jgi.p|Nanoce1779_2|642021, mRNA_8651 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|642021
Unique NamemRNA_8651
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length576
Alignment locationscaffold_27:63976..65382 +

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Properties
Property NameValue
TranscriptId642107
TrackFilteredModels2
ProteinId642021
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_27supercontigscaffold_27:63976..65382 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|642021gene_8651Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|642021mRNA_8651-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_8651CDS_8651Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_8651 ID=mRNA_8651|Name=jgi.p|Nanoce1779_2|642021|organism=Nannochloropsis oceanica|type=mRNA|length=576bp
ATGGCACCACATAAAGAGTTGCTCGGTAGCTTGTGCTCGGTCAACCACGT
CTTAGCCGGCCACGAGTTAGACCGCAAGCGCTATCTTTTTATCAAGGGGA
AGGATGGCACCAAGACTCGGGGAGTGGCTTTGACAAAAGCCAGGCGATCT
GCGAGGACGGGATCGATTGTCACAGCAGCAGGGAGGGGAGGAGAAGGAGG
AGATGACCGTAGAAAAGGGGACGGCAGCGACGTCGGAGCACTAGGACAAG
CGGAAGCAATGATCGAGTCAGCAGCCGATTTCGTGGCCGACCTGCAAAAG
GACGAGCATATTTTCATCACCGACGTCAGGATCATCGCCATCCTTGTATA
TGTTCGCATCTTTTTGTCCAAGATGGTTCCCGTCCACGCCTCTTTCATGG
ACAAAGAGGCGCAGCATGGATCTAGGCAGGGGCGCCGCATCACACCGCAT
GTGGAGGCTTTTACGAAGACCAAAGAATACGAAGGATTCATAACGTTAGG
GCTCATGAAAAGCGGGGTGGCGAGCCTTTCAGAACAAGAGGCTTTAACCA
GCTCTCACCGTTTCCGCGAATCGTGA
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protein sequence of jgi.p|Nanoce1779_2|642021

>mRNA_8651-protein ID=mRNA_8651-protein|Name=jgi.p|Nanoce1779_2|642021|organism=Nannochloropsis oceanica|type=polypeptide|length=192bp
MAPHKELLGSLCSVNHVLAGHELDRKRYLFIKGKDGTKTRGVALTKARRS
ARTGSIVTAAGRGGEGGDDRRKGDGSDVGALGQAEAMIESAADFVADLQK
DEHIFITDVRIIAILVYVRIFLSKMVPVHASFMDKEAQHGSRQGRRITPH
VEAFTKTKEYEGFITLGLMKSGVASLSEQEALTSSHRFRES*
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mRNA from alignment at scaffold_27:63976..65382+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_8651 ID=mRNA_8651|Name=jgi.p|Nanoce1779_2|642021|organism=Nannochloropsis oceanica|type=mRNA|length=1407bp|location=Sequence derived from alignment at scaffold_27:63976..65382+ (Nannochloropsis oceanica)
ATGGCACCACATAAAGAGTTGCTCGGTAGCTTGTGCTCGGTCAACCACGT
CTTAGCCGGCCACGAGTTAGACCGCAAGCGCTATCTTTTTATCAAGGGGA
AGGATGGCACCAAGACGTATGTGAGGCTCACTGTACTACCGCGACTCTTC
TTCCCATATCGCCCGGTTGGTGGAGATGCACGAGGTCGACAATAGGTCAT
CTGCGCCTACCTTGTCAGTCCCGAAGTCGGGGAGTGGCTTTGACAAAAGC
CAGGCGATCTGCGAGGACGGGATCGATTGTCACAGCAGCAGGGAGGGGAG
GAGAAGGAGGAGATGACCGTAGAAAAGGGGACGGCAGCGACGTCGGAGCA
CTAGGACAAGCGGAAGCAATGATCGAGTCAGCAGCCGATTTCGTGGCCGA
CCTGCAAAAGGACGAGCATATTTTCATCACCGACGTCAGGATCATCGCCA
TCCTTGTATATGTTCGCATCTTTTTGTCCAAGATGGTTCCCGTCCACGCC
TCTTTCATGGACAAAGAGGCGGTACATGAGGCGCTGTGGCGTGTCATACG
AGCGCCATGCAAAGGCATCACATCCGGTCGTGTCAACCGAGGCGCTGTGG
CGCGTCATACACGCGCCAAGCAAAGCCATCCCATCCGGTCGTGTCAACCA
TGCCACAGCATCACTGTCACCCTATCAACCCCGAGGCTATATGGTGAGCA
AGCAGTACATAGAAGACCATGCGCCATGCCCTTTTTCCACTTGGATGGGC
CTTCCCCCACACGATTTGAAGTTCCACCTTCGCTTCCATATTTACTTCCT
GGGCCTTAAGTGGATGTTGCAGCAAGGCCGCGTTTCCTCCAAGAAGGCCA
AGAACGGAGACGAAACCCGCCCTCTATAGTCAGTGCTGCACAAGATGCTG
GACGGTATGATGGTCTCCACCTCCACCGGCCCCCGCAGCCGCACGACCTT
CACTGTTAACTCGCAGGCGTCGATCAGAAGGTGCTAGGGTCCTTGAGTGC
CACAAATGGTAATATTCACGCCCCACATGGCGCATCAAATGGGGATGCGG
GATGTTCAAAGAAGCGGAAGGGAACGAAGGGCCGGCGTTACCGCCCGGCG
AGCTGCCCAGCTCGCATGATCATGTCGCTGGGCAACATTCACAGAGCAGC
CAAGTTTCTGGAGAGAACCATTGGTGGCCACTGTTCTCCAAGCCGGAGAA
TCGCAGTGCATCTCCCTGGATTTCCTCCGCCCACAACCACAGCAGCATGG
ATCTAGGCAGGGGCGCCGCATCACACCGCATGTGGAGGCTTTTACGAAGA
CCAAAGAATACGAAGGATTCATAACGTTAGGGCTCATGAAAAGCGGGGTG
GCGAGCCTTTCAGAACAAGAGGCTTTAACCAGCTCTCACCGTTTCCGCGA
ATCGTGA
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Coding sequence (CDS) from alignment at scaffold_27:63976..65382+

>mRNA_8651 ID=mRNA_8651|Name=jgi.p|Nanoce1779_2|642021|organism=Nannochloropsis oceanica|type=CDS|length=1728bp|location=Sequence derived from alignment at scaffold_27:63976..65382+ (Nannochloropsis oceanica)
ATGGCACCACATAAAGAGTTGCTCGGTAGCTTGTGCTCGGTCAACCACGT
CTTAGCCGGCCACGAGTTAGACCGCAAGCGCTATCTTTTTATCAAGGGGA
AGGATGGCACCAAGACTCGGGGAGTGGCTTTGACAAAAGCCAGGCGATCT
GCGAGGACGGGATCGATTGTCACAGCAGCAGGGAGGGGAGGAGAAGGAGG
AGATGACCGTAGAAAAGGGGACGGCAGCGACGTCGGAGCACTAGGACAAG
CGGAAGCAATGATCGAGTCAGCAGCCGATTTCGTGGCCGACCTGCAAAAG
GACGAGCATATTTTCATCACCGACGTCAGGATCATCGCCATCCTTGTATA
TGTTCGCATCTTTTTGTCCAAGATGGTTCCCGTCCACGCCTCTTTCATGG
ACAAAGAGGCGCAGCATGGATCTAGGCAGGGGCGCCGCATCACACCGCAT
GTGGAGGCTTTTACGAAGACCAAAGAATACGAAGGATTCATAACGTTAGG
GCTCATGAAAAGCGGGGTGGCGAGCCTTTCAGAACAAGAGGCTTTAACCA
GCTCTCACCGTTTCCGCGAATCGTGAATGGCACCACATAAAGAGTTGCTC
GGTAGCTTGTGCTCGGTCAACCACGTCTTAGCCGGCCACGAGTTAGACCG
CAAGCGCTATCTTTTTATCAAGGGGAAGGATGGCACCAAGACTCGGGGAG
TGGCTTTGACAAAAGCCAGGCGATCTGCGAGGACGGGATCGATTGTCACA
GCAGCAGGGAGGGGAGGAGAAGGAGGAGATGACCGTAGAAAAGGGGACGG
CAGCGACGTCGGAGCACTAGGACAAGCGGAAGCAATGATCGAGTCAGCAG
CCGATTTCGTGGCCGACCTGCAAAAGGACGAGCATATTTTCATCACCGAC
GTCAGGATCATCGCCATCCTTGTATATGTTCGCATCTTTTTGTCCAAGAT
GGTTCCCGTCCACGCCTCTTTCATGGACAAAGAGGCGCAGCATGGATCTA
GGCAGGGGCGCCGCATCACACCGCATGTGGAGGCTTTTACGAAGACCAAA
GAATACGAAGGATTCATAACGTTAGGGCTCATGAAAAGCGGGGTGGCGAG
CCTTTCAGAACAAGAGGCTTTAACCAGCTCTCACCGTTTCCGCGAATCGT
GAATGGCACCACATAAAGAGTTGCTCGGTAGCTTGTGCTCGGTCAACCAC
GTCTTAGCCGGCCACGAGTTAGACCGCAAGCGCTATCTTTTTATCAAGGG
GAAGGATGGCACCAAGACTCGGGGAGTGGCTTTGACAAAAGCCAGGCGAT
CTGCGAGGACGGGATCGATTGTCACAGCAGCAGGGAGGGGAGGAGAAGGA
GGAGATGACCGTAGAAAAGGGGACGGCAGCGACGTCGGAGCACTAGGACA
AGCGGAAGCAATGATCGAGTCAGCAGCCGATTTCGTGGCCGACCTGCAAA
AGGACGAGCATATTTTCATCACCGACGTCAGGATCATCGCCATCCTTGTA
TATGTTCGCATCTTTTTGTCCAAGATGGTTCCCGTCCACGCCTCTTTCAT
GGACAAAGAGGCGCAGCATGGATCTAGGCAGGGGCGCCGCATCACACCGC
ATGTGGAGGCTTTTACGAAGACCAAAGAATACGAAGGATTCATAACGTTA
GGGCTCATGAAAAGCGGGGTGGCGAGCCTTTCAGAACAAGAGGCTTTAAC
CAGCTCTCACCGTTTCCGCGAATCGTGA
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Synonyms
Publications