jgi.p|Nanoce1779_2|212364, mRNA_8642 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|212364
Unique Name	mRNA_8642
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2188
Alignment location	scaffold_27:39973..42507 -

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Properties


Property Name	Value
TranscriptId	212450
Track	FilteredModels2
ProteinId	212364

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_27	supercontig	scaffold_27:39973..42507 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|212364	gene_8642	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|212364	mRNA_8642-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_8642	CDS_8642	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_27:39973..42507-
coding sequence from alignment at scaffold_27:39973..42507-

mRNA sequence

>mRNA_8642 ID=mRNA_8642|Name=jgi.p|Nanoce1779_2|212364|organism=Nannochloropsis oceanica|type=mRNA|length=2188bp
CCCTCCCTCCTCCTCCTCCGCCACGAAACTGCCTAATGGTGGGAAAATCG
TCTCGGTCCCCACCCCGTCCTCCTTCCCACCCTCCCTCCTCCTCCTGCGC
TGCCCAACGGAAAAGTCGTTGCAGCAGGAAGAGCGAGTGGCCCATGCATG
CGGCTTCTCGACAGGGGTGGCGTCACCTGCCATGCTAAAGGAGATATATT
TGTTGCAAAAACTACACCGAGACGCCGCAGGAGGAGGTGGAGGGAGGGTT
GGAGGAGGAGGAGGGGGAGGGAGGGTCAGAGGGTGTCCATATTTATTGAC
GCCGCTGGCGCTGGTTAAGGGGAGGAGGAAGAGGGTGAGGAGGAGAGAGG
GTGAGGAGAATGGGAGGACTGGGAAGAGGGAGGAAGAAGAGGACGAGGAA
GAAAAGGAAGAGGGCGGGAAGGGAGGAGGAGGAGGAGGAAGCGGAGGAGG
AGCGTCGCCACTGTTGAACTTTGACGATCGCTCTGCTCCCCCTCCTTCCC
GCCCTCCCTCGTTCCTTTCTCTCGGTTTGTCAGGCGCTACCTCTCCTCCT
TCCTCCACGTACCGCCACCTTGCCCCTTCCTCCCTCCCTTCCTCCTTCTC
TTCCTCCCAGCACGACGAGAAAAAGCACAACAGCGATGCGGAGGGAGGGA
GGAACGGAAGGAAAGAGGACGAAATCGCCTCTTCCCCATACCTCTTCCTC
GCTTTCTCCCCTCCCCTCTTCACTCTTGCTAGTCTTTTGAAGCACACCAC
TCTGTCGTCCCGAGGGCCCGCCCTCTCTCCCGCCCTCCTTCGTGCCCTCA
CCCACTCCCTTCTGAGTGCTGTGGAGTGGTGTCATTCTAGGGGCGTGGTG
ATCAAAAACGTGGACCCGAATTTGATATTCCTTGATGAGGAGGGAAGGAT
CCGACTAGGGTGTTTCGAAGAGGCGGTGGCTTTGCCGGCGGGAGGAGGAG
GAGGAGGCGGAGTTGGGAAGGAAGGAGGGAGGAAGGAGAAAGAGTTGAAA
GGGAAGCAGCTGGAGGGTGTGAAGCGGGCGATGGAGGAGATGTGGGATGA
GGGAAAGCGACGGAAGAAGAATTTGGTGGCGCCTGAGGTGGTATTGGGAG
GGGATGCGAGCCCTATGAGTGATTGTTGGTCGATGGGTTGCCTCTTATCT
CTCTTGTTGTTGTCCCGACCGTTATTCGATGCCCGGAGTAACGGTCAGTT
GATGGAGCATGTCTACCGTGTGGTCGGGTCGTATGACGGGGTGTGGAAGC
AGGGGACGAGCCTCCCGTACTACCACCTGTGTAAGCCACAGCGGGCGAGC
GGATATGCGCCGCGGGTAGAGAAGTACGTGCGGGGTCTGGTGGAGAAGGC
GAGCAAGGAGGGGAGGGAGGGGTGGAGGGAGGATGGGGCAGGGGTGGTGG
TGGGTTTGGTAAGACTCGATCCGACGAAGAGAGCAACGGCCAGGGAGTGC
TTGGAGAAGGCGCCGTTTCTGGCCGTTTACAGGGAGGGGGGGAGAGAGGG
AGGGAGGGAGAGAGGGCATATTCACGGGGGGAATGGAGAAAGGGAGAGGG
GGAAGGAGAGGGAAGAAGCGAGGGAGGGATGGGAGGGGGTAGCGGCCATG
GTCCCTCCCCTGGTTCCTGGAATGGCGGCAAAGCCGTTTGGAGGAGGGAG
GGAGGAAGGGAGGGAGGAAGGGAGGGAGGGAGGGTTCACCCAGTATGAGT
GTGTGGGCAGGGAATGGATGGAGGGAGGGAGGGATTCAGAGGAGTTGAAG
CAATTGTTTGCCTTCTCGACGGGGCCTGGTTCTTCGTCTTGCACCCCATC
CTCCCTCCCACCCTCCTCCTCATCCTCCTCCTCCTCCCAACCACCACCAC
CATCACTCTTCTCAGCAGCAGCAGCAGCAGCAGGATGACGTGGACATGGA
TATCTCAGACAATGAAGAGGAGGAGAAGAGGGCCGGACCCAAGCAGCAGC
AGCAGCACAGAGGGAGGGAAGGAGGGGAGCAACGGCCTTTATCTTCCCCC
CCCCCCTCGTCCTCGTCCTCTCGCATCATAATCCGTGAAAATGGGGAGAG
AAGAACGAGCGCAGGGCAAGGGAGGGAAGGAGCGAGGGAGGGAGGACGAG
GGAGGGAAGGAGGGGGGCGATCTCGGTCGCGGTCGAGGGGAAGAGAGAGG
GACAGGGAGAGGGAAAAAGGAAGTGGGGGAGGAGGACG

protein sequence of jgi.p|Nanoce1779_2|212364

>mRNA_8642-protein ID=mRNA_8642-protein|Name=jgi.p|Nanoce1779_2|212364|organism=Nannochloropsis oceanica|type=polypeptide|length=569bp
MLKEIYLLQKLHRDAAGGGGGRVGGGGGGGRVRGCPYLLTPLALVKGRRK
RVRRREGEENGRTGKREEEEDEEEKEEGGKGGGGGGSGGGASPLLNFDDR
SAPPPSRPPSFLSLGLSGATSPPSSTYRHLAPSSLPSSFSSSQHDEKKHN
SDAEGGRNGRKEDEIASSPYLFLAFSPPLFTLASLLKHTTLSSRGPALSP
ALLRALTHSLLSAVEWCHSRGVVIKNVDPNLIFLDEEGRIRLGCFEEAVA
LPAGGGGGGGVGKEGGRKEKELKGKQLEGVKRAMEEMWDEGKRRKKNLVA
PEVVLGGDASPMSDCWSMGCLLSLLLLSRPLFDARSNGQLMEHVYRVVGS
YDGVWKQGTSLPYYHLCKPQRASGYAPRVEKYVRGLVEKASKEGREGWRE
DGAGVVVGLVRLDPTKRATARECLEKAPFLAVYREGGREGGRERGHIHGG
NGERERGKEREEAREGWEGVAAMVPPLVPGMAAKPFGGGREEGREEGREG
GFTQYECVGREWMEGGRDSEELKQLFAFSTGPGSSSCTPSSLPPSSSSSS
SSQPPPPSLFSAAAAAAG*

mRNA from alignment at scaffold_27:39973..42507-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_8642 ID=mRNA_8642|Name=jgi.p|Nanoce1779_2|212364|organism=Nannochloropsis oceanica|type=mRNA|length=2535bp|location=Sequence derived from alignment at scaffold_27:39973..42507- (Nannochloropsis oceanica)
CCCTCCCTCCTCCTCCTCCGCCACGAAACTGCCTAATGGTGGGAAAATCG
TCTCGGTCCCCACCCCGTCCTCCTTCCCACCCTCCCTCCTCCTCCTGCGC
TGCCCAACGGAAAAGTCGTTGCAGCAGGAAGAGCGAGTGGCCCATGCATG
CGGCTTCTCGACAGGGGTGGCGTCACCTGCCATGCTAAAGGAGATATATT
TGTTGCAAAAACTACACCGAGACGCCGCAGGAGGAGGTGGAGGGAGGGTT
GGAGGAGGAGGAGGGGGAGGGAGGGTCAGAGGGTGTCCATATTTATTGAC
GCCGCTGGCGCTGGTTAAGGGGAGGAGGAAGAGGGTGAGGAGGAGAGAGG
GTGAGGAGAATGGGAGGACTGGGAAGAGGGAGGAAGAAGAGGACGAGGAA
GAAAAGGAAGAGGGCGGGAAGGGAGGAGGAGGAGGAGGAAGCGGAGGAGG
AGCGTCGCCACTGTTGAACTTTGACGATCGCTCTGCTCCCCCTCCTTCCC
GCCCTCCCTCGTTCCTTTCTCTCGGTTTGTCAGGCGCTACCTCTCCTCCT
TCCTCCACGTACCGCCACCTTGCCCCTTCCTCCCTCCCTTCCTCCTTCTC
TTCCTCCCAGCACGACGAGAAAAAGCACAACAGCGATGCGGAGGGAGGGA
GGAACGGAAGGAAAGAGGACGAAATCGCCTCTTCCCCATACCTCTTCCTC
GCTTTCTCCCCTCCCCTCTTCACTCTTGCTAGTCTTTTGAAGCACACCAC
TCTGTCGTCCCGAGGGCCCGCCCTCTCTCCCGCCCTCCTTCGTGCCCTCA
CCCACTCCCTTCTGAGTGCTGTGGAGTGGTGTCATTCTAGGGGCGTGGTG
ATCAAAAACGTGGACCCGAATTTGATATTCCTTGATGAGGAGGGAAGGAT
CCGACTAGGGTGTTTCGAAGAGGCGGTGGCTTTGCCGGCGGGAGGAGGAG
GAGGAGGCGGAGTTGGGAAGGAAGGAGGGAGGAAGGAGAAAGAGTTGAAA
GGGAAGCAGCTGGAGGGTGTGAAGCGGGCGATGGAGGAGATGTGGGATGA
GGGAAAGCGACGGAAGAAGAATTTGGTGGCGCCTGAGGTGGTATTGGGAG
GGGATGCGAGCCCTATGAGTGATTGTTGGTCGATGGGTTGCCTCTTATCT
CTCTTGTTGTTGTCCCGACCGTTATTCGATGCCCGGAGTAACGGTCAGTT
GATGGAGCATGTCTACCGTGTGGTCGGGTCGTATGACGGGGTGTGGAAGC
AGGGGACGAGCCTCCCGTACTACCACCTGTGTAAGCCACAGCGGGCGAGC
GGATATGCGCCGCGGGTAGAGAAGTACGTGCGGGGTCTGGTGGAGAAGGC
GAGCAAGGAGGGGAGGGAGGGGTGGAGGGAGGATGGGGCAGGGGTGGTGG
TGGGTTTGGTAAGACTCGATCCGACGAAGAGAGCAACGGCCAGGGAGTGC
TTGGAGAAGGCGCCGTTTCTGGCCGTTTACAGGGAGGGGGGGAGAGAGGG
AGGGAGGGAGAGAGGGCATATTCACGGGGGGAATGGAGAAAGGGAGAGGG
GGAAGGAGAGGGAAGAAGCGAGGGAGGGATGGGAGGGGGTAGCGGCCATG
GTCCCTCCCCTGGTTCCTGGAATGGCGGCAAAGCCGTTTGGAGGAGGGAG
GGAGGAAGGGAGGGAGGAAGGGAGGGAGGGAGGGTTCACCCAGTATGAGT
GTGTGGGCAGGGAATGGATGGAGGGAGGGAGGGATTCAGAGGAGTTGAAG
CAATTGTTTGCCTTCTCGACGGGGCCTGGTTCTTCGTCTTGCACCCCATC
CTCCCTCCCACCCTCCTCCTCATCCTCCTCCTCCTCCACTTTATATGCTG
GCGCCACGGGGGGAGACAGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGG
GAGGGAGGGAGGGTAGACAAGCCCTACTCATCCACCTCCTCGGGGATGGG
CACACTTGGGTGGGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAG
GAGGAGGAGGAGGAGGAGGAGGGGGCCGCGGCATTCATCACTCCGTGGCT
CCCACCACTTCTTCTCCGTCTTCTGCCGGACGAAATTCTCTTGGTTTCCC
CTCCTCCTCACTCTCCCCCTCCTCCTCCTCCATCCATGCGCGTCACGGCG
CTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCCAACCACCACCACCAT
CACTCTTCTCAGCAGCAGCAGCAGCAGCAGGATGACGTGGACATGGATAT
CTCAGACAATGAAGAGGAGGAGAAGAGGGCCGGACCCAAGCAGCAGCAGC
AGCACAGAGGGAGGGAAGGAGGGGAGCAACGGCCTTTATCTTCCCCCCCC
CCCTCGTCCTCGTCCTCTCGCATCATAATCCGTGAAAATGGGGAGAGAAG
AACGAGCGCAGGGCAAGGGAGGGAAGGAGCGAGGGAGGGAGGACGAGGGA
GGGAAGGAGGGGGGCGATCTCGGTCGCGGTCGAGGGGAAGAGAGAGGGAC
AGGGAGAGGGAAAAAGGAAGTGGGGGAGGAGGACG

Coding sequence (CDS) from alignment at scaffold_27:39973..42507-

>mRNA_8642 ID=mRNA_8642|Name=jgi.p|Nanoce1779_2|212364|organism=Nannochloropsis oceanica|type=CDS|length=3414bp|location=Sequence derived from alignment at scaffold_27:39973..42507- (Nannochloropsis oceanica)
TCCTCCTCCTCCTCCCAACCACCACCACCATCACTCTTCTCAGCAGCAGC
AGCAGCAGCAGGATGAATGCTAAAGGAGATATATTTGTTGCAAAAACTAC
ACCGAGACGCCGCAGGAGGAGGTGGAGGGAGGGTTGGAGGAGGAGGAGGG
GGAGGGAGGGTCAGAGGGTGTCCATATTTATTGACGCCGCTGGCGCTGGT
TAAGGGGAGGAGGAAGAGGGTGAGGAGGAGAGAGGGTGAGGAGAATGGGA
GGACTGGGAAGAGGGAGGAAGAAGAGGACGAGGAAGAAAAGGAAGAGGGC
GGGAAGGGAGGAGGAGGAGGAGGAAGCGGAGGAGGAGCGTCGCCACTGTT
GAACTTTGACGATCGCTCTGCTCCCCCTCCTTCCCGCCCTCCCTCGTTCC
TTTCTCTCGGTTTGTCAGGCGCTACCTCTCCTCCTTCCTCCACGTACCGC
CACCTTGCCCCTTCCTCCCTCCCTTCCTCCTTCTCTTCCTCCCAGCACGA
CGAGAAAAAGCACAACAGCGATGCGGAGGGAGGGAGGAACGGAAGGAAAG
AGGACGAAATCGCCTCTTCCCCATACCTCTTCCTCGCTTTCTCCCCTCCC
CTCTTCACTCTTGCTAGTCTTTTGAAGCACACCACTCTGTCGTCCCGAGG
GCCCGCCCTCTCTCCCGCCCTCCTTCGTGCCCTCACCCACTCCCTTCTGA
GTGCTGTGGAGTGGTGTCATTCTAGGGGCGTGGTGATCAAAAACGTGGAC
CCGAATTTGATATTCCTTGATGAGGAGGGAAGGATCCGACTAGGGTGTTT
CGAAGAGGCGGTGGCTTTGCCGGCGGGAGGAGGAGGAGGAGGCGGAGTTG
GGAAGGAAGGAGGGAGGAAGGAGAAAGAGTTGAAAGGGAAGCAGCTGGAG
GGTGTGAAGCGGGCGATGGAGGAGATGTGGGATGAGGGAAAGCGACGGAA
GAAGAATTTGGTGGCGCCTGAGGTGGTATTGGGAGGGGATGCGAGCCCTA
TGAGTGATTGTTGGTCGATGGGTTGCCTCTTATCTCTCTTGTTGTTGTCC
CGACCGTTATTCGATGCCCGGAGTAACGGTCAGTTGATGGAGCATGTCTA
CCGTGTGGTCGGGTCGTATGACGGGGTGTGGAAGCAGGGGACGAGCCTCC
CGTACTACCACCTGTGTAAGCCACAGCGGGCGAGCGGATATGCGCCGCGG
GTAGAGAAGTACGTGCGGGGTCTGGTGGAGAAGGCGAGCAAGGAGGGGAG
GGAGGGGTGGAGGGAGGATGGGGCAGGGGTGGTGGTGGGTTTGGTAAGAC
TCGATCCGACGAAGAGAGCAACGGCCAGGGAGTGCTTGGAGAAGGCGCCG
TTTCTGGCCGTTTACAGGGAGGGGGGGAGAGAGGGAGGGAGGGAGAGAGG
GCATATTCACGGGGGGAATGGAGAAAGGGAGAGGGGGAAGGAGAGGGAAG
AAGCGAGGGAGGGATGGGAGGGGGTAGCGGCCATGGTCCCTCCCCTGGTT
CCTGGAATGGCGGCAAAGCCGTTTGGAGGAGGGAGGGAGGAAGGGAGGGA
GGAAGGGAGGGAGGGAGGGTTCACCCAGTATGAGTGTGTGGGCAGGGAAT
GGATGGAGGGAGGGAGGGATTCAGAGGAGTTGAAGCAATTGTTTGCCTTC
TCGACGGGGCCTGGTTCTTCGTCTTGCACCCCATCCTCCCTCCCACCCTC
CTCCTCATCCTCCTCCTCCTCCCAACCACCACCACCATCACTCTTCTCAG
CAGCAGCAGCAGCAGCAGGATGAATGCTAAAGGAGATATATTTGTTGCAA
AAACTACACCGAGACGCCGCAGGAGGAGGTGGAGGGAGGGTTGGAGGAGG
AGGAGGGGGAGGGAGGGTCAGAGGGTGTCCATATTTATTGACGCCGCTGG
CGCTGGTTAAGGGGAGGAGGAAGAGGGTGAGGAGGAGAGAGGGTGAGGAG
AATGGGAGGACTGGGAAGAGGGAGGAAGAAGAGGACGAGGAAGAAAAGGA
AGAGGGCGGGAAGGGAGGAGGAGGAGGAGGAAGCGGAGGAGGAGCGTCGC
CACTGTTGAACTTTGACGATCGCTCTGCTCCCCCTCCTTCCCGCCCTCCC
TCGTTCCTTTCTCTCGGTTTGTCAGGCGCTACCTCTCCTCCTTCCTCCAC
GTACCGCCACCTTGCCCCTTCCTCCCTCCCTTCCTCCTTCTCTTCCTCCC
AGCACGACGAGAAAAAGCACAACAGCGATGCGGAGGGAGGGAGGAACGGA
AGGAAAGAGGACGAAATCGCCTCTTCCCCATACCTCTTCCTCGCTTTCTC
CCCTCCCCTCTTCACTCTTGCTAGTCTTTTGAAGCACACCACTCTGTCGT
CCCGAGGGCCCGCCCTCTCTCCCGCCCTCCTTCGTGCCCTCACCCACTCC
CTTCTGAGTGCTGTGGAGTGGTGTCATTCTAGGGGCGTGGTGATCAAAAA
CGTGGACCCGAATTTGATATTCCTTGATGAGGAGGGAAGGATCCGACTAG
GGTGTTTCGAAGAGGCGGTGGCTTTGCCGGCGGGAGGAGGAGGAGGAGGC
GGAGTTGGGAAGGAAGGAGGGAGGAAGGAGAAAGAGTTGAAAGGGAAGCA
GCTGGAGGGTGTGAAGCGGGCGATGGAGGAGATGTGGGATGAGGGAAAGC
GACGGAAGAAGAATTTGGTGGCGCCTGAGGTGGTATTGGGAGGGGATGCG
AGCCCTATGAGTGATTGTTGGTCGATGGGTTGCCTCTTATCTCTCTTGTT
GTTGTCCCGACCGTTATTCGATGCCCGGAGTAACGGTCAGTTGATGGAGC
ATGTCTACCGTGTGGTCGGGTCGTATGACGGGGTGTGGAAGCAGGGGACG
AGCCTCCCGTACTACCACCTGTGTAAGCCACAGCGGGCGAGCGGATATGC
GCCGCGGGTAGAGAAGTACGTGCGGGGTCTGGTGGAGAAGGCGAGCAAGG
AGGGGAGGGAGGGGTGGAGGGAGGATGGGGCAGGGGTGGTGGTGGGTTTG
GTAAGACTCGATCCGACGAAGAGAGCAACGGCCAGGGAGTGCTTGGAGAA
GGCGCCGTTTCTGGCCGTTTACAGGGAGGGGGGGAGAGAGGGAGGGAGGG
AGAGAGGGCATATTCACGGGGGGAATGGAGAAAGGGAGAGGGGGAAGGAG
AGGGAAGAAGCGAGGGAGGGATGGGAGGGGGTAGCGGCCATGGTCCCTCC
CCTGGTTCCTGGAATGGCGGCAAAGCCGTTTGGAGGAGGGAGGGAGGAAG
GGAGGGAGGAAGGGAGGGAGGGAGGGTTCACCCAGTATGAGTGTGTGGGC
AGGGAATGGATGGAGGGAGGGAGGGATTCAGAGGAGTTGAAGCAATTGTT
TGCCTTCTCGACGGGGCCTGGTTCTTCGTCTTGCACCCCATCCTCCCTCC
CACCCTCCTCCTCA

Synonyms

Publications