jgi.p|Nanoce1779_2|603497, mRNA_8656 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|603497
Unique NamemRNA_8656
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length255
Alignment locationscaffold_27:85387..85641 +

Link to JBrowse

Properties
Property NameValue
TranscriptId603583
TrackFilteredModels2
ProteinId603497
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_27supercontigscaffold_27:85387..85641 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|603497gene_8656Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|603497mRNA_8656-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_8656CDS_8656Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_8656 ID=mRNA_8656|Name=jgi.p|Nanoce1779_2|603497|organism=Nannochloropsis oceanica|type=mRNA|length=255bp
ATGGCCTCAGCCGGCTCCTGCTTGGTATTTTCACGTATTCTTGTCTCCTC
CACCTCCTGCGACTGCTGCTGCTGCTGCTGCTGCTGCCGTCCTTCCCGCA
GTGATGACGAGACGACGGGATTGAGCAAACAGAAAAGCAGGACAAGCAAA
ACCACAACTGGTGCCCGCTGTCGCAGCCACGGCGGCTGGCGCGCCCGACA
CAAGGGCATGCCGCAGACTGAAACAATCAGGCGACCTGGCATCGTAAATT
GGTGA
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protein sequence of jgi.p|Nanoce1779_2|603497

>mRNA_8656-protein ID=mRNA_8656-protein|Name=jgi.p|Nanoce1779_2|603497|organism=Nannochloropsis oceanica|type=polypeptide|length=85bp
MASAGSCLVFSRILVSSTSCDCCCCCCCCRPSRSDDETTGLSKQKSRTSK
TTTGARCRSHGGWRARHKGMPQTETIRRPGIVNW*
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mRNA from alignment at scaffold_27:85387..85641+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_8656 ID=mRNA_8656|Name=jgi.p|Nanoce1779_2|603497|organism=Nannochloropsis oceanica|type=mRNA|length=255bp|location=Sequence derived from alignment at scaffold_27:85387..85641+ (Nannochloropsis oceanica)
ATGGCCTCAGCCGGCTCCTGCTTGGTATTTTCACGTATTCTTGTCTCCTC
CACCTCCTGCGACTGCTGCTGCTGCTGCTGCTGCTGCCGTCCTTCCCGCA
GTGATGACGAGACGACGGGATTGAGCAAACAGAAAAGCAGGACAAGCAAA
ACCACAACTGGTGCCCGCTGTCGCAGCCACGGCGGCTGGCGCGCCCGACA
CAAGGGCATGCCGCAGACTGAAACAATCAGGCGACCTGGCATCGTAAATT
GGTGA
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Coding sequence (CDS) from alignment at scaffold_27:85387..85641+

>mRNA_8656 ID=mRNA_8656|Name=jgi.p|Nanoce1779_2|603497|organism=Nannochloropsis oceanica|type=CDS|length=255bp|location=Sequence derived from alignment at scaffold_27:85387..85641+ (Nannochloropsis oceanica)
ATGGCCTCAGCCGGCTCCTGCTTGGTATTTTCACGTATTCTTGTCTCCTC
CACCTCCTGCGACTGCTGCTGCTGCTGCTGCTGCTGCCGTCCTTCCCGCA
GTGATGACGAGACGACGGGATTGAGCAAACAGAAAAGCAGGACAAGCAAA
ACCACAACTGGTGCCCGCTGTCGCAGCCACGGCGGCTGGCGCGCCCGACA
CAAGGGCATGCCGCAGACTGAAACAATCAGGCGACCTGGCATCGTAAATT
GGTGA
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Synonyms
Publications