jgi.p|Nanoce1779_2|603447, mRNA_8644 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|603447
Unique NamemRNA_8644
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length445
Alignment locationscaffold_27:46165..46609 -

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Properties
Property NameValue
TranscriptId603533
TrackFilteredModels2
ProteinId603447
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_27supercontigscaffold_27:46165..46609 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|603447gene_8644Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|603447mRNA_8644-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_8644CDS_8644Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_8644 ID=mRNA_8644|Name=jgi.p|Nanoce1779_2|603447|organism=Nannochloropsis oceanica|type=mRNA|length=445bp
CTATAAACTATGTGCATGCCTGCGTATCGGCCTTGGGACTTCAGCCTGGA
TGCTTCTTCCAGCCTGTCTGTGGCTAGGCCAGGCGGTCGTCACCTCCTGC
CCCCCACGGAACAAACCACGCAGTGGAAAGCCATGCATACATATGCCACA
CCTTTATCGCACACTTTGCTTGTTGCCCATCCTTGACGTATACCCCTACG
GTTCTCTCCGCGTTGTTTCCTACTCCCTCATTTTGAGAGGGCCCTATGTG
GGTTCATTGAGAGGGCGGGAATGAGTGGGCAAGACAGACCTATCCCTCCC
TTCCGAACCACCACCCGTTGCCTCTTGTTGCCGCACAGAGAGGCTTGCGC
TCACGCAAATATAAAATCATGCCTTTCTTGTTTTAATTATCCCTCGCGAT
CTCATAACCGTCTTTCATACCCTCCTTCCCTCCCTCCCTCCTTCC
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protein sequence of jgi.p|Nanoce1779_2|603447

>mRNA_8644-protein ID=mRNA_8644-protein|Name=jgi.p|Nanoce1779_2|603447|organism=Nannochloropsis oceanica|type=polypeptide|length=75bp
MLLPACLWLGQAVVTSCPPRNKPRSGKPCIHMPHLYRTLCLLPILDVYPY
GSLRVVSYSLILRGPYVGSLRGRE*
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mRNA from alignment at scaffold_27:46165..46609-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_8644 ID=mRNA_8644|Name=jgi.p|Nanoce1779_2|603447|organism=Nannochloropsis oceanica|type=mRNA|length=445bp|location=Sequence derived from alignment at scaffold_27:46165..46609- (Nannochloropsis oceanica)
CTATAAACTATGTGCATGCCTGCGTATCGGCCTTGGGACTTCAGCCTGGA
TGCTTCTTCCAGCCTGTCTGTGGCTAGGCCAGGCGGTCGTCACCTCCTGC
CCCCCACGGAACAAACCACGCAGTGGAAAGCCATGCATACATATGCCACA
CCTTTATCGCACACTTTGCTTGTTGCCCATCCTTGACGTATACCCCTACG
GTTCTCTCCGCGTTGTTTCCTACTCCCTCATTTTGAGAGGGCCCTATGTG
GGTTCATTGAGAGGGCGGGAATGAGTGGGCAAGACAGACCTATCCCTCCC
TTCCGAACCACCACCCGTTGCCTCTTGTTGCCGCACAGAGAGGCTTGCGC
TCACGCAAATATAAAATCATGCCTTTCTTGTTTTAATTATCCCTCGCGAT
CTCATAACCGTCTTTCATACCCTCCTTCCCTCCCTCCCTCCTTCC
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Coding sequence (CDS) from alignment at scaffold_27:46165..46609-

>mRNA_8644 ID=mRNA_8644|Name=jgi.p|Nanoce1779_2|603447|organism=Nannochloropsis oceanica|type=CDS|length=225bp|location=Sequence derived from alignment at scaffold_27:46165..46609- (Nannochloropsis oceanica)
ATGCTTCTTCCAGCCTGTCTGTGGCTAGGCCAGGCGGTCGTCACCTCCTG
CCCCCCACGGAACAAACCACGCAGTGGAAAGCCATGCATACATATGCCAC
ACCTTTATCGCACACTTTGCTTGTTGCCCATCCTTGACGTATACCCCTAC
GGTTCTCTCCGCGTTGTTTCCTACTCCCTCATTTTGAGAGGGCCCTATGT
GGGTTCATTGAGAGGGCGGGAATGA
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Synonyms
Publications