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Properties
| Property Name | Value |
|---|
| TranscriptId | 603542 |
| Track | FilteredModels2 |
| ProteinId | 603456 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_27 | supercontig | scaffold_27:50202..52751 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_8646 ID=mRNA_8646|Name=jgi.p|Nanoce1779_2|603456|organism=Nannochloropsis oceanica|type=mRNA|length=2144bp
GCGGAGGCGTTTGGACGGGTGGTGCGTAGGGAGGGGGAGGAGGAGGAGGA
GGGGGAGGACGGTGATGAAGGGGAAGAGGTGTTGAGTGTGTTGACGGAGG
GGTACGGGTGGGAGGAAGAGAAGGCGGAGAGCCTTATGCCGCGGGCGCCG
GTGGTGACGATTATGGGCCATGTCGACCACGGCAAGACGAGCTTGCTGGA
CGCGATTCGAGAGACGAGTGTGGTGTCGGGGGAGGCGGGAGGCATCACGC
AGCACATTGGGGCGTACCAGGTTAAGAGCAGCGACGACCGGATGATCACC
TTCATCGACACTCCAGGGCATGCGGCCTTCAGTGAGATGCGGGCCCGTGG
CGCCAACGTGACGGATCTGGTGGTGCTAGTGGTGGCCGCCGACGAAGGCG
TGAAGGAGCAAACTATCGACTCGATCCGTTGCGCTAAACAGGCCCATGTC
CCCATCCTTGTGGCAGTCAACAAGATTGACAAACCCGGGGCTGATTCTTC
CCGTGTCCGACAAGAGCTCATGAAGTACGAGGTGTTGATGGAGGAGTTCG
GTGGAGATGTCCTCTCTGCCGAAGTGTCGGCTAAGAAACGCCTCAACCTC
GATGGTCTCCTGGACAAAATTCTGCTCCAAGCAGAAATTTTGGATTTGAA
GGCCAATCCGGACCGAGCCGCCGTTGGTGCAGTGGTGGAGTCACGCATGG
AAAAGGGTCTTGGGCCTGTGACGACTGTTTTGGTACAGAAGGGAACGTTG
AGGGTAGGGGATTGCATTGTGGCGGGGAGTGCGTACGGGAAGGTGAGGAG
CTTGGCAGATGAGCGGGGGAGGAAGGTGGAGCAGGCCGGGCCGTCGGTGC
CGGCGGTTCTGAGTGGGTGGGACGGCGTTCCTTCTGCGGGCGACATGTTG
ATTGTGGTGGAGAACGAAAACCAGGCCCGGTCTCTGGCCGAGGCCCGGCG
GCGTCTGGAGCGGGAACGGACGGGGAGCGCGACTATGGGGAGCATGCAGG
CGAATGTCTTGTCGATCTTTGGCACGGAGGGCGTGAAGAAACGGGAGGAA
GTAACGGTTGTCATCAAGGCGGACGTGCAGGGGTCTGCGGAAGCGATCCA
CACGGCTGTGAGCGCCATTAAGGCCGAGGATGATCGAGCAGAGGTGGTGG
TGAAGGTTTTGTCGTCGGGTGTAGGAGACGTGACGCAGAATGACGTTGCG
TTGGCGGGCGTGAGCCATGGGACTGTCCTAGCATTCAATGTGGCGGCAGA
TATGAACGCGCAAGAGGAAGCGAGGAAGACAGGGGTGGAGATAGAGTATC
ACAATGTGATTTACGATATTTTGGATAAGCTTGAAGCGAAGGTCAAAGAG
ATTCTGAGCCCTACTCCTGACGGCGAATACGCGGGAACGGCTCGGGTGAA
ACTGATATTTGAAATTGGAAAGGTCGGGAAGGTGGCTGGGTGTGAAGTAA
CGGACGGGACTATTAAGAGAGGGGGCACCGTGAGGGTGTTGCGAGGCACG
GAGATCGTGTACAAGGGTCCGTTGAAAACGTTACGGAATGTCAAAAGCGA
CGTAACGGAGATGAGTGCGGGCCAGGAGTGTGGGATGAGCTTCAAGGACT
TTGAAGATTTCAGGCCTGATGACATTGTGGAGTGCTATGTCGTGGACAAG
AAGAAGTAAGACCTTCCTCCTTCAGTCCCTCCCTTCCCTCCCTCGTGAAG
GGTGGGTGGGGAGAGGAGGTTGGGATGAATCCAGGAGGTTGCTGAGAATG
GCCGACTTAATGATGATAATTTGGAGGTCTATGTGGTTGTTTTGAAGAAA
TAGGACTGAAGAGAGAGGGAGGGAGGAAGTCAACCATCGAAACGCTTGTA
GAGATGCTTCGGGGAAGGGAGAGGAGAAAGGGGAAGAGAGAGAGGGGGGG
GGGGTTAGTTTTCTTTACTTGCAAGCAGATTTTTTAAAAAAATAGTACGT
TTGTGTCTGTGGCTGTGTCTGTGTCCGTTTTTTGTGTACGTGGGCCTGTG
GGTCTGTGTGCTTTTGGTCGGAAAGCATTTCGAAGGAAGTTAGAAAGAAG
GGAAACAAACAAATAGAGGGAAACCCGAGAAAGACACATCGGTCGTGAGT
GTGAGAAAAGGAAGGAGGGAGGGAGGGAGGAAGTGAGGGAGGGA back to topprotein sequence of jgi.p|Nanoce1779_2|603456 >mRNA_8646-protein ID=mRNA_8646-protein|Name=jgi.p|Nanoce1779_2|603456|organism=Nannochloropsis oceanica|type=polypeptide|length=508bp
MPRAPVVTIMGHVDHGKTSLLDAIRETSVVSGEAGGITQHIGAYQVKSSD
DRMITFIDTPGHAAFSEMRARGANVTDLVVLVVAADEGVKEQTIDSIRCA
KQAHVPILVAVNKIDKPGADSSRVRQELMKYEVLMEEFGGDVLSAEVSAK
KRLNLDGLLDKILLQAEILDLKANPDRAAVGAVVESRMEKGLGPVTTVLV
QKGTLRVGDCIVAGSAYGKVRSLADERGRKVEQAGPSVPAVLSGWDGVPS
AGDMLIVVENENQARSLAEARRRLERERTGSATMGSMQANVLSIFGTEGV
KKREEVTVVIKADVQGSAEAIHTAVSAIKAEDDRAEVVVKVLSSGVGDVT
QNDVALAGVSHGTVLAFNVAADMNAQEEARKTGVEIEYHNVIYDILDKLE
AKVKEILSPTPDGEYAGTARVKLIFEIGKVGKVAGCEVTDGTIKRGGTVR
VLRGTEIVYKGPLKTLRNVKSDVTEMSAGQECGMSFKDFEDFRPDDIVEC
YVVDKKK* back to topmRNA from alignment at scaffold_27:50202..52751- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_8646 ID=mRNA_8646|Name=jgi.p|Nanoce1779_2|603456|organism=Nannochloropsis oceanica|type=mRNA|length=2550bp|location=Sequence derived from alignment at scaffold_27:50202..52751- (Nannochloropsis oceanica)
GCGGAGGCGTTTGGACGGGTGGTGCGTAGGGAGGGGGAGGAGGAGGAGGA
GGGGGAGGACGGTGATGAAGGGGAAGAGGTGTTGAGTGTGTTGACGGAGG
GGTACGGGTGGGAGGAAGAGAAGGCGGAGAGCCTTATGCCGCGGGCGCCG
GTGGTGACGATTATGGGCCATGTCGACCACGGCAAGACGAGCTTGCTGGA
CGCGATTCGAGAGACGAGTGTGGTGTCGGGGGAGGCGGGAGGCATCACGC
AGCACATTGGGGCGTACCAGGTAGGTAGATAGGAGAGAGAGGATGGGTGG
TGATGGCGTTGCTTTGTTTCCTTGCGTACACTGTAGTTGTGTGTTTGGTC
ATCTAGGTGGACGCCGCCCATTTTTCACAAATGATTTCTTATTAGGCCAT
TCCCTTTGCTCACCCCCCTCTCTTTACGCTTACACACCACATCTTCCTCT
TCGTCTTTTACTGTTGCTACAGGTTAAGAGCAGCGACGACCGGATGATCA
CCTTCATCGACACTCCAGGGCATGCGGCCTTCAGTGAGATGCGGGCCCGT
GGCGCCAACGTGACGGATCTGGTGGTGCTAGTGGTGGCCGCCGACGAAGG
CGTGAAGGAGCAAACTATCGACTCGATCCGTTGCGCTAAACAGGCCCATG
TCCCCATCCTTGTGGCAGTCAACAAGATTGACAAACCCGGGGCTGATTCT
TCCCGTGTCCGACAAGAGCTCATGAAGGTAACATGGTTGTTCTCCCTACC
CCCCTCCCTCCCTCCAAATATACAGACCACATGCCTCGCCTTTGCTTCGT
CCCTTCTTCCTCTTCCTCTTCAACCCTGAAACCACACTCATCAAAACCAA
TCAATCCATCCACGAACAAAAATTATTCATTTCTCCTTTCTCCCATTTCC
CCTCACTACTACCACTACCCACTCCGCACAGTACGAGGTGTTGATGGAGG
AGTTCGGTGGAGATGTCCTCTCTGCCGAAGTGTCGGCTAAGAAACGCCTC
AACCTCGATGGTCTCCTGGACAAAATTCTGCTCCAAGCAGAAATTTTGGA
TTTGAAGGCCAATCCGGACCGAGCCGCCGTTGGTGCAGTGGTGGAGTCAC
GCATGGAAAAGGGTCTTGGGCCTGTGACGACTGTTTTGGTACAGAAGGGA
ACGTTGAGGGTAGGGGATTGCATTGTGGCGGGGAGTGCGTACGGGAAGGT
GAGGAGCTTGGCAGATGAGCGGGGGAGGAAGGTGGAGCAGGCCGGGCCGT
CGGTGCCGGCGGTTCTGAGTGGGTGGGACGGCGTTCCTTCTGCGGGCGAC
ATGTTGATTGTGGTGGAGAACGAAAACCAGGCCCGGTCTCTGGCCGAGGC
CCGGCGGCGTCTGGAGCGGGAACGGACGGGGAGCGCGACTATGGGGAGCA
TGCAGGCGAATGTCTTGTCGATCTTTGGCACGGAGGGCGTGAAGAAACGG
GAGGAAGTAACGGTTGTCATCAAGGCGGACGTGCAGGGGTCTGCGGAAGC
GATCCACACGGCTGTGAGCGCCATTAAGGCCGAGGATGATCGAGCAGAGG
TGGTGGTGAAGGTTTTGTCGTCGGGTGTAGGAGACGTGACGCAGAATGAC
GTTGCGTTGGCGGGCGTGAGCCATGGGACTGTCCTAGCATTCAATGTGGC
GGCAGATATGAACGCGCAAGAGGAAGCGAGGAAGACAGGGGTGGAGATAG
AGTATCACAATGTGATTTACGATATTTTGGATAAGCTTGAAGCGAAGGTC
AAAGAGATTCTGAGCCCTACTCCTGACGGCGAATACGCGGGAACGGCTCG
GGTGAAACTGATATTTGAAATTGGAAAGGTCGGGAAGGTGGCTGGGTGTG
AAGTAACGGACGGGACTATTAAGAGAGGGGGCACCGTGAGGGTGTTGCGA
GGCACGGAGATCGTGTACAAGGGTCCGTTGAAAACGTTACGGAATGTCAA
AAGCGACGTAACGGAGATGAGTGCGGGCCAGGAGTGTGGGATGAGCTTCA
AGGACTTTGAAGATTTCAGGCCTGATGACATTGTGGAGTGCTATGTCGTG
GACAAGAAGAAGTAAGACCTTCCTCCTTCAGTCCCTCCCTTCCCTCCCTC
GTGAAGGGTGGGTGGGGAGAGGAGGTTGGGATGAATCCAGGAGGTTGCTG
AGAATGGCCGACTTAATGATGATAATTTGGAGGTCTATGTGGTTGTTTTG
AAGAAATAGGACTGAAGAGAGAGGGAGGGAGGAAGTCAACCATCGAAACG
CTTGTAGAGATGCTTCGGGGAAGGGAGAGGAGAAAGGGGAAGAGAGAGAG
GGGGGGGGGGTTAGTTTTCTTTACTTGCAAGCAGATTTTTTAAAAAAATA
GTACGTTTGTGTCTGTGGCTGTGTCTGTGTCCGTTTTTTGTGTACGTGGG
CCTGTGGGTCTGTGTGCTTTTGGTCGGAAAGCATTTCGAAGGAAGTTAGA
AAGAAGGGAAACAAACAAATAGAGGGAAACCCGAGAAAGACACATCGGTC
GTGAGTGTGAGAAAAGGAAGGAGGGAGGGAGGGAGGAAGTGAGGGAGGGA
back to topCoding sequence (CDS) from alignment at scaffold_27:50202..52751- >mRNA_8646 ID=mRNA_8646|Name=jgi.p|Nanoce1779_2|603456|organism=Nannochloropsis oceanica|type=CDS|length=4572bp|location=Sequence derived from alignment at scaffold_27:50202..52751- (Nannochloropsis oceanica)
TACGAGGTGTTGATGGAGGAGTTCGGTGGAGATGTCCTCTCTGCCGAAGT
GTCGGCTAAGAAACGCCTCAACCTCGATGGTCTCCTGGACAAAATTCTGC
TCCAAGCAGAAATTTTGGATTTGAAGGCCAATCCGGACCGAGCCGCCGTT
GGTGCAGTGGTGGAGTCACGCATGGAAAAGGGTCTTGGGCCTGTGACGAC
TGTTTTGGTACAGAAGGGAACGTTGAGGGTAGGGGATTGCATTGTGGCGG
GGAGTGCGTACGGGAAGGTGAGGAGCTTGGCAGATGAGCGGGGGAGGAAG
GTGGAGCAGGCCGGGCCGTCGGTGCCGGCGGTTCTGAGTGGGTGGGACGG
CGTTCCTTCTGCGGGCGACATGTTGATTGTGGTGGAGAACGAAAACCAGG
CCCGGTCTCTGGCCGAGGCCCGGCGGCGTCTGGAGCGGGAACGGACGGGG
AGCGCGACTATGGGGAGCATGCAGGCGAATGTCTTGTCGATCTTTGGCAC
GGAGGGCGTGAAGAAACGGGAGGAAGTAACGGTTGTCATCAAGGCGGACG
TGCAGGGGTCTGCGGAAGCGATCCACACGGCTGTGAGCGCCATTAAGGCC
GAGGATGATCGAGCAGAGGTGGTGGTGAAGGTTTTGTCGTCGGGTGTAGG
AGACGTGACGCAGAATGACGTTGCGTTGGCGGGCGTGAGCCATGGGACTG
TCCTAGCATTCAATGTGGCGGCAGATATGAACGCGCAAGAGGAAGCGAGG
AAGACAGGGGTGGAGATAGAGTATCACAATGTGATTTACGATATTTTGGA
TAAGCTTGAAGCGAAGGTCAAAGAGATTCTGAGCCCTACTCCTGACGGCG
AATACGCGGGAACGGCTCGGGTGAAACTGATATTTGAAATTGGAAAGGTC
GGGAAGGTGGCTGGGTGTGAAGTAACGGACGGGACTATTAAGAGAGGGGG
CACCGTGAGGGTGTTGCGAGGCACGGAGATCGTGTACAAGGGTCCGTTGA
AAACGTTACGGAATGTCAAAAGCGACGTAACGGAGATGAGTGCGGGCCAG
GAGTGTGGGATGAGCTTCAAGGACTTTGAAGATTTCAGGCCTGATGACAT
TGTGGAGTGCTATGTCGTGGACAAGAAGAAGTAAGTTAAGAGCAGCGACG
ACCGGATGATCACCTTCATCGACACTCCAGGGCATGCGGCCTTCAGTGAG
ATGCGGGCCCGTGGCGCCAACGTGACGGATCTGGTGGTGCTAGTGGTGGC
CGCCGACGAAGGCGTGAAGGAGCAAACTATCGACTCGATCCGTTGCGCTA
AACAGGCCCATGTCCCCATCCTTGTGGCAGTCAACAAGATTGACAAACCC
GGGGCTGATTCTTCCCGTGTCCGACAAGAGCTCATGAAGATGCCGCGGGC
GCCGGTGGTGACGATTATGGGCCATGTCGACCACGGCAAGACGAGCTTGC
TGGACGCGATTCGAGAGACGAGTGTGGTGTCGGGGGAGGCGGGAGGCATC
ACGCAGCACATTGGGGCGTACCAGTACGAGGTGTTGATGGAGGAGTTCGG
TGGAGATGTCCTCTCTGCCGAAGTGTCGGCTAAGAAACGCCTCAACCTCG
ATGGTCTCCTGGACAAAATTCTGCTCCAAGCAGAAATTTTGGATTTGAAG
GCCAATCCGGACCGAGCCGCCGTTGGTGCAGTGGTGGAGTCACGCATGGA
AAAGGGTCTTGGGCCTGTGACGACTGTTTTGGTACAGAAGGGAACGTTGA
GGGTAGGGGATTGCATTGTGGCGGGGAGTGCGTACGGGAAGGTGAGGAGC
TTGGCAGATGAGCGGGGGAGGAAGGTGGAGCAGGCCGGGCCGTCGGTGCC
GGCGGTTCTGAGTGGGTGGGACGGCGTTCCTTCTGCGGGCGACATGTTGA
TTGTGGTGGAGAACGAAAACCAGGCCCGGTCTCTGGCCGAGGCCCGGCGG
CGTCTGGAGCGGGAACGGACGGGGAGCGCGACTATGGGGAGCATGCAGGC
GAATGTCTTGTCGATCTTTGGCACGGAGGGCGTGAAGAAACGGGAGGAAG
TAACGGTTGTCATCAAGGCGGACGTGCAGGGGTCTGCGGAAGCGATCCAC
ACGGCTGTGAGCGCCATTAAGGCCGAGGATGATCGAGCAGAGGTGGTGGT
GAAGGTTTTGTCGTCGGGTGTAGGAGACGTGACGCAGAATGACGTTGCGT
TGGCGGGCGTGAGCCATGGGACTGTCCTAGCATTCAATGTGGCGGCAGAT
ATGAACGCGCAAGAGGAAGCGAGGAAGACAGGGGTGGAGATAGAGTATCA
CAATGTGATTTACGATATTTTGGATAAGCTTGAAGCGAAGGTCAAAGAGA
TTCTGAGCCCTACTCCTGACGGCGAATACGCGGGAACGGCTCGGGTGAAA
CTGATATTTGAAATTGGAAAGGTCGGGAAGGTGGCTGGGTGTGAAGTAAC
GGACGGGACTATTAAGAGAGGGGGCACCGTGAGGGTGTTGCGAGGCACGG
AGATCGTGTACAAGGGTCCGTTGAAAACGTTACGGAATGTCAAAAGCGAC
GTAACGGAGATGAGTGCGGGCCAGGAGTGTGGGATGAGCTTCAAGGACTT
TGAAGATTTCAGGCCTGATGACATTGTGGAGTGCTATGTCGTGGACAAGA
AGAAGTAAGTTAAGAGCAGCGACGACCGGATGATCACCTTCATCGACACT
CCAGGGCATGCGGCCTTCAGTGAGATGCGGGCCCGTGGCGCCAACGTGAC
GGATCTGGTGGTGCTAGTGGTGGCCGCCGACGAAGGCGTGAAGGAGCAAA
CTATCGACTCGATCCGTTGCGCTAAACAGGCCCATGTCCCCATCCTTGTG
GCAGTCAACAAGATTGACAAACCCGGGGCTGATTCTTCCCGTGTCCGACA
AGAGCTCATGAAGATGCCGCGGGCGCCGGTGGTGACGATTATGGGCCATG
TCGACCACGGCAAGACGAGCTTGCTGGACGCGATTCGAGAGACGAGTGTG
GTGTCGGGGGAGGCGGGAGGCATCACGCAGCACATTGGGGCGTACCAGTA
CGAGGTGTTGATGGAGGAGTTCGGTGGAGATGTCCTCTCTGCCGAAGTGT
CGGCTAAGAAACGCCTCAACCTCGATGGTCTCCTGGACAAAATTCTGCTC
CAAGCAGAAATTTTGGATTTGAAGGCCAATCCGGACCGAGCCGCCGTTGG
TGCAGTGGTGGAGTCACGCATGGAAAAGGGTCTTGGGCCTGTGACGACTG
TTTTGGTACAGAAGGGAACGTTGAGGGTAGGGGATTGCATTGTGGCGGGG
AGTGCGTACGGGAAGGTGAGGAGCTTGGCAGATGAGCGGGGGAGGAAGGT
GGAGCAGGCCGGGCCGTCGGTGCCGGCGGTTCTGAGTGGGTGGGACGGCG
TTCCTTCTGCGGGCGACATGTTGATTGTGGTGGAGAACGAAAACCAGGCC
CGGTCTCTGGCCGAGGCCCGGCGGCGTCTGGAGCGGGAACGGACGGGGAG
CGCGACTATGGGGAGCATGCAGGCGAATGTCTTGTCGATCTTTGGCACGG
AGGGCGTGAAGAAACGGGAGGAAGTAACGGTTGTCATCAAGGCGGACGTG
CAGGGGTCTGCGGAAGCGATCCACACGGCTGTGAGCGCCATTAAGGCCGA
GGATGATCGAGCAGAGGTGGTGGTGAAGGTTTTGTCGTCGGGTGTAGGAG
ACGTGACGCAGAATGACGTTGCGTTGGCGGGCGTGAGCCATGGGACTGTC
CTAGCATTCAATGTGGCGGCAGATATGAACGCGCAAGAGGAAGCGAGGAA
GACAGGGGTGGAGATAGAGTATCACAATGTGATTTACGATATTTTGGATA
AGCTTGAAGCGAAGGTCAAAGAGATTCTGAGCCCTACTCCTGACGGCGAA
TACGCGGGAACGGCTCGGGTGAAACTGATATTTGAAATTGGAAAGGTCGG
GAAGGTGGCTGGGTGTGAAGTAACGGACGGGACTATTAAGAGAGGGGGCA
CCGTGAGGGTGTTGCGAGGCACGGAGATCGTGTACAAGGGTCCGTTGAAA
ACGTTACGGAATGTCAAAAGCGACGTAACGGAGATGAGTGCGGGCCAGGA
GTGTGGGATGAGCTTCAAGGACTTTGAAGATTTCAGGCCTGATGACATTG
TGGAGTGCTATGTCGTGGACAAGAAGAAGTAAGTTAAGAGCAGCGACGAC
CGGATGATCACCTTCATCGACACTCCAGGGCATGCGGCCTTCAGTGAGAT
GCGGGCCCGTGGCGCCAACGTGACGGATCTGGTGGTGCTAGTGGTGGCCG
CCGACGAAGGCGTGAAGGAGCAAACTATCGACTCGATCCGTTGCGCTAAA
CAGGCCCATGTCCCCATCCTTGTGGCAGTCAACAAGATTGACAAACCCGG
GGCTGATTCTTCCCGTGTCCGACAAGAGCTCATGAAGATGCCGCGGGCGC
CGGTGGTGACGATTATGGGCCATGTCGACCACGGCAAGACGAGCTTGCTG
GACGCGATTCGAGAGACGAGTGTGGTGTCGGGGGAGGCGGGAGGCATCAC
GCAGCACATTGGGGCGTACCAG back to top
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