jgi.p|Nanoce1779_2|603459, mRNA_8648 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|603459
Unique Name	mRNA_8648
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	981
Alignment location	scaffold_27:54858..56008 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	603545
Track	FilteredModels2
ProteinId	603459

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_27	supercontig	scaffold_27:54858..56008 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|603459	gene_8648	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|603459	mRNA_8648-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_8648	CDS_8648	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_27:54858..56008+
coding sequence from alignment at scaffold_27:54858..56008+

mRNA sequence

>mRNA_8648 ID=mRNA_8648|Name=jgi.p|Nanoce1779_2|603459|organism=Nannochloropsis oceanica|type=mRNA|length=981bp
CAGCAGCCACACGAGTGGCTATGGGTGTCAGACAACAAGCAGCAGCGTCG
CGGCCAAGCCCCTCACTTTCAACCTCCTTCCTCCTTGCAGTACTTGCCGT
TGCCTTCACTCCATCCAGTGCTGCCTTTCTCCTCCTGCCTTCATCCTCCT
CTCCCAGCTCCCTTTCCTGCACCTCATCGTTACTCATTAGCCGGCCACCA
TCGCGCTTCCAGTCTCTGTTTCGAAGACGGCCCTTTTCCCCCGTCTTCCG
CCCCCTCCAGCACAGCTTCTCCGGCTCCTCCTCTTCCTCCCCCTTCTCCC
TTCTCCACCTTCAAGCAAATAAGAACAACATCGACGAGGCTGAAAATGAG
GAGGAGGAGCAAGGCGAGCTTCGCAAACTTCTCACGAAGGACACGAAAGA
AAAACCCTTGCTCGTTTACCTTGCATTCGTGACGCTTTCCCTCTTGGCCC
TGGGCATCGGTACCTACAAAGCCGGAGGTCCTCTACTCGGATTAGGATTC
AGCGACGATCGGAATTTCTACTTTGACTCGGCACCGTCCTATGCCCTCCT
TCTCGTGTACCCGCCCCTCTTCCTCTTTTTCCCGGAGGCGCGGTCCCTCT
TGTTGAAGACTCTAGTTGTCTCGTTCTTGGCGACGTGTTTAATTTTCTTT
GTCCCCTTTCAGTCCTTGGGCTGGGAACCTACGAATGAAAATGTTTTGAT
CACTGCAGCTATCCCTATCCTGTCATATGTGACATTTTTCTCGTGGAGGG
CAACCCGGGTGTATCTGGAAATCGCCGAGGAGGACAGGCTGGAGAGGGAG
GAACGGGAGGGAGGGGAGGAGGACGTGATGAAATGAAGCCACAAATAAAT
GCAATTATAAATGAATAATGACAGTGTGTGGATTGCGCCTTTCTGTGTGT
CCTTGCCCTTGAAGGGATTGTCACGTCGTCATCCAAGGGGGCAATTACAA
ATTGAATTATTTTATTATGTTCTAATGTCTC

protein sequence of jgi.p|Nanoce1779_2|603459

>mRNA_8648-protein ID=mRNA_8648-protein|Name=jgi.p|Nanoce1779_2|603459|organism=Nannochloropsis oceanica|type=polypeptide|length=272bp
MGVRQQAAASRPSPSLSTSFLLAVLAVAFTPSSAAFLLLPSSSSPSSLSC
TSSLLISRPPSRFQSLFRRRPFSPVFRPLQHSFSGSSSSSPFSLLHLQAN
KNNIDEAENEEEEQGELRKLLTKDTKEKPLLVYLAFVTLSLLALGIGTYK
AGGPLLGLGFSDDRNFYFDSAPSYALLLVYPPLFLFFPEARSLLLKTLVV
SFLATCLIFFVPFQSLGWEPTNENVLITAAIPILSYVTFFSWRATRVYLE
IAEEDRLEREEREGGEEDVMK*

mRNA from alignment at scaffold_27:54858..56008+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_8648 ID=mRNA_8648|Name=jgi.p|Nanoce1779_2|603459|organism=Nannochloropsis oceanica|type=mRNA|length=1151bp|location=Sequence derived from alignment at scaffold_27:54858..56008+ (Nannochloropsis oceanica)
CAGCAGCCACACGAGTGGCTATGGGTGTCAGACAACAAGCAGCAGCGTCG
CGGCCAAGCCCCTCACTTTCAACCTCCTTCCTCCTTGCAGTACTTGCCGT
TGCCTTCACTCCATCCAGTGCTGCCTTTCTCCTCCTGCCTTCATCCTCCT
CTCCCAGCTCCCTTTCCTGCACCTCATCGTTACTCATTAGCCGGCCACCA
TCGCGCTTCCAGTCTCTGTTTCGAAGACGGCCCTTTTCCCCCGTCTTCCG
CCCCCTCCAGCACAGCTTCTCCGGCTCCTCCTCTTCCTCCCCCTTCTCCC
TTCTCCACCTTCAAGCAAATAAGAACAACATCGACGAGGCTGAAAATGAG
GAGGAGGAGCAAGGCGAGCTTCGCAAACTTCTCACGAAGGACACGAAAGA
AAAACCCTTGCTCGTTTACCTTGCATTCGTGACGCTTTCCCTCTTGGCCC
TGGGTACGTGATATAGTCATTTTATCCCCTCCATCCACCCCACCCTTCTT
CATTTCTCTTCATACCCCTTTCCATACAACGTGGCTGGAACTCTGCCCTT
TCTGGTATGCTTTTACCTTGTCCATTGATATTCACCCTCCCTTCCTCCCT
CCCTCCCTCTATCCACGATTCAGGCATCGGTACCTACAAAGCCGGAGGTC
CTCTACTCGGATTAGGATTCAGCGACGATCGGAATTTCTACTTTGACTCG
GCACCGTCCTATGCCCTCCTTCTCGTGTACCCGCCCCTCTTCCTCTTTTT
CCCGGAGGCGCGGTCCCTCTTGTTGAAGACTCTAGTTGTCTCGTTCTTGG
CGACGTGTTTAATTTTCTTTGTCCCCTTTCAGTCCTTGGGCTGGGAACCT
ACGAATGAAAATGTTTTGATCACTGCAGCTATCCCTATCCTGTCATATGT
GACATTTTTCTCGTGGAGGGCAACCCGGGTGTATCTGGAAATCGCCGAGG
AGGACAGGCTGGAGAGGGAGGAACGGGAGGGAGGGGAGGAGGACGTGATG
AAATGAAGCCACAAATAAATGCAATTATAAATGAATAATGACAGTGTGTG
GATTGCGCCTTTCTGTGTGTCCTTGCCCTTGAAGGGATTGTCACGTCGTC
ATCCAAGGGGGCAATTACAAATTGAATTATTTTATTATGTTCTAATGTCT
C

Coding sequence (CDS) from alignment at scaffold_27:54858..56008+

>mRNA_8648 ID=mRNA_8648|Name=jgi.p|Nanoce1779_2|603459|organism=Nannochloropsis oceanica|type=CDS|length=1632bp|location=Sequence derived from alignment at scaffold_27:54858..56008+ (Nannochloropsis oceanica)
ATGGGTGTCAGACAACAAGCAGCAGCGTCGCGGCCAAGCCCCTCACTTTC
AACCTCCTTCCTCCTTGCAGTACTTGCCGTTGCCTTCACTCCATCCAGTG
CTGCCTTTCTCCTCCTGCCTTCATCCTCCTCTCCCAGCTCCCTTTCCTGC
ACCTCATCGTTACTCATTAGCCGGCCACCATCGCGCTTCCAGTCTCTGTT
TCGAAGACGGCCCTTTTCCCCCGTCTTCCGCCCCCTCCAGCACAGCTTCT
CCGGCTCCTCCTCTTCCTCCCCCTTCTCCCTTCTCCACCTTCAAGCAAAT
AAGAACAACATCGACGAGGCTGAAAATGAGGAGGAGGAGCAAGGCGAGCT
TCGCAAACTTCTCACGAAGGACACGAAAGAAAAACCCTTGCTCGTTTACC
TTGCATTCGTGACGCTTTCCCTCTTGGCCCTGGGCATCGGTACCTACAAA
GCCGGAGGTCCTCTACTCGGATTAGGATTCAGCGACGATCGGAATTTCTA
CTTTGACTCGGCACCGTCCTATGCCCTCCTTCTCGTGTACCCGCCCCTCT
TCCTCTTTTTCCCGGAGGCGCGGTCCCTCTTGTTGAAGACTCTAGTTGTC
TCGTTCTTGGCGACGTGTTTAATTTTCTTTGTCCCCTTTCAGTCCTTGGG
CTGGGAACCTACGAATGAAAATGTTTTGATCACTGCAGCTATCCCTATCC
TGTCATATGTGACATTTTTCTCGTGGAGGGCAACCCGGGTGTATCTGGAA
ATCGCCGAGGAGGACAGGCTGGAGAGGGAGGAACGGGAGGGAGGGGAGGA
GGACGTGATGAAATGAATGGGTGTCAGACAACAAGCAGCAGCGTCGCGGC
CAAGCCCCTCACTTTCAACCTCCTTCCTCCTTGCAGTACTTGCCGTTGCC
TTCACTCCATCCAGTGCTGCCTTTCTCCTCCTGCCTTCATCCTCCTCTCC
CAGCTCCCTTTCCTGCACCTCATCGTTACTCATTAGCCGGCCACCATCGC
GCTTCCAGTCTCTGTTTCGAAGACGGCCCTTTTCCCCCGTCTTCCGCCCC
CTCCAGCACAGCTTCTCCGGCTCCTCCTCTTCCTCCCCCTTCTCCCTTCT
CCACCTTCAAGCAAATAAGAACAACATCGACGAGGCTGAAAATGAGGAGG
AGGAGCAAGGCGAGCTTCGCAAACTTCTCACGAAGGACACGAAAGAAAAA
CCCTTGCTCGTTTACCTTGCATTCGTGACGCTTTCCCTCTTGGCCCTGGG
CATCGGTACCTACAAAGCCGGAGGTCCTCTACTCGGATTAGGATTCAGCG
ACGATCGGAATTTCTACTTTGACTCGGCACCGTCCTATGCCCTCCTTCTC
GTGTACCCGCCCCTCTTCCTCTTTTTCCCGGAGGCGCGGTCCCTCTTGTT
GAAGACTCTAGTTGTCTCGTTCTTGGCGACGTGTTTAATTTTCTTTGTCC
CCTTTCAGTCCTTGGGCTGGGAACCTACGAATGAAAATGTTTTGATCACT
GCAGCTATCCCTATCCTGTCATATGTGACATTTTTCTCGTGGAGGGCAAC
CCGGGTGTATCTGGAAATCGCCGAGGAGGACAGGCTGGAGAGGGAGGAAC
GGGAGGGAGGGGAGGAGGACGTGATGAAATGA

Synonyms

Publications