jgi.p|Nanoce1779_2|213076, mRNA_8657 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|213076
Unique NamemRNA_8657
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1254
Alignment locationscaffold_27:86504..87757 -

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Properties
Property NameValue
TranscriptId213162
TrackFilteredModels2
ProteinId213076
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_27supercontigscaffold_27:86504..87757 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|213076gene_8657Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|213076mRNA_8657-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_8657CDS_8657Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_8657 ID=mRNA_8657|Name=jgi.p|Nanoce1779_2|213076|organism=Nannochloropsis oceanica|type=mRNA|length=1254bp
ATCGACTACTTTTTGTGTAGTCAATCGGGCGTCCTGCACGTAGCGCCACC
GGCCACAATCGATCCTTTCGTGGGCAAAGGATACCCGCTGCTGGCCGATA
CAGCGTGGGGTGGTAATGCACACGACAACCTGGCGCCCGAGGACGTCCAG
GCGTGCATCAACCGGACGACAGGCCTAGCTGAGGGTCTTCTCCGTGCCTA
CTCACCGTGTGCTCAGATACATTTGTACCAGGCCCAACGCCCTGTTAAAG
TAGTTGCGCCGGGGCAGATTGGACTGTGGGACGTGTCTGTGATCACCACA
GCCACCGAGGTGCCAACTCCGGTGGTGGTGGGAGTCTCCATATTAGGTAC
GTCTTCCATTTATGGTTAGAAAATCGGGGTTCGGTTCATCGAGCAACCCC
CCCTCGCTTGTATTCGGTCAAAATAAAACAGGCAAGACAGCCGATGAGGC
CCCTTTCCTGGTCGAGGTGGAGCTGTGCGGCAGCACGTTCGTGTCGGATC
ATCACTGGCGGTGCAGTAATGAGCCACCCACTGATAACACCTGGCTGCTT
CCCACATTCCGGGAGAACTCTGACTGGAAGCCGGCGACATGGGCGAGATG
TGCGAGTTGTACGGAGGGGGCTGCCTTATTTGGCGCCATGGCTCCCGCCA
CCATGCGATCAAAAGCTGCAGCACAGACCCTAAATGCTGTAGCAGCCCAG
AAGATAAACAATAGAGCTCATCTCGAGCCAATTAATCAAGCGCCCCCACT
GCATTTCTTTTCTCAGGACGGCCGCCGCTACATTCAGCCCTCGCCTCGGT
TAGACCAAGAGGCTGAAGAAGCCTGGCGTGAATGGCAGCTGGCCAAAGAG
GAGGCCAACAGCGCATGGCGGGCATGGCGTCGTGCGAAGAAGCAGCAGCA
GCAGCAGCACAATGGAACTAGCATGGGCGATGGAACCACCATTTTATCGA
AGGATGAGCAGGATATCTTCGCTACTTTTATGGCGTCCAGCAGGAATAGT
ACAATCAACACCAATACCACCACTTCGTCGACGGACTGGAGGGATCATAT
GAACGTGACCGCGGCGGATGTAGCTTTGCAATGGGCCAAACCTCGCCCTA
CTCAGATACATAGTTATTATTGCCGTCTAGTCCTGCCCAATCCGGGAGTA
GTGGATGGGCTCGGCGCCACTACACGAGGACGTAGCGTGGTGGGCGGATG
AGGAAGTTTGAATTAGACAGAAAAGGGAGGAATTAAAAAAAGAAATAATA
TTGG
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protein sequence of jgi.p|Nanoce1779_2|213076

>mRNA_8657-protein ID=mRNA_8657-protein|Name=jgi.p|Nanoce1779_2|213076|organism=Nannochloropsis oceanica|type=polypeptide|length=280bp
MVRKSGFGSSSNPPSLVFGQNKTGKTADEAPFLVEVELCGSTFVSDHHWR
CSNEPPTDNTWLLPTFRENSDWKPATWARCASCTEGAALFGAMAPATMRS
KAAAQTLNAVAAQKINNRAHLEPINQAPPLHFFSQDGRRYIQPSPRLDQE
AEEAWREWQLAKEEANSAWRAWRRAKKQQQQQHNGTSMGDGTTILSKDEQ
DIFATFMASSRNSTINTNTTTSSTDWRDHMNVTAADVALQWAKPRPTQIH
SYYCRLVLPNPGVVDGLGATTRGRSVVGG*
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mRNA from alignment at scaffold_27:86504..87757-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_8657 ID=mRNA_8657|Name=jgi.p|Nanoce1779_2|213076|organism=Nannochloropsis oceanica|type=mRNA|length=1254bp|location=Sequence derived from alignment at scaffold_27:86504..87757- (Nannochloropsis oceanica)
ATCGACTACTTTTTGTGTAGTCAATCGGGCGTCCTGCACGTAGCGCCACC
GGCCACAATCGATCCTTTCGTGGGCAAAGGATACCCGCTGCTGGCCGATA
CAGCGTGGGGTGGTAATGCACACGACAACCTGGCGCCCGAGGACGTCCAG
GCGTGCATCAACCGGACGACAGGCCTAGCTGAGGGTCTTCTCCGTGCCTA
CTCACCGTGTGCTCAGATACATTTGTACCAGGCCCAACGCCCTGTTAAAG
TAGTTGCGCCGGGGCAGATTGGACTGTGGGACGTGTCTGTGATCACCACA
GCCACCGAGGTGCCAACTCCGGTGGTGGTGGGAGTCTCCATATTAGGTAC
GTCTTCCATTTATGGTTAGAAAATCGGGGTTCGGTTCATCGAGCAACCCC
CCCTCGCTTGTATTCGGTCAAAATAAAACAGGCAAGACAGCCGATGAGGC
CCCTTTCCTGGTCGAGGTGGAGCTGTGCGGCAGCACGTTCGTGTCGGATC
ATCACTGGCGGTGCAGTAATGAGCCACCCACTGATAACACCTGGCTGCTT
CCCACATTCCGGGAGAACTCTGACTGGAAGCCGGCGACATGGGCGAGATG
TGCGAGTTGTACGGAGGGGGCTGCCTTATTTGGCGCCATGGCTCCCGCCA
CCATGCGATCAAAAGCTGCAGCACAGACCCTAAATGCTGTAGCAGCCCAG
AAGATAAACAATAGAGCTCATCTCGAGCCAATTAATCAAGCGCCCCCACT
GCATTTCTTTTCTCAGGACGGCCGCCGCTACATTCAGCCCTCGCCTCGGT
TAGACCAAGAGGCTGAAGAAGCCTGGCGTGAATGGCAGCTGGCCAAAGAG
GAGGCCAACAGCGCATGGCGGGCATGGCGTCGTGCGAAGAAGCAGCAGCA
GCAGCAGCACAATGGAACTAGCATGGGCGATGGAACCACCATTTTATCGA
AGGATGAGCAGGATATCTTCGCTACTTTTATGGCGTCCAGCAGGAATAGT
ACAATCAACACCAATACCACCACTTCGTCGACGGACTGGAGGGATCATAT
GAACGTGACCGCGGCGGATGTAGCTTTGCAATGGGCCAAACCTCGCCCTA
CTCAGATACATAGTTATTATTGCCGTCTAGTCCTGCCCAATCCGGGAGTA
GTGGATGGGCTCGGCGCCACTACACGAGGACGTAGCGTGGTGGGCGGATG
AGGAAGTTTGAATTAGACAGAAAAGGGAGGAATTAAAAAAAGAAATAATA
TTGG
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Coding sequence (CDS) from alignment at scaffold_27:86504..87757-

>mRNA_8657 ID=mRNA_8657|Name=jgi.p|Nanoce1779_2|213076|organism=Nannochloropsis oceanica|type=CDS|length=840bp|location=Sequence derived from alignment at scaffold_27:86504..87757- (Nannochloropsis oceanica)
ATGGTTAGAAAATCGGGGTTCGGTTCATCGAGCAACCCCCCCTCGCTTGT
ATTCGGTCAAAATAAAACAGGCAAGACAGCCGATGAGGCCCCTTTCCTGG
TCGAGGTGGAGCTGTGCGGCAGCACGTTCGTGTCGGATCATCACTGGCGG
TGCAGTAATGAGCCACCCACTGATAACACCTGGCTGCTTCCCACATTCCG
GGAGAACTCTGACTGGAAGCCGGCGACATGGGCGAGATGTGCGAGTTGTA
CGGAGGGGGCTGCCTTATTTGGCGCCATGGCTCCCGCCACCATGCGATCA
AAAGCTGCAGCACAGACCCTAAATGCTGTAGCAGCCCAGAAGATAAACAA
TAGAGCTCATCTCGAGCCAATTAATCAAGCGCCCCCACTGCATTTCTTTT
CTCAGGACGGCCGCCGCTACATTCAGCCCTCGCCTCGGTTAGACCAAGAG
GCTGAAGAAGCCTGGCGTGAATGGCAGCTGGCCAAAGAGGAGGCCAACAG
CGCATGGCGGGCATGGCGTCGTGCGAAGAAGCAGCAGCAGCAGCAGCACA
ATGGAACTAGCATGGGCGATGGAACCACCATTTTATCGAAGGATGAGCAG
GATATCTTCGCTACTTTTATGGCGTCCAGCAGGAATAGTACAATCAACAC
CAATACCACCACTTCGTCGACGGACTGGAGGGATCATATGAACGTGACCG
CGGCGGATGTAGCTTTGCAATGGGCCAAACCTCGCCCTACTCAGATACAT
AGTTATTATTGCCGTCTAGTCCTGCCCAATCCGGGAGTAGTGGATGGGCT
CGGCGCCACTACACGAGGACGTAGCGTGGTGGGCGGATGA
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Synonyms
Publications