAAGGAAA
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Coding sequence (CDS) from alignment at scaffold_27:100377..101849-

>mRNA_8662 ID=mRNA_8662|Name=jgi.p|Nanoce1779_2|603514|organism=Nannochloropsis oceanica|type=CDS|length=1359bp|location=Sequence derived from alignment at scaffold_27:100377..101849- (Nannochloropsis oceanica)
ATGCCATCCCCCACAGCCGATAGCAGCACCATCATCTCCACCACCACTAG
CTGGTTCTCCTGGCTATTTCCTTCCTCCTCCTCCGCACCTTCCTCCTCGT
CAACACCTTCCTCCTCCTCCACATCGACCACCAATGCACCTGTCAACCCC
CCTACCTTACCACCTACCTACGTCCAGAGCTTCCACGACGATATAACGCC
GCTTCACCGCATGAAGTACAACTCACTCGGACGTACTGGTATGCGTGTGT
CAGCCCTGTCGCTCGGCGCCTCCTCTCTCGGAGGAATGTTCACTGCGGTG
GACGATGAAGACGAGGCTGTCGATGTGGTGATTCGAGCACTCAAATGTGG
AATCAATTTGATCGATACTGCACCGTGGTACCAGAAAAGCGAGCGAATTT
TAGGGTTGGCCTTGCGGGATGTGCCGCGTAAAGCCTATTATATCAACACA
AAGGTGGGACGGTACCCTATCTCTACCAACAGGAGCACCGGCGACGATGA
TAGAGAAGACGAGGAAGACCGCATGTTTGATTTCCGAGGGGAAACAGTCA
TTGAATCAGTCTACGAATCCCTTGCTACATTGGGTGTGTCTTACCTTGAT
TGTGTCCATGTGCATGACCCAGAGTTCTGTCCTGATTTGAACATTATCCT
GCATGAGACTTTGCCTGCTTTGAGAAAACTTAAGAAAGAGGGTATCGTTC
GCCATATTGGTGTAGCGGGCTACCCCCTGTCTGTCCTCACTCGCCTCGTT
CAAGAATCAACCGTGTCCCTTGATACAGTGTTAAGTTATTGTCATCATAC
GTTATTAGATACCAGCTTGGTCGATAGCGGCTTTCTCGCCTTATTGAGGG
AAAAAGGAATCGGACTCATTAATGCAAGCCCGTTCGCCATGGGTCTATTG
ACGCACAACGGCCCCCCAGCCTGGCATCCGGCGACCAATTGCCAAAAGAA
AGCGTGTCGTCAAGCCCTAGAGTACTGCAGTGCCCAATCACATGTGCAGG
GGCGAGAGATAAGTCTGGCGCGTCTCGCCTTACGGTTCGCTTTCGCTGAG
CCTCGGATTCCGACCACCTTGTTCTCGACTTCCAGTGTCATGGAGTTGAC
TGAGAACCTACGAGATTATCACGCACCTTTGACCAAGGCCGAAGAGAGTG
TCATGCGGCACGTCTGTAAAGAGTATTTTGCTGCACTCAAGAAGGGAGGG
AAGGTGGGATGGGAGGGGGTGGAGGTAAATGCGTACTGGACGAGCGTGGG
AAAACGACATATCCTTAAAAAAGTGTATGGCCAACAAGTCACGGCACTGT
CAAATGGTCGCGGTGGTGCCGCTACCACTGCAGGGAGACGGAAACGACGA
CGATCGTAG
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Synonyms
Publications