jgi.p|Nanoce1779_2|603466, mRNA_8650 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|603466
Unique Name	mRNA_8650
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2286
Alignment location	scaffold_27:61252..63537 -

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Properties


Property Name	Value
TranscriptId	603552
Track	FilteredModels2
ProteinId	603466

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_27	supercontig	scaffold_27:61252..63537 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|603466	gene_8650	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|603466	mRNA_8650-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_8650	CDS_8650	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_27:61252..63537-
coding sequence from alignment at scaffold_27:61252..63537-

mRNA sequence

>mRNA_8650 ID=mRNA_8650|Name=jgi.p|Nanoce1779_2|603466|organism=Nannochloropsis oceanica|type=mRNA|length=2286bp
ACAGATAACATGGGCCGCGCTCTCCAAGGACGTCGCCTCACCGGCCCCCT
CCTCGCCATCGCCCTCATCCTCCTGGCCACCCATGCCCCCAAAGCCACTG
CCCGTGGCCTACGAAAGGATACAGAAGGAAAAGAGGAGAACAAACAACAA
GTCCGAGCCTCCAAACCCACGACGACCGCGACGTCGACGGCGACCATCCC
TCCCCAGCAAGCGACCGCAGCCTCTGTGGGTGCCACATTCTCATATGATC
CCGCTGAGGCTGCTGCAGCCCTGGAAGAAGAAATCGATCAAGCTCAGCTA
TCTGAATATGAGGCATTGAAAACCTTGCACGAAGACATGCTCATCGGGTT
GATGTCGGACTCCTCCTCAATCCCTCCCTCGTCCTCGTCCTCGTCCTCCG
CCATCATGCCCACAGCAGCGGCAGAGGAATTGGAGCTGAACCGATATCAA
ATCCCAAACAATGACGCCGTCCAAACTCTCCACGAAGACATGCTCATCTC
CCTGATGTCGTCCTCCTCCAGCCGGCCTCAACAAGCCTTCGTCCCTCAAC
CCGCCGACGGGCACCGTCGCCTCCAATTTCGAGGGATCCCGGGCATTCCA
AGAATCCCTGGAATTCCAGGCATCCCCCGAGTACCCGGTATGCCGGGGAT
CCCTCGAGGCATCCCTGGCATGGGCTACGTCAGGACTGGAGCCAGGGTCA
TCAACCAGGGCGTGAACGTCGTGCGACAAGGCGCCAACACCGCGCAGGAA
ATGAACCAGGTATGGAGGAGGAGAAACGAAGTTAGGTTGGAGAATAAGAA
GGGCCTTGGCTATGCGTGATTGAGAGGGAGGAAGGGAGGAAGGGAGGGAG
GGCTGAAAGGGTACTTTAAAGCTAGCCCTTGTCGTTCATCCAACTCGAAG
AGAAGACTTAAATCACCGTACCTCCTTCTCTTCCCTCTTTCACTCCTTCC
TTCCCGTCTTTCTTCCCTTCTTCCTTCTCTCGATCCCTATGTAGATGCGA
CAAGACTACGAACGTCGCTGTAACCTTTACCCTGGCGAGGCAGAATACCT
TTATGAAAAAGCCCTTGAGCAAGAGCAGCAACAGCAGAAGCAACAACAGC
AACAGCAACTAGAGGAGGGAGGGAGAAAATTGCAGCAACTGATCAATATG
GGTGCCAATGCTTTGGTGAGAGGTATGGCTGCCTATGGGAGAGATGCGGC
GTGCCCGGATGAGGAGCAGCGCCAGCAGTACTTGCAATTGAAGAAAGAAG
CGACCGATGCCTATGAGACTATGGTGGCTCCGCATAAAGAAATCCAGCTC
CAGCAGCACCAGCACCAGCGAATACTACTTCAGCAAGGGGATGGTGAGGT
TGAGTTGAGGGTGGTGGGAGGAGGGAGGGGAGCAGGGCTGGCGCACATGC
ACAGGCAGGCGCGGGCTGCTTACTCCCGTGAGGTGTTGTTGGAGGAGGGT
AAACAGGCAATGCCAGGTCCAGTGGAGGGAGCAGAGGTGGTAGCACGGCA
GGAGGAGTTCAAAGATTCAAACAGTGCGATCGACAAGACCAACAAGAACG
CGGAGTGGCTGAAGGAGGTGGAGGGGAAAACAGGTGAGGAAATGGAAGGG
AAAGAAGGAAAGGAGGTGGAGGGGAAGAAGGGAAAAGAGGTGGAGGGGAA
GAAGGGAAAGGTGGGAAAGAAAGGAAAGGCGCGGGTGACTTGGGACGATC
TCGATGACCTCGATATATTTGATAAACCGAAGGATGAAAGAGATGATGGA
GATGTCGGACCCTTTTAGAGGAAGGGGGGGGGGCAACAAGGAGGAATGGT
TAGAAGGAAGAAAGAGGGAAGAGAAAGGAAGACAGAGAATGGGAGACTAA
AAGACGGAAGATAGTAGGAAAATGGGGCGCAATGAGATACCTTCACTTTT
ATATTTAAAATGTTTATCTTGTTGTACGAAAGCGTGGGTTGTGGTCCTAT
TCTTGAGAATGCATGGAAATAAATGAGTGGAAACGGGATTAAGTACCAAT
GAAAAAGAAACTGACAGTTGTATTCATCTGTTGGTGTTGTGCGTGTTGTG
CATATATAAGTGCATGTTTCCTTCCTTGAGATTTATAAGAAGAAACATTT
TATTTTCGTGCGCGAGGAGGAGGAGACGACGAAGAGAAGTAGAAGCGAGC
AAAAGAAGAAAATGAAGGAAGGAGGGGAGAGTGGAAGGGACCAAAATAAG
AGGTGGTAGAAGAAGCCTAGAATGACAACCTACCCACTCGCCCGCCGACA
GTGCAAAGAAGAAAAGAGACCAACTGGATGCAAGAA

protein sequence of jgi.p|Nanoce1779_2|603466

>mRNA_8650-protein ID=mRNA_8650-protein|Name=jgi.p|Nanoce1779_2|603466|organism=Nannochloropsis oceanica|type=polypeptide|length=270bp
MGRALQGRRLTGPLLAIALILLATHAPKATARGLRKDTEGKEENKQQVRA
SKPTTTATSTATIPPQQATAASVGATFSYDPAEAAAALEEEIDQAQLSEY
EALKTLHEDMLIGLMSDSSSIPPSSSSSSSAIMPTAAAEELELNRYQIPN
NDAVQTLHEDMLISLMSSSSSRPQQAFVPQPADGHRRLQFRGIPGIPRIP
GIPGIPRVPGMPGIPRGIPGMGYVRTGARVINQGVNVVRQGANTAQEMNQ
VWRRRNEVRLENKKGLGYA*

mRNA from alignment at scaffold_27:61252..63537-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_8650 ID=mRNA_8650|Name=jgi.p|Nanoce1779_2|603466|organism=Nannochloropsis oceanica|type=mRNA|length=2286bp|location=Sequence derived from alignment at scaffold_27:61252..63537- (Nannochloropsis oceanica)
ACAGATAACATGGGCCGCGCTCTCCAAGGACGTCGCCTCACCGGCCCCCT
CCTCGCCATCGCCCTCATCCTCCTGGCCACCCATGCCCCCAAAGCCACTG
CCCGTGGCCTACGAAAGGATACAGAAGGAAAAGAGGAGAACAAACAACAA
GTCCGAGCCTCCAAACCCACGACGACCGCGACGTCGACGGCGACCATCCC
TCCCCAGCAAGCGACCGCAGCCTCTGTGGGTGCCACATTCTCATATGATC
CCGCTGAGGCTGCTGCAGCCCTGGAAGAAGAAATCGATCAAGCTCAGCTA
TCTGAATATGAGGCATTGAAAACCTTGCACGAAGACATGCTCATCGGGTT
GATGTCGGACTCCTCCTCAATCCCTCCCTCGTCCTCGTCCTCGTCCTCCG
CCATCATGCCCACAGCAGCGGCAGAGGAATTGGAGCTGAACCGATATCAA
ATCCCAAACAATGACGCCGTCCAAACTCTCCACGAAGACATGCTCATCTC
CCTGATGTCGTCCTCCTCCAGCCGGCCTCAACAAGCCTTCGTCCCTCAAC
CCGCCGACGGGCACCGTCGCCTCCAATTTCGAGGGATCCCGGGCATTCCA
AGAATCCCTGGAATTCCAGGCATCCCCCGAGTACCCGGTATGCCGGGGAT
CCCTCGAGGCATCCCTGGCATGGGCTACGTCAGGACTGGAGCCAGGGTCA
TCAACCAGGGCGTGAACGTCGTGCGACAAGGCGCCAACACCGCGCAGGAA
ATGAACCAGGTATGGAGGAGGAGAAACGAAGTTAGGTTGGAGAATAAGAA
GGGCCTTGGCTATGCGTGATTGAGAGGGAGGAAGGGAGGAAGGGAGGGAG
GGCTGAAAGGGTACTTTAAAGCTAGCCCTTGTCGTTCATCCAACTCGAAG
AGAAGACTTAAATCACCGTACCTCCTTCTCTTCCCTCTTTCACTCCTTCC
TTCCCGTCTTTCTTCCCTTCTTCCTTCTCTCGATCCCTATGTAGATGCGA
CAAGACTACGAACGTCGCTGTAACCTTTACCCTGGCGAGGCAGAATACCT
TTATGAAAAAGCCCTTGAGCAAGAGCAGCAACAGCAGAAGCAACAACAGC
AACAGCAACTAGAGGAGGGAGGGAGAAAATTGCAGCAACTGATCAATATG
GGTGCCAATGCTTTGGTGAGAGGTATGGCTGCCTATGGGAGAGATGCGGC
GTGCCCGGATGAGGAGCAGCGCCAGCAGTACTTGCAATTGAAGAAAGAAG
CGACCGATGCCTATGAGACTATGGTGGCTCCGCATAAAGAAATCCAGCTC
CAGCAGCACCAGCACCAGCGAATACTACTTCAGCAAGGGGATGGTGAGGT
TGAGTTGAGGGTGGTGGGAGGAGGGAGGGGAGCAGGGCTGGCGCACATGC
ACAGGCAGGCGCGGGCTGCTTACTCCCGTGAGGTGTTGTTGGAGGAGGGT
AAACAGGCAATGCCAGGTCCAGTGGAGGGAGCAGAGGTGGTAGCACGGCA
GGAGGAGTTCAAAGATTCAAACAGTGCGATCGACAAGACCAACAAGAACG
CGGAGTGGCTGAAGGAGGTGGAGGGGAAAACAGGTGAGGAAATGGAAGGG
AAAGAAGGAAAGGAGGTGGAGGGGAAGAAGGGAAAAGAGGTGGAGGGGAA
GAAGGGAAAGGTGGGAAAGAAAGGAAAGGCGCGGGTGACTTGGGACGATC
TCGATGACCTCGATATATTTGATAAACCGAAGGATGAAAGAGATGATGGA
GATGTCGGACCCTTTTAGAGGAAGGGGGGGGGGCAACAAGGAGGAATGGT
TAGAAGGAAGAAAGAGGGAAGAGAAAGGAAGACAGAGAATGGGAGACTAA
AAGACGGAAGATAGTAGGAAAATGGGGCGCAATGAGATACCTTCACTTTT
ATATTTAAAATGTTTATCTTGTTGTACGAAAGCGTGGGTTGTGGTCCTAT
TCTTGAGAATGCATGGAAATAAATGAGTGGAAACGGGATTAAGTACCAAT
GAAAAAGAAACTGACAGTTGTATTCATCTGTTGGTGTTGTGCGTGTTGTG
CATATATAAGTGCATGTTTCCTTCCTTGAGATTTATAAGAAGAAACATTT
TATTTTCGTGCGCGAGGAGGAGGAGACGACGAAGAGAAGTAGAAGCGAGC
AAAAGAAGAAAATGAAGGAAGGAGGGGAGAGTGGAAGGGACCAAAATAAG
AGGTGGTAGAAGAAGCCTAGAATGACAACCTACCCACTCGCCCGCCGACA
GTGCAAAGAAGAAAAGAGACCAACTGGATGCAAGAA

Coding sequence (CDS) from alignment at scaffold_27:61252..63537-

>mRNA_8650 ID=mRNA_8650|Name=jgi.p|Nanoce1779_2|603466|organism=Nannochloropsis oceanica|type=CDS|length=810bp|location=Sequence derived from alignment at scaffold_27:61252..63537- (Nannochloropsis oceanica)
ATGGGCCGCGCTCTCCAAGGACGTCGCCTCACCGGCCCCCTCCTCGCCAT
CGCCCTCATCCTCCTGGCCACCCATGCCCCCAAAGCCACTGCCCGTGGCC
TACGAAAGGATACAGAAGGAAAAGAGGAGAACAAACAACAAGTCCGAGCC
TCCAAACCCACGACGACCGCGACGTCGACGGCGACCATCCCTCCCCAGCA
AGCGACCGCAGCCTCTGTGGGTGCCACATTCTCATATGATCCCGCTGAGG
CTGCTGCAGCCCTGGAAGAAGAAATCGATCAAGCTCAGCTATCTGAATAT
GAGGCATTGAAAACCTTGCACGAAGACATGCTCATCGGGTTGATGTCGGA
CTCCTCCTCAATCCCTCCCTCGTCCTCGTCCTCGTCCTCCGCCATCATGC
CCACAGCAGCGGCAGAGGAATTGGAGCTGAACCGATATCAAATCCCAAAC
AATGACGCCGTCCAAACTCTCCACGAAGACATGCTCATCTCCCTGATGTC
GTCCTCCTCCAGCCGGCCTCAACAAGCCTTCGTCCCTCAACCCGCCGACG
GGCACCGTCGCCTCCAATTTCGAGGGATCCCGGGCATTCCAAGAATCCCT
GGAATTCCAGGCATCCCCCGAGTACCCGGTATGCCGGGGATCCCTCGAGG
CATCCCTGGCATGGGCTACGTCAGGACTGGAGCCAGGGTCATCAACCAGG
GCGTGAACGTCGTGCGACAAGGCGCCAACACCGCGCAGGAAATGAACCAG
GTATGGAGGAGGAGAAACGAAGTTAGGTTGGAGAATAAGAAGGGCCTTGG
CTATGCGTGA

Synonyms

Publications