jgi.p|Nanoce1779_2|603510, mRNA_8660 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|603510
Unique NamemRNA_8660
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length883
Alignment locationscaffold_27:97553..98577 +

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Properties
Property NameValue
TranscriptId603596
TrackFilteredModels2
ProteinId603510
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_27supercontigscaffold_27:97553..98577 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|603510gene_8660Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|603510mRNA_8660-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_8660CDS_8660Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_8660 ID=mRNA_8660|Name=jgi.p|Nanoce1779_2|603510|organism=Nannochloropsis oceanica|type=mRNA|length=883bp
ACAGACATTATTCAGGCAGCAGGAGCGCTGTTCCAAGCGCCTGATTCAGC
GATGTCCACCCCCGAAATGGAGCTACAAAACGCCTCGCTTCAAGCGGCGG
GCCGCTCCGGGTCAAATCCCTGGCAGCTTTTCCTCTATTTCATCTTTCCC
ATTCCTCTGGTCTTTCTAGTCCTCATCTCGTTGCCCTTTCCGGCGCGGTA
TCGGGCCAAGATTCGCGTGGGTATTTTGGCGGCCTTGAACAGGATTTCTT
TCCTTCGCTTCGACTACGGTGGGGCCAGCATTTCGCTCATCGCCATCATC
ATCCTTTTTGCCTTGCTGGGCCTTTTATTTTCAGCCAATGACTCTCTGAA
TGCCCGTGCCAGTGAAAACCAAGCATTATTCTTCGCAGAAAAGAAAGAAT
TGCGCTGTAAGCGTTGGCGGGCGGAGCGAAATTTCTGGTTGTCCGTTTTG
GGCTGTGTCTTGTGGTTGGTCTTGTTGAGAATTCAGACTTTGCTCATGGA
CGTCGGGCCGTTGGAAGAGAGGCTGAAGGGCGTGGAGGAGGAGAGGGACA
GCTTGGTGCAGGAAAAGAAAGAGAAGGAAGGGGTGCTCGAGCGCTTGCGG
GCGGCAGTGGAGGAGGGAGGGAGGGAAGGCAAGGAGAAGGAAGGGGTGAT
TTTGGCGTTGAAAGCAAAGGTCGGGGAGATGGACACGTTGAAGAAGAAAT
TGGCTACAGTGGAGGCTGAGAACGAAGATCTGAAGAGGGGGGCAAAGAAG
ACTAGCTGAGGTGAAAGAGAAGGGGAAGAAAGGGAGGGCGGGAAGTGTAA
TTCAGTGAGAGTGGGAAAGGAGGGTGGGAAGGAGGGAGGGAAGAGATAAG
TGGAAGGAAGGTGAGGGTGTAGCATAGGTGGGG
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protein sequence of jgi.p|Nanoce1779_2|603510

>mRNA_8660-protein ID=mRNA_8660-protein|Name=jgi.p|Nanoce1779_2|603510|organism=Nannochloropsis oceanica|type=polypeptide|length=236bp
MSTPEMELQNASLQAAGRSGSNPWQLFLYFIFPIPLVFLVLISLPFPARY
RAKIRVGILAALNRISFLRFDYGGASISLIAIIILFALLGLLFSANDSLN
ARASENQALFFAEKKELRCKRWRAERNFWLSVLGCVLWLVLLRIQTLLMD
VGPLEERLKGVEEERDSLVQEKKEKEGVLERLRAAVEEGGREGKEKEGVI
LALKAKVGEMDTLKKKLATVEAENEDLKRGAKKTS*
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mRNA from alignment at scaffold_27:97553..98577+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_8660 ID=mRNA_8660|Name=jgi.p|Nanoce1779_2|603510|organism=Nannochloropsis oceanica|type=mRNA|length=1025bp|location=Sequence derived from alignment at scaffold_27:97553..98577+ (Nannochloropsis oceanica)
ACAGACATTATTCAGGCAGCAGGAGCGCTGTTCCAAGCGCCTGATTCAGC
GATGTCCACCCCCGAAATGGAGCTACAAAACGCCTCGCTTCAAGCGGCGG
GCCGCTCCGGGTCAAATCCCTGGCAGCTTTTCCTCTATTTCATCTTTCCC
ATTCCTCTGGTCTTTCTAGTCCTCATCTCGTTGCCCTTTCCGGCGCGGTA
TCGGGCCAAGATTCGCGTGGGTATTTTGGTACGTCTTATGGGTCCTTATG
ATTGTCTGTAGGTGTAAAAATATGTGTGTATGATGAAAGGAGGAGGCTCG
ACGTCAGGCATCAACATGCATGGCTCAACTGGCCTCCCTCCGCTCCCTCC
TTCTTCTCCTTCCTTCCTAGGCGGCCTTGAACAGGATTTCTTTCCTTCGC
TTCGACTACGGTGGGGCCAGCATTTCGCTCATCGCCATCATCATCCTTTT
TGCCTTGCTGGGCCTTTTATTTTCAGCCAATGACTCTCTGAATGCCCGTG
CCAGTGAAAACCAAGCATTATTCTTCGCAGAAAAGAAAGAATTGCGCTGT
AAGCGTTGGCGGGCGGAGCGAAATTTCTGGTTGTCCGTTTTGGGCTGTGT
CTTGTGGTTGGTCTTGTTGAGAATTCAGACTTTGCTCATGGACGTCGGGC
CGTTGGAAGAGAGGCTGAAGGGCGTGGAGGAGGAGAGGGACAGCTTGGTG
CAGGAAAAGAAAGAGAAGGAAGGGGTGCTCGAGCGCTTGCGGGCGGCAGT
GGAGGAGGGAGGGAGGGAAGGCAAGGAGAAGGAAGGGGTGATTTTGGCGT
TGAAAGCAAAGGTCGGGGAGATGGACACGTTGAAGAAGAAATTGGCTACA
GTGGAGGCTGAGAACGAAGATCTGAAGAGGGGGGCAAAGAAGACTAGCTG
AGGTGAAAGAGAAGGGGAAGAAAGGGAGGGCGGGAAGTGTAATTCAGTGA
GAGTGGGAAAGGAGGGTGGGAAGGAGGGAGGGAAGAGATAAGTGGAAGGA
AGGTGAGGGTGTAGCATAGGTGGGG
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Coding sequence (CDS) from alignment at scaffold_27:97553..98577+

>mRNA_8660 ID=mRNA_8660|Name=jgi.p|Nanoce1779_2|603510|organism=Nannochloropsis oceanica|type=CDS|length=1416bp|location=Sequence derived from alignment at scaffold_27:97553..98577+ (Nannochloropsis oceanica)
ATGTCCACCCCCGAAATGGAGCTACAAAACGCCTCGCTTCAAGCGGCGGG
CCGCTCCGGGTCAAATCCCTGGCAGCTTTTCCTCTATTTCATCTTTCCCA
TTCCTCTGGTCTTTCTAGTCCTCATCTCGTTGCCCTTTCCGGCGCGGTAT
CGGGCCAAGATTCGCGTGGGTATTTTGGCGGCCTTGAACAGGATTTCTTT
CCTTCGCTTCGACTACGGTGGGGCCAGCATTTCGCTCATCGCCATCATCA
TCCTTTTTGCCTTGCTGGGCCTTTTATTTTCAGCCAATGACTCTCTGAAT
GCCCGTGCCAGTGAAAACCAAGCATTATTCTTCGCAGAAAAGAAAGAATT
GCGCTGTAAGCGTTGGCGGGCGGAGCGAAATTTCTGGTTGTCCGTTTTGG
GCTGTGTCTTGTGGTTGGTCTTGTTGAGAATTCAGACTTTGCTCATGGAC
GTCGGGCCGTTGGAAGAGAGGCTGAAGGGCGTGGAGGAGGAGAGGGACAG
CTTGGTGCAGGAAAAGAAAGAGAAGGAAGGGGTGCTCGAGCGCTTGCGGG
CGGCAGTGGAGGAGGGAGGGAGGGAAGGCAAGGAGAAGGAAGGGGTGATT
TTGGCGTTGAAAGCAAAGGTCGGGGAGATGGACACGTTGAAGAAGAAATT
GGCTACAGTGGAGGCTGAGAACGAAGATCTGAAGAGGGGGGCAAAGAAGA
CTAGCTGAATGTCCACCCCCGAAATGGAGCTACAAAACGCCTCGCTTCAA
GCGGCGGGCCGCTCCGGGTCAAATCCCTGGCAGCTTTTCCTCTATTTCAT
CTTTCCCATTCCTCTGGTCTTTCTAGTCCTCATCTCGTTGCCCTTTCCGG
CGCGGTATCGGGCCAAGATTCGCGTGGGTATTTTGGCGGCCTTGAACAGG
ATTTCTTTCCTTCGCTTCGACTACGGTGGGGCCAGCATTTCGCTCATCGC
CATCATCATCCTTTTTGCCTTGCTGGGCCTTTTATTTTCAGCCAATGACT
CTCTGAATGCCCGTGCCAGTGAAAACCAAGCATTATTCTTCGCAGAAAAG
AAAGAATTGCGCTGTAAGCGTTGGCGGGCGGAGCGAAATTTCTGGTTGTC
CGTTTTGGGCTGTGTCTTGTGGTTGGTCTTGTTGAGAATTCAGACTTTGC
TCATGGACGTCGGGCCGTTGGAAGAGAGGCTGAAGGGCGTGGAGGAGGAG
AGGGACAGCTTGGTGCAGGAAAAGAAAGAGAAGGAAGGGGTGCTCGAGCG
CTTGCGGGCGGCAGTGGAGGAGGGAGGGAGGGAAGGCAAGGAGAAGGAAG
GGGTGATTTTGGCGTTGAAAGCAAAGGTCGGGGAGATGGACACGTTGAAG
AAGAAATTGGCTACAGTGGAGGCTGAGAACGAAGATCTGAAGAGGGGGGC
AAAGAAGACTAGCTGA
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Synonyms
Publications