jgi.p|Nanoce1779_2|514743, mRNA_8647 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|514743
Unique NamemRNA_8647
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length324
Alignment locationscaffold_27:52695..53018 -

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Properties
Property NameValue
TranscriptId514829
TrackFilteredModels2
ProteinId514743
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_27supercontigscaffold_27:52695..53018 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|514743gene_8647Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_8647CDS_8647Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|514743mRNA_8647-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_8647 ID=mRNA_8647|Name=jgi.p|Nanoce1779_2|514743|organism=Nannochloropsis oceanica|type=mRNA|length=324bp
GTCGATGATATTGACTCGGTCCTGGGGGGAGGGAATCAGAAGTACCGGAA
GAAGGGAGGAAGGAAGGGGGGGAAGGGAGGGTACTATGAGGAGGTGGCTG
CCAAGGGCCCCGCGGTTGTGGTTTTGGATGTGCCGACATTAACCATAGCG
CAACTGTCAGAGAAGATGGACGTGAGAGCGGGGGAGCTGATTAAGTACTT
GATGGTCTCCATGGGTGTGATGGCGACCATTACCCAATCGATTGATGCCG
AAACGGCCGTAACGGTTGCGGAGGCGTTTGGACGGGTGGTGCGTAGGGAG
GGGGAGGAGGAGGAGGAGGGGGAG
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protein sequence of jgi.p|Nanoce1779_2|514743

>mRNA_8647-protein ID=mRNA_8647-protein|Name=jgi.p|Nanoce1779_2|514743|organism=Nannochloropsis oceanica|type=polypeptide|length=108bp
VDDIDSVLGGGNQKYRKKGGRKGGKGGYYEEVAAKGPAVVVLDVPTLTIA
QLSEKMDVRAGELIKYLMVSMGVMATITQSIDAETAVTVAEAFGRVVRRE
GEEEEEGE
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mRNA from alignment at scaffold_27:52695..53018-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_8647 ID=mRNA_8647|Name=jgi.p|Nanoce1779_2|514743|organism=Nannochloropsis oceanica|type=mRNA|length=324bp|location=Sequence derived from alignment at scaffold_27:52695..53018- (Nannochloropsis oceanica)
GTCGATGATATTGACTCGGTCCTGGGGGGAGGGAATCAGAAGTACCGGAA
GAAGGGAGGAAGGAAGGGGGGGAAGGGAGGGTACTATGAGGAGGTGGCTG
CCAAGGGCCCCGCGGTTGTGGTTTTGGATGTGCCGACATTAACCATAGCG
CAACTGTCAGAGAAGATGGACGTGAGAGCGGGGGAGCTGATTAAGTACTT
GATGGTCTCCATGGGTGTGATGGCGACCATTACCCAATCGATTGATGCCG
AAACGGCCGTAACGGTTGCGGAGGCGTTTGGACGGGTGGTGCGTAGGGAG
GGGGAGGAGGAGGAGGAGGGGGAG
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Coding sequence (CDS) from alignment at scaffold_27:52695..53018-

>mRNA_8647 ID=mRNA_8647|Name=jgi.p|Nanoce1779_2|514743|organism=Nannochloropsis oceanica|type=CDS|length=324bp|location=Sequence derived from alignment at scaffold_27:52695..53018- (Nannochloropsis oceanica)
GTCGATGATATTGACTCGGTCCTGGGGGGAGGGAATCAGAAGTACCGGAA
GAAGGGAGGAAGGAAGGGGGGGAAGGGAGGGTACTATGAGGAGGTGGCTG
CCAAGGGCCCCGCGGTTGTGGTTTTGGATGTGCCGACATTAACCATAGCG
CAACTGTCAGAGAAGATGGACGTGAGAGCGGGGGAGCTGATTAAGTACTT
GATGGTCTCCATGGGTGTGATGGCGACCATTACCCAATCGATTGATGCCG
AAACGGCCGTAACGGTTGCGGAGGCGTTTGGACGGGTGGTGCGTAGGGAG
GGGGAGGAGGAGGAGGAGGGGGAG
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Synonyms
Publications