jgi.p|Nanoce1779_2|603513, mRNA_8661 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|603513
Unique Name	mRNA_8661
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1381
Alignment location	scaffold_27:98987..100367 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	603599
Track	FilteredModels2
ProteinId	603513

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_27	supercontig	scaffold_27:98987..100367 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|603513	gene_8661	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|603513	mRNA_8661-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_8661	CDS_8661	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_27:98987..100367+
coding sequence from alignment at scaffold_27:98987..100367+

mRNA sequence

>mRNA_8661 ID=mRNA_8661|Name=jgi.p|Nanoce1779_2|603513|organism=Nannochloropsis oceanica|type=mRNA|length=1381bp
GTAAGCCGTAAGAGGGAAAGAATAAGGAGGAGGATGGATGGGATGAGGGG
GTTGAAGAGAAAGAGCGGAGGAGGAGGAGGAGGAGGACACGAAAAGATAG
ATACCCCGAGGAAAGCTTCGGTCGCTCTAACATCTTCCAAACGAATCCAC
TTTTGATAAAAGTAATACACTCCCACATGAATGCACACACACACACACAC
ACATAGAGGGAGGGATGACACCTATTGCAGGGTTTGCCGCCTCCTCGCCT
TCCCGCCCTCCCATCCTCGCCCCCTCCCTCGACCAGGCGGCCAACATTCT
TCACTCTGCCTCTCGCCTTCTCATTTTTACAGGCGCAGGTATGAGCGCGG
ATAGTGGCATTTCAACTTTTCGAAAAGACAAGAACAGCTTCTGGGGTGGG
ATAGGTGGAGGGATGGCGTTAGCTTATTTTGGAACCCAGGTGGGGTGGAC
CTTGACTCCTGGGTTGGCATGGGCGAAATATGTGGACATGTTTTTGACGC
CCATTGCGGTTGCTCGCCCCCACGAGGGGCACTATGCATTGGTGGCGTTG
GTGGAGGAGAGGAAGGAAAATACGGAGGGAGGGAGGGACGTAGGGAGAGG
GAGGGAGGGAGAAGTGAAAGTGATTACGATGAATGTGGATGACTTGCACG
AGCGGGCGGGGGGAACGGGGTGGGAGGAGGAGGGAAAGAGTGAGACCGAG
AAGAATTGGAGGAGGGTTGTTCATTTGCACGGAAGCGTGGGACGGAATAT
TTGTGCGAAGCATGGGCTCTTGTCAGGACTGCCGTATTTTCCACGTAAGG
AAGAAAGATGCGAAGGACAAAACAGGGGCAGCAGCGTTGGTGAGACACGA
GGGAAGTCAGCTAGTGATTCCGAGGTAAAACAAGTGCTTAATGAATACAA
ACGATTCCGATGCCCTTCCTGCCACCGCGCGCCTCGTCCTGACATCGTCC
TCTTCGGCGAGAGTCTTCCCCAAGACGAATTTTCGCTTGCCACCCGCGCC
ATCGACAGACTTAACCCAGCCACCAATGATGCGCTGCTCGTCATAGGAAC
GACAGGAGGAGTATATCCGGCAGCAAGCCTACCGGAAAGAGCCTTAATGA
GAGGAGTGAGAATTATAGAGGTCAACATGCACCCCTCGCCAATCTCGGAA
GCAGCAGATGTCTTTTTGCAGGGAAGGGCGAAGGAAGTACTACCAGCGTT
ACTAGAGAGAGTACGAGAGAAGAGGGAGAAGGAAAAAAAGGGGGAAGAAC
GATGAGGTGGTGGAGGAAAGAGGAGCTATAGAGATAGTAAAGAGTACTAT
AAGACATAACATAGTGTGATAAGGCTAAGCCACTTACAAAAGGACTGAAA
AATTGAAAAAGAAGGCTACGCTGAAGGTTGC

protein sequence of jgi.p|Nanoce1779_2|603513

>mRNA_8661-protein ID=mRNA_8661-protein|Name=jgi.p|Nanoce1779_2|603513|organism=Nannochloropsis oceanica|type=polypeptide|length=347bp
MTPIAGFAASSPSRPPILAPSLDQAANILHSASRLLIFTGAGMSADSGIS
TFRKDKNSFWGGIGGGMALAYFGTQVGWTLTPGLAWAKYVDMFLTPIAVA
RPHEGHYALVALVEERKENTEGGRDVGRGREGEVKVITMNVDDLHERAGG
TGWEEEGKSETEKNWRRVVHLHGSVGRNICAKHGLLSGLPYFPRKEERCE
GQNRGSSVGETRGKSASDSEVKQVLNEYKRFRCPSCHRAPRPDIVLFGES
LPQDEFSLATRAIDRLNPATNDALLVIGTTGGVYPAASLPERALMRGVRI
IEVNMHPSPISEAADVFLQGRAKEVLPALLERVREKREKEKKGEER*

mRNA from alignment at scaffold_27:98987..100367+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_8661 ID=mRNA_8661|Name=jgi.p|Nanoce1779_2|603513|organism=Nannochloropsis oceanica|type=mRNA|length=1381bp|location=Sequence derived from alignment at scaffold_27:98987..100367+ (Nannochloropsis oceanica)
GTAAGCCGTAAGAGGGAAAGAATAAGGAGGAGGATGGATGGGATGAGGGG
GTTGAAGAGAAAGAGCGGAGGAGGAGGAGGAGGAGGACACGAAAAGATAG
ATACCCCGAGGAAAGCTTCGGTCGCTCTAACATCTTCCAAACGAATCCAC
TTTTGATAAAAGTAATACACTCCCACATGAATGCACACACACACACACAC
ACATAGAGGGAGGGATGACACCTATTGCAGGGTTTGCCGCCTCCTCGCCT
TCCCGCCCTCCCATCCTCGCCCCCTCCCTCGACCAGGCGGCCAACATTCT
TCACTCTGCCTCTCGCCTTCTCATTTTTACAGGCGCAGGTATGAGCGCGG
ATAGTGGCATTTCAACTTTTCGAAAAGACAAGAACAGCTTCTGGGGTGGG
ATAGGTGGAGGGATGGCGTTAGCTTATTTTGGAACCCAGGTGGGGTGGAC
CTTGACTCCTGGGTTGGCATGGGCGAAATATGTGGACATGTTTTTGACGC
CCATTGCGGTTGCTCGCCCCCACGAGGGGCACTATGCATTGGTGGCGTTG
GTGGAGGAGAGGAAGGAAAATACGGAGGGAGGGAGGGACGTAGGGAGAGG
GAGGGAGGGAGAAGTGAAAGTGATTACGATGAATGTGGATGACTTGCACG
AGCGGGCGGGGGGAACGGGGTGGGAGGAGGAGGGAAAGAGTGAGACCGAG
AAGAATTGGAGGAGGGTTGTTCATTTGCACGGAAGCGTGGGACGGAATAT
TTGTGCGAAGCATGGGCTCTTGTCAGGACTGCCGTATTTTCCACGTAAGG
AAGAAAGATGCGAAGGACAAAACAGGGGCAGCAGCGTTGGTGAGACACGA
GGGAAGTCAGCTAGTGATTCCGAGGTAAAACAAGTGCTTAATGAATACAA
ACGATTCCGATGCCCTTCCTGCCACCGCGCGCCTCGTCCTGACATCGTCC
TCTTCGGCGAGAGTCTTCCCCAAGACGAATTTTCGCTTGCCACCCGCGCC
ATCGACAGACTTAACCCAGCCACCAATGATGCGCTGCTCGTCATAGGAAC
GACAGGAGGAGTATATCCGGCAGCAAGCCTACCGGAAAGAGCCTTAATGA
GAGGAGTGAGAATTATAGAGGTCAACATGCACCCCTCGCCAATCTCGGAA
GCAGCAGATGTCTTTTTGCAGGGAAGGGCGAAGGAAGTACTACCAGCGTT
ACTAGAGAGAGTACGAGAGAAGAGGGAGAAGGAAAAAAAGGGGGAAGAAC
GATGAGGTGGTGGAGGAAAGAGGAGCTATAGAGATAGTAAAGAGTACTAT
AAGACATAACATAGTGTGATAAGGCTAAGCCACTTACAAAAGGACTGAAA
AATTGAAAAAGAAGGCTACGCTGAAGGTTGC

Coding sequence (CDS) from alignment at scaffold_27:98987..100367+

>mRNA_8661 ID=mRNA_8661|Name=jgi.p|Nanoce1779_2|603513|organism=Nannochloropsis oceanica|type=CDS|length=1041bp|location=Sequence derived from alignment at scaffold_27:98987..100367+ (Nannochloropsis oceanica)
ATGACACCTATTGCAGGGTTTGCCGCCTCCTCGCCTTCCCGCCCTCCCAT
CCTCGCCCCCTCCCTCGACCAGGCGGCCAACATTCTTCACTCTGCCTCTC
GCCTTCTCATTTTTACAGGCGCAGGTATGAGCGCGGATAGTGGCATTTCA
ACTTTTCGAAAAGACAAGAACAGCTTCTGGGGTGGGATAGGTGGAGGGAT
GGCGTTAGCTTATTTTGGAACCCAGGTGGGGTGGACCTTGACTCCTGGGT
TGGCATGGGCGAAATATGTGGACATGTTTTTGACGCCCATTGCGGTTGCT
CGCCCCCACGAGGGGCACTATGCATTGGTGGCGTTGGTGGAGGAGAGGAA
GGAAAATACGGAGGGAGGGAGGGACGTAGGGAGAGGGAGGGAGGGAGAAG
TGAAAGTGATTACGATGAATGTGGATGACTTGCACGAGCGGGCGGGGGGA
ACGGGGTGGGAGGAGGAGGGAAAGAGTGAGACCGAGAAGAATTGGAGGAG
GGTTGTTCATTTGCACGGAAGCGTGGGACGGAATATTTGTGCGAAGCATG
GGCTCTTGTCAGGACTGCCGTATTTTCCACGTAAGGAAGAAAGATGCGAA
GGACAAAACAGGGGCAGCAGCGTTGGTGAGACACGAGGGAAGTCAGCTAG
TGATTCCGAGGTAAAACAAGTGCTTAATGAATACAAACGATTCCGATGCC
CTTCCTGCCACCGCGCGCCTCGTCCTGACATCGTCCTCTTCGGCGAGAGT
CTTCCCCAAGACGAATTTTCGCTTGCCACCCGCGCCATCGACAGACTTAA
CCCAGCCACCAATGATGCGCTGCTCGTCATAGGAACGACAGGAGGAGTAT
ATCCGGCAGCAAGCCTACCGGAAAGAGCCTTAATGAGAGGAGTGAGAATT
ATAGAGGTCAACATGCACCCCTCGCCAATCTCGGAAGCAGCAGATGTCTT
TTTGCAGGGAAGGGCGAAGGAAGTACTACCAGCGTTACTAGAGAGAGTAC
GAGAGAAGAGGGAGAAGGAAAAAAAGGGGGAAGAACGATGA

Synonyms

Publications