jgi.p|Nanoce1779_2|213051, mRNA_8649 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|213051
Unique Name	mRNA_8649
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1434
Alignment location	scaffold_27:58183..60766 -

Link to JBrowse

Properties


Property Name	Value
TranscriptId	213137
Track	FilteredModels2
ProteinId	213051

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_27	supercontig	scaffold_27:58183..60766 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|213051	gene_8649	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|213051	mRNA_8649-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_8649	CDS_8649	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_27:58183..60766-
coding sequence from alignment at scaffold_27:58183..60766-

mRNA sequence

>mRNA_8649 ID=mRNA_8649|Name=jgi.p|Nanoce1779_2|213051|organism=Nannochloropsis oceanica|type=mRNA|length=1434bp
ATACCCTATCGCTTTCTCACACACACGCGCGCACACAGGACATTTGCAAG
ATCCCACACTGGGAAAAGCTGCAAGCAAGCTCGCTCTGAGCAATTAGCAA
AGCCGTGCGAGCCATGCCCCTCCCTGCAGGTCCGTCAGCTCGTCCTCCGC
TTTGATAACTACGTCCCCACCACCACCAGCCTCGACAATACCGCTGGGGC
AGCCATTTCATTTCTCTTGTCGTCTGCCTTCATTCCAGTAAACCACCACC
TACACCCTCCTTCTCCTCGCACGTCTTCCCAGTCCTCCACCTCCAATCAC
ACGCCACTACACCAGAACAATGTCATCCTTATTCACTGCCCGTATCCTCG
CCCTTACAATAGCCCCATCCCTCCTTCTTCTCATCACCGGCCCGCCATGC
CTTGTCCCCCCTCCCGAAGCCAGCATCATTCTTGCCTCATCCATAGCGAA
AATCGGCGGGGACAACATAGCACTGGCGGGCCTCGTCTCAGACGTCGTTT
CTCGTTACCCCTCATCCCTTCACGCACCTGAAGACTTCACCGCATGGCCT
TGGGTGCCTCCCCTTATGCACGCGGCTAAGACAGGGAACATGGCGTTGGT
GAACATCCTGCTCGAAAACGGGGTAGATCCCATGCGAGGGACTGCTGCCC
TGCCGGGGGGAGGGAGGAAGGGATGGCAGCAAGGGAACGAGACGCCATTA
TGGGTGGCATGTAGAGAGGGGCATGTGATTGTCGTGGAAAGATTATTAGA
GGAGGTGGGACAAAGCCCTCCCTCCGTTCCTGCATCGTCCCATTCCTCGG
TGGAGAAGGAGACGGAGCAAGAGCAGCAGCAACATCAGGGAGGAGGAGGG
GAGGGGGACAGAAAGGGAGGACGGGGGGGACAAGGACGACGACGATACCG
AGAGAGGTTAGAGATTGAGAGGTGTGTGACAACAGAAGGTGTGACCCCCT
TGATGGTCGCGAGTGAGGGAGGGCACGTGGAAGTGGTGCGGGTGCTCTTG
ACAAGGTTTTACTCAAGCCCTCCCTCCTCCGTTGGTCCCCTCCACCATTC
CTCTCTGCCTCGTCTTCGGGCTCGGCTCAAGGGAAAGGGCAGGTGCTGCC
CGCTTGTCTTTCCTCTCTTCCTTCCTCAGCTTCGACCGTTCCTACCCCCC
TTCCTCCCTTCCTACCTTCATCTCTTTCCCCTTTCTCCCTGGCTTGTTTC
GCGGGGAAATCAGAGGTTGTGAAGCTCATGGTTTTGGAGGAGGGTTGGAT
GAAGGGGAAGAACGATGGAGGAAAAGAGTCTGTGTGGGAGGAGAAGAAAG
AAGATGAGGAGGAGGAGGCAGTGGAGGATCCCATAAATTTTAGATGGGAC
GAGAGCAAGGGAGAGGGGGAGGGAGGGAGAGTGGGAAGGAGGGAAGGAGG
AGGGTGGAAGATGGCACTGGAGGCGATTTGGGAG

protein sequence of jgi.p|Nanoce1779_2|213051

>mRNA_8649-protein ID=mRNA_8649-protein|Name=jgi.p|Nanoce1779_2|213051|organism=Nannochloropsis oceanica|type=polypeptide|length=301bp
MSSLFTARILALTIAPSLLLLITGPPCLVPPPEASIILASSIAKIGGDNI
ALAGLVSDVVSRYPSSLHAPEDFTAWPWVPPLMHAAKTGNMALVNILLEN
GVDPMRGTAALPGGGRKGWQQGNETPLWVACREGHVIVVERLLEEVGQSP
PSVPASSHSSVEKETEQEQQQHQGGGGEGDRKGGRGGQGRRRYRERLEIE
RCVTTEGVTPLMVASEGGHVEVVRVLLTRFYSSPPSSVGPLHHSSLPRLR
ARLKGKGRCCPLVFPLFLPQLRPFLPPFLPSYLHLFPLSPWLVSRGNQRL
*

mRNA from alignment at scaffold_27:58183..60766-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_8649 ID=mRNA_8649|Name=jgi.p|Nanoce1779_2|213051|organism=Nannochloropsis oceanica|type=mRNA|length=2584bp|location=Sequence derived from alignment at scaffold_27:58183..60766- (Nannochloropsis oceanica)
ATACCCTATCGCTTTCTCACACACACGCGCGCACACAGGACATTTGCAAG
ATCCCACACTGGGAAAAGCTGCAAGCAAGCTCGCTCTGAGCAATTAGCAA
AGCCGTGCGAGCCATGCCCCTCCCTGCAGGTCCGTCAGCTCGTCCTCCGC
TTTGATAACTACGTCCCCACCACCACCAGCCTCGACAATACCGCTGGGGC
AGCCATTTCATTTCTCTTGTCGTCTGCCTTCATTCCAGTAAACCACCACC
TACACCCTCCTTCTCCTCGCACGTCTTCCCAGTCCTCCACCTCCAATCAC
ACGCCACTACACCAGAACAATGTCATCCTTATTCACTGCCCGTATCCTCG
CCCTTACAATAGCCCCATCCCTCCTTCTTCTCATCACCGGCCCGCCATGC
CTTGTCCCCCCTCCCGAAGCCAGCATCATTCTTGCCTCATCCATAGCGAA
AATCGGCGGGGACAACATAGGTAAGTCTTTTCCCCCACAACGCAGAAAAT
ACGTTTTATGCAAAAGAAGGAGAGGCAACAAAAGCCAGGAAATGCTTCGA
CTCAGAGTGGCCATCAAACGACCGATCTCTCCCTTTTCTCTCTTCCTCCC
TCCCTCCCTAGCACTGGCGGGCCTCGTCTCAGACGTCGTTTCTCGTTACC
CCTCATCCCTTCACGCACCTGAAGACTTCACCGCATGGCCTTGGGTGCCT
CCCCTTATGCACGCGGCTAAGACAGGGAACATGGCGTTGGTGAACATCCT
GCTCGAAAACGGGGTAGATCCCATGCGAGGGACTGCTGCCCTGCCGGGGG
GAGGGAGGAAGGGATGGCAGCAAGGGAACGAGACGCCATTATGGGTGGCA
TGTAGAGAGGGGCATGTGATTGTCGTGGAAAGATTATTAGAGGAGGTGGG
ACAAAGCCCTCCCTCCGTTCCTGCATCGTCCCATTCCTCGGTGGAGAAGG
AGACGGAGCAAGAGCAGCAGCAACATCAGGGAGGAGGAGGGGAGGGGGAC
AGAAAGGGAGGACGGGGGGGACAAGGACGACGACGATACCGAGAGAGGTT
AGAGATTGAGAGGTGTGTGACAACAGAAGGTGTGACCCCCTTGATGGTCG
CGAGTGAGGGAGGGCACGTGGAAGTGGTGCGGGTGCTCTTGACAAGGTTT
TACTCAAGCCCTCCCTCCTCCGTTGGTCCCCTCCACCATTCCTCTCGGGT
TTTGAATATGAATTTGAATTTAAACGCGAATTCAAACAAAGGCTTTACTG
CCCTTCACCTTGCGTGTCGGCAGGATCGATCGGATGTCTTGTTCCTCCTC
CTGAAAGCAGGGGCAAAGATGGACGACAGGGTAGGCAGGCGGGAGGGAGG
GAGGGAGGGAGGCAACAGGGAGGAATTTATGGCTGGATGGGGGGAAGTAG
AGGAGGACAGGGGGTTGGAAGGGAGTGCGCTGTGGGGCTATAATGGATGG
GAGGTGCTGGTCGCATCCAACGCAACAGAGAGCCTATTGTCCCTCCTCTC
CGCTTCTTCCTTCGGTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCTTCT
ACAACGACTTGGTGTACGTGGCAGTGGCACATCAGCGGGTCCACATGGTG
AAGCTGCTACTGGCACTGCATAGGCAGGAGGTAGAGAAGGCGCAGCAGCA
GCAGCAACAACAGGAGGAGGAGAAGGAGGAGAAAAAGGAGGGAGGAAAGG
AGGAAGGAAAGGAGGACGAGACGCCACAGTATCACTCAGAATTCAAATGT
CCCCTCGTGTTGGCTGCCAGTCTACTCCACTCAGCCTCCTCCTTCCCCTC
CTCCCCCTCCTCTTCCCTTGTCTCCATCATGACCCTCCTACTCCAACACC
CCTTCCCCCTCCTCCACGCTCCTCACACCACCGCCACCCCCTCCCTCCCT
TCCCCCCCCTCCCTCCTCCTCCACCACACTGATCCTTATGGATGGACTGC
TCTTCATCACGCCGCTTGGGCTGGAGACACGGACGCGGTTTCTCTCCTCC
TCCGGGCAGGTGCTTTCTCCTCCCCTTTCCCCTTTCCTTCCTCCCTCTCT
GCCTCGTCTTCGGGCTCGGCTCAAGGGAAAGGGCAGGTGCTGCCCGCTTG
TCTTTCCTCTCTTCCTTCCTCAGCTTCGACCGTTCCTACCCCCCTTCCTC
CCTTCCTACCTTCATCTCTTTCCCCTTTCTCCCTGGCTTGTTTCGCGGGG
AAATCAGAGGTTGTGAAGCTCATGGTTTTGGAGTGGGGGGTGGACCCATG
GGAAGGAAGGGAGGGAGGGAAGGAGAGAGGGATGAATGGGTGGTTGCCGG
TGGAGGTGGCGACTGAGGGAGGGAGGGAGGAGGTGGTGAAATATTTGTTG
AGTCTGCCGGGGGCGGAGGGATGGAGGGAGGGCGGGAGGGAGGGTTGGAT
GAAGGGGAAGAACGATGGAGGAAAAGAGTCTGTGTGGGAGGAGAAGAAAG
AAGATGAGGAGGAGGAGGCAGTGGAGGATCCCATAAATTTTAGATGGGAC
GAGAGCAAGGGAGAGGGGGAGGGAGGGAGAGTGGGAAGGAGGGAAGGAGG
AGGGTGGAAGATGGCACTGGAGGCGATTTGGGAG

Coding sequence (CDS) from alignment at scaffold_27:58183..60766-

>mRNA_8649 ID=mRNA_8649|Name=jgi.p|Nanoce1779_2|213051|organism=Nannochloropsis oceanica|type=CDS|length=2709bp|location=Sequence derived from alignment at scaffold_27:58183..60766- (Nannochloropsis oceanica)
CCTCTCTGCCTCGTCTTCGGGCTCGGCTCAAGGGAAAGGGCAGGTGCTGC
CCGCTTGTCTTTCCTCTCTTCCTTCCTCAGCTTCGACCGTTCCTACCCCC
CTTCCTCCCTTCCTACCTTCATCTCTTTCCCCTTTCTCCCTGGCTTGTTT
CGCGGGGAAATCAGAGGTTGTGACACTGGCGGGCCTCGTCTCAGACGTCG
TTTCTCGTTACCCCTCATCCCTTCACGCACCTGAAGACTTCACCGCATGG
CCTTGGGTGCCTCCCCTTATGCACGCGGCTAAGACAGGGAACATGGCGTT
GGTGAACATCCTGCTCGAAAACGGGGTAGATCCCATGCGAGGGACTGCTG
CCCTGCCGGGGGGAGGGAGGAAGGGATGGCAGCAAGGGAACGAGACGCCA
TTATGGGTGGCATGTAGAGAGGGGCATGTGATTGTCGTGGAAAGATTATT
AGAGGAGGTGGGACAAAGCCCTCCCTCCGTTCCTGCATCGTCCCATTCCT
CGGTGGAGAAGGAGACGGAGCAAGAGCAGCAGCAACATCAGGGAGGAGGA
GGGGAGGGGGACAGAAAGGGAGGACGGGGGGGACAAGGACGACGACGATA
CCGAGAGAGGTTAGAGATTGAGAGGTGTGTGACAACAGAAGGTGTGACCC
CCTTGATGGTCGCGAGTGAGGGAGGGCACGTGGAAGTGGTGCGGGTGCTC
TTGACAAGGTTTTACTCAAGCCCTCCCTCCTCCGTTGGTCCCCTCCACCA
TTATGTCATCCTTATTCACTGCCCGTATCCTCGCCCTTACAATAGCCCCA
TCCCTCCTTCTTCTCATCACCGGCCCGCCATGCCTTGTCCCCCCTCCCGA
AGCCAGCATCATTCTTGCCTCATCCATAGCGAAAATCGGCGGGGACAACA
TAGCCTCTCTGCCTCGTCTTCGGGCTCGGCTCAAGGGAAAGGGCAGGTGC
TGCCCGCTTGTCTTTCCTCTCTTCCTTCCTCAGCTTCGACCGTTCCTACC
CCCCTTCCTCCCTTCCTACCTTCATCTCTTTCCCCTTTCTCCCTGGCTTG
TTTCGCGGGGAAATCAGAGGTTGTGACACTGGCGGGCCTCGTCTCAGACG
TCGTTTCTCGTTACCCCTCATCCCTTCACGCACCTGAAGACTTCACCGCA
TGGCCTTGGGTGCCTCCCCTTATGCACGCGGCTAAGACAGGGAACATGGC
GTTGGTGAACATCCTGCTCGAAAACGGGGTAGATCCCATGCGAGGGACTG
CTGCCCTGCCGGGGGGAGGGAGGAAGGGATGGCAGCAAGGGAACGAGACG
CCATTATGGGTGGCATGTAGAGAGGGGCATGTGATTGTCGTGGAAAGATT
ATTAGAGGAGGTGGGACAAAGCCCTCCCTCCGTTCCTGCATCGTCCCATT
CCTCGGTGGAGAAGGAGACGGAGCAAGAGCAGCAGCAACATCAGGGAGGA
GGAGGGGAGGGGGACAGAAAGGGAGGACGGGGGGGACAAGGACGACGACG
ATACCGAGAGAGGTTAGAGATTGAGAGGTGTGTGACAACAGAAGGTGTGA
CCCCCTTGATGGTCGCGAGTGAGGGAGGGCACGTGGAAGTGGTGCGGGTG
CTCTTGACAAGGTTTTACTCAAGCCCTCCCTCCTCCGTTGGTCCCCTCCA
CCATTATGTCATCCTTATTCACTGCCCGTATCCTCGCCCTTACAATAGCC
CCATCCCTCCTTCTTCTCATCACCGGCCCGCCATGCCTTGTCCCCCCTCC
CGAAGCCAGCATCATTCTTGCCTCATCCATAGCGAAAATCGGCGGGGACA
ACATAGCCTCTCTGCCTCGTCTTCGGGCTCGGCTCAAGGGAAAGGGCAGG
TGCTGCCCGCTTGTCTTTCCTCTCTTCCTTCCTCAGCTTCGACCGTTCCT
ACCCCCCTTCCTCCCTTCCTACCTTCATCTCTTTCCCCTTTCTCCCTGGC
TTGTTTCGCGGGGAAATCAGAGGTTGTGACACTGGCGGGCCTCGTCTCAG
ACGTCGTTTCTCGTTACCCCTCATCCCTTCACGCACCTGAAGACTTCACC
GCATGGCCTTGGGTGCCTCCCCTTATGCACGCGGCTAAGACAGGGAACAT
GGCGTTGGTGAACATCCTGCTCGAAAACGGGGTAGATCCCATGCGAGGGA
CTGCTGCCCTGCCGGGGGGAGGGAGGAAGGGATGGCAGCAAGGGAACGAG
ACGCCATTATGGGTGGCATGTAGAGAGGGGCATGTGATTGTCGTGGAAAG
ATTATTAGAGGAGGTGGGACAAAGCCCTCCCTCCGTTCCTGCATCGTCCC
ATTCCTCGGTGGAGAAGGAGACGGAGCAAGAGCAGCAGCAACATCAGGGA
GGAGGAGGGGAGGGGGACAGAAAGGGAGGACGGGGGGGACAAGGACGACG
ACGATACCGAGAGAGGTTAGAGATTGAGAGGTGTGTGACAACAGAAGGTG
TGACCCCCTTGATGGTCGCGAGTGAGGGAGGGCACGTGGAAGTGGTGCGG
GTGCTCTTGACAAGGTTTTACTCAAGCCCTCCCTCCTCCGTTGGTCCCCT
CCACCATTATGTCATCCTTATTCACTGCCCGTATCCTCGCCCTTACAATA
GCCCCATCCCTCCTTCTTCTCATCACCGGCCCGCCATGCCTTGTCCCCCC
TCCCGAAGCCAGCATCATTCTTGCCTCATCCATAGCGAAAATCGGCGGGG
ACAACATAG

Synonyms

Publications