jgi.p|Nanoce1779_2|532867, mRNA_8640 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|532867
Unique NamemRNA_8640
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length696
Alignment locationscaffold_27:36590..37639 -

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Properties
Property NameValue
TranscriptId532953
TrackFilteredModels2
ProteinId532867
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_27supercontigscaffold_27:36590..37639 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|532867gene_8640Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|532867mRNA_8640-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_8640CDS_8640Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_8640 ID=mRNA_8640|Name=jgi.p|Nanoce1779_2|532867|organism=Nannochloropsis oceanica|type=mRNA|length=696bp
ATGGCCTTCCCCTCGTACCCCTCGTGCTCCTCCTCCTCTTCCTGCCACCC
TCCCTCTCTGGTTTGTCCCGGTTCCGTCTTAGTGAAGAAAGATAGAGTTA
AGACAATACTTTTCATTCGTCATGCCGAGGGGACACACAACCAAGCGGCG
AGAGAGGAAGGGGAGGGTGCGTACAAAAGCTGGGCATGGGAGGACGCAGA
ATTAACGACAGTGGGCATCGCCCAGGCACAAGACGGCTTGAGGAGGAGGG
GAGGGACGGAGGAAGCAGTGGACTTGGTGGTGGTCTCGCCCTTGAGGAGG
ACCAGGAGCAGCAGCGGCAGCGGCGGCAGTCGGAAGAAATTTCCTCCATT
TGTAGCCATGGAAGCAGTGCGCGAGACGGCGGGAATGGACCCCTGCAATA
AACGGTCGAACGTTTCTTATCTGACAAAGCGGTTTCCGCTCGTCGATTTT
TCGGAGATTCAGAGCGAGACCGACGTACTTTTTGATCCGTGTGCGTGGGA
GAGCGAGGAGAGCATGGCCGCGCGTGGGCACTACTTTTTGCATTGGTTGG
GCAAGAGGACAGAGAGACGCATCGCTGTAGTCACGCATGGAAGCTTCCTC
ATGACCATGTTTGAGAGAGTTCTGCAGGCTCCAAAGGAGATGAGGGAGTG
GATGGGGAATGCCGAGTGTCGGGCAGTGGCTGTCCATTATCCATGA
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protein sequence of jgi.p|Nanoce1779_2|532867

>mRNA_8640-protein ID=mRNA_8640-protein|Name=jgi.p|Nanoce1779_2|532867|organism=Nannochloropsis oceanica|type=polypeptide|length=232bp
MAFPSYPSCSSSSSCHPPSLVCPGSVLVKKDRVKTILFIRHAEGTHNQAA
REEGEGAYKSWAWEDAELTTVGIAQAQDGLRRRGGTEEAVDLVVVSPLRR
TRSSSGSGGSRKKFPPFVAMEAVRETAGMDPCNKRSNVSYLTKRFPLVDF
SEIQSETDVLFDPCAWESEESMAARGHYFLHWLGKRTERRIAVVTHGSFL
MTMFERVLQAPKEMREWMGNAECRAVAVHYP*
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mRNA from alignment at scaffold_27:36590..37639-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_8640 ID=mRNA_8640|Name=jgi.p|Nanoce1779_2|532867|organism=Nannochloropsis oceanica|type=mRNA|length=1050bp|location=Sequence derived from alignment at scaffold_27:36590..37639- (Nannochloropsis oceanica)
ATGGCCTTCCCCTCGTACCCCTCGTGCTCCTCCTCCTCTTCCTGCCACCC
TCCCTCTCTGGTTTGTCCCGGTTCCGTCTTAGTGAAGAAAGATAGAGTTA
AGACAATACTTTTCATTCGTCATGCCGAGGGGACACACAACCAAGCGGCG
AGAGAGGAAGGGGAGGGTGCGTACAAAAGCTGGGCATGGGAGGACGCAGA
ATTAACGACAGTGGGCATCGCCCAGGCACAAGACGGCTTGAGGAGGAGGG
TGAGAGGGAGGGAGGGGGAGGAGGGAGGGGAGGAAGGAGAGGGAGGGACG
GAGGAAGCAGTGGACTTGGTGGTGGTCTCGCCCTTGAGGAGGACGTTACA
CACAGCGATGCTGGCCTTTGGGGACGAGGGAGGGGGGAAGGAAGGGGAGA
AGGAAAGGATTCAAAGGGGGGAGGGAGAAGGCAGAGAAAAGTGTAATGGT
AGCAACAACAACAGCAACAGCAGGAGCAGCAGCGGCAGCGGCGGCAGTCG
GAAGAAATTTCCTCCATTTGTAGCCATGGAAGCAGTGCGCGAGACGGCGG
GAATGGACCCCTGCAATAAACGGTCGAACGTTTCTTATCTGACAAAGCGG
TTTCCGCTCGTCGATTTTTCGGAGGTAACATCATGGGCACTAAACTTGAA
TCTGTGTCTTTCGCTTCTCTTTTATTTTGATGATCAATCGCGGATGGACT
CCGCCACCCTTACATGCTTCTCACACTTTCTTTCTTCCTTGGACACCACC
ATATTTATAATCATTTTTCCTCATTTTTGACCTTCGTTTCGTCAATACCA
CCATAAATAGATTCAGAGCGAGACCGACGTACTTTTTGATCCGTGTGCGT
GGGAGAGCGAGGAGAGCATGGCCGCGCGTGGGCACTACTTTTTGCATTGG
TTGGGCAAGAGGACAGAGAGACGCATCGCTGTAGTCACGCATGGAAGCTT
CCTCATGACCATGTTTGAGAGAGTTCTGCAGGCTCCAAAGGAGATGAGGG
AGTGGATGGGGAATGCCGAGTGTCGGGCAGTGGCTGTCCATTATCCATGA
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Coding sequence (CDS) from alignment at scaffold_27:36590..37639-

>mRNA_8640 ID=mRNA_8640|Name=jgi.p|Nanoce1779_2|532867|organism=Nannochloropsis oceanica|type=CDS|length=2784bp|location=Sequence derived from alignment at scaffold_27:36590..37639- (Nannochloropsis oceanica)
ATTCAGAGCGAGACCGACGTACTTTTTGATCCGTGTGCGTGGGAGAGCGA
GGAGAGCATGGCCGCGCGTGGGCACTACTTTTTGCATTGGTTGGGCAAGA
GGACAGAGAGACGCATCGCTGTAGTCACGCATGGAAGCTTCCTCATGACC
ATGTTTGAGAGAGTTCTGCAGGCTCCAAAGGAGATGAGGGAGTGGATGGG
GAATGCCGAGTGTCGGGCAGTGGCTGTCCATTATCCATGACAGGAGCAGC
AGCGGCAGCGGCGGCAGTCGGAAGAAATTTCCTCCATTTGTAGCCATGGA
AGCAGTGCGCGAGACGGCGGGAATGGACCCCTGCAATAAACGGTCGAACG
TTTCTTATCTGACAAAGCGGTTTCCGCTCGTCGATTTTTCGGAGGGAGGG
ACGGAGGAAGCAGTGGACTTGGTGGTGGTCTCGCCCTTGAGGAGGACATG
GCCTTCCCCTCGTACCCCTCGTGCTCCTCCTCCTCTTCCTGCCACCCTCC
CTCTCTGGTTTGTCCCGGTTCCGTCTTAGTGAAGAAAGATAGAGTTAAGA
CAATACTTTTCATTCGTCATGCCGAGGGGACACACAACCAAGCGGCGAGA
GAGGAAGGGGAGGGTGCGTACAAAAGCTGGGCATGGGAGGACGCAGAATT
AACGACAGTGGGCATCGCCCAGGCACAAGACGGCTTGAGGAGGAGGATTC
AGAGCGAGACCGACGTACTTTTTGATCCGTGTGCGTGGGAGAGCGAGGAG
AGCATGGCCGCGCGTGGGCACTACTTTTTGCATTGGTTGGGCAAGAGGAC
AGAGAGACGCATCGCTGTAGTCACGCATGGAAGCTTCCTCATGACCATGT
TTGAGAGAGTTCTGCAGGCTCCAAAGGAGATGAGGGAGTGGATGGGGAAT
GCCGAGTGTCGGGCAGTGGCTGTCCATTATCCATGACAGGAGCAGCAGCG
GCAGCGGCGGCAGTCGGAAGAAATTTCCTCCATTTGTAGCCATGGAAGCA
GTGCGCGAGACGGCGGGAATGGACCCCTGCAATAAACGGTCGAACGTTTC
TTATCTGACAAAGCGGTTTCCGCTCGTCGATTTTTCGGAGGGAGGGACGG
AGGAAGCAGTGGACTTGGTGGTGGTCTCGCCCTTGAGGAGGACATGGCCT
TCCCCTCGTACCCCTCGTGCTCCTCCTCCTCTTCCTGCCACCCTCCCTCT
CTGGTTTGTCCCGGTTCCGTCTTAGTGAAGAAAGATAGAGTTAAGACAAT
ACTTTTCATTCGTCATGCCGAGGGGACACACAACCAAGCGGCGAGAGAGG
AAGGGGAGGGTGCGTACAAAAGCTGGGCATGGGAGGACGCAGAATTAACG
ACAGTGGGCATCGCCCAGGCACAAGACGGCTTGAGGAGGAGGATTCAGAG
CGAGACCGACGTACTTTTTGATCCGTGTGCGTGGGAGAGCGAGGAGAGCA
TGGCCGCGCGTGGGCACTACTTTTTGCATTGGTTGGGCAAGAGGACAGAG
AGACGCATCGCTGTAGTCACGCATGGAAGCTTCCTCATGACCATGTTTGA
GAGAGTTCTGCAGGCTCCAAAGGAGATGAGGGAGTGGATGGGGAATGCCG
AGTGTCGGGCAGTGGCTGTCCATTATCCATGACAGGAGCAGCAGCGGCAG
CGGCGGCAGTCGGAAGAAATTTCCTCCATTTGTAGCCATGGAAGCAGTGC
GCGAGACGGCGGGAATGGACCCCTGCAATAAACGGTCGAACGTTTCTTAT
CTGACAAAGCGGTTTCCGCTCGTCGATTTTTCGGAGGGAGGGACGGAGGA
AGCAGTGGACTTGGTGGTGGTCTCGCCCTTGAGGAGGACATGGCCTTCCC
CTCGTACCCCTCGTGCTCCTCCTCCTCTTCCTGCCACCCTCCCTCTCTGG
TTTGTCCCGGTTCCGTCTTAGTGAAGAAAGATAGAGTTAAGACAATACTT
TTCATTCGTCATGCCGAGGGGACACACAACCAAGCGGCGAGAGAGGAAGG
GGAGGGTGCGTACAAAAGCTGGGCATGGGAGGACGCAGAATTAACGACAG
TGGGCATCGCCCAGGCACAAGACGGCTTGAGGAGGAGGATTCAGAGCGAG
ACCGACGTACTTTTTGATCCGTGTGCGTGGGAGAGCGAGGAGAGCATGGC
CGCGCGTGGGCACTACTTTTTGCATTGGTTGGGCAAGAGGACAGAGAGAC
GCATCGCTGTAGTCACGCATGGAAGCTTCCTCATGACCATGTTTGAGAGA
GTTCTGCAGGCTCCAAAGGAGATGAGGGAGTGGATGGGGAATGCCGAGTG
TCGGGCAGTGGCTGTCCATTATCCATGACAGGAGCAGCAGCGGCAGCGGC
GGCAGTCGGAAGAAATTTCCTCCATTTGTAGCCATGGAAGCAGTGCGCGA
GACGGCGGGAATGGACCCCTGCAATAAACGGTCGAACGTTTCTTATCTGA
CAAAGCGGTTTCCGCTCGTCGATTTTTCGGAGGGAGGGACGGAGGAAGCA
GTGGACTTGGTGGTGGTCTCGCCCTTGAGGAGGACATGGCCTTCCCCTCG
TACCCCTCGTGCTCCTCCTCCTCTTCCTGCCACCCTCCCTCTCTGGTTTG
TCCCGGTTCCGTCTTAGTGAAGAAAGATAGAGTTAAGACAATACTTTTCA
TTCGTCATGCCGAGGGGACACACAACCAAGCGGCGAGAGAGGAAGGGGAG
GGTGCGTACAAAAGCTGGGCATGGGAGGACGCAGAATTAACGACAGTGGG
CATCGCCCAGGCACAAGACGGCTTGAGGAGGAGG
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Synonyms
Publications