jgi.p|Nanoce1779_2|574427, mRNA_864 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|574427
Unique Name	mRNA_864
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1649
Alignment location	scaffold_2:608725..610373 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	574513
Track	FilteredModels2
ProteinId	574427

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_2	supercontig	scaffold_2:608725..610373 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|574427	gene_864	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|574427	mRNA_864-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_864	CDS_864	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_2:608725..610373+
coding sequence from alignment at scaffold_2:608725..610373+

mRNA sequence

>mRNA_864 ID=mRNA_864|Name=jgi.p|Nanoce1779_2|574427|organism=Nannochloropsis oceanica|type=mRNA|length=1649bp
TTCGAAAGCTTCTTGCCTATGCGCGAGTCGAGGCAGGACAGACAGCAGGC
ACCGATTCGGCCAGCCCTCGCCCTGGAAAGACCTGTGTCGGTTTTTGGTC
GGCCGTGGATGAGCTTTAGAGTGTACACAAAGGGCTCACATATCGCGGCT
GTTGGGCTCAGAGCGGTGGGGCATCGCCCGCTCCGAAATCACTCTCTCGG
CGAGCACACATCCGCCCTCAAGAACTAAAACAAAGTACACACATGACATG
CTACAGACATGCCGCCAGACGATGTCATCGTCGCGGCTCTGGAGATGGTA
TTGCAGCCGGTTCTCCTGCTGTCGTCAATCCATGCCTTGTCCTGCCTATC
GTCTGTTTTCCCATCATTGTCGACCTCCTCCAAGTCCACCACCGCCAGAC
TGGTAGGCATGTCCATGTCCACGCTACAGCTCCTCGGTCTACTCGCCTGG
TCGGACCCCCTTATGGCAATCATGCTGGGACTGGTGGCTTTGTGCGTGGC
CGGTAACATGTACAATGTAGCTCTTGCCGCAGCGGTGCTGCCTTCGCTTT
TGCTTGTGGTGCTCTCCCCGGAGCGACGGGCAGTAGTATTTTACCCTGAG
CCGATGGCGATGAGGCCTGACATGGGCATTTGGTGGTACCTCATGTCCGA
AGTATTCCGGCAATACCAACCTTACTTCCGCCTGATCTTAGCGGCCCACC
CCTTTTTGTACTTGCCTCCCTTGGCCTTCCGAGTCCTTGCAGGCAGCGCG
ACGTCGAAGCAACATCCCTTGCCCGAAGCATTACTCCGACTCCTTTACTT
AGTGACAGCTTCTATATCTATGCTCTTCCGTCCTTCTCCCATTCTGACAC
AACAGCTTTCTCTTGCCATCGCCCTTGTGGCGTGGCATCCAGACCTTCTG
ACGGCGCTTCGACCAAAGCTTCTGCTTCTGAGCGTGGGGTTGGGGGCCCC
TTTGATCCTAGCACCCATCATGGAATACTTATGGTTAGATGCACAATCGG
GAAATGCGAATTATTTGTATTTTCAGACATTGGTATGGACGGTCTTTCAT
TCGTTGCTGGTGCTGGAGGTGACTGTAGTGCTTGTGCAGCATGCGACTGA
CAGGAATCGAGTCGAGGAAGGAAGTGAGAATAGGACACAACGGACACAGA
AAGGAAGCAATGAGTTAAGGTAGCTGGAATGATTTGAATGTATATTTTCC
TGTTCTTGGATGGGTTCATCTATAGTGTGTGTAAGGATTGCTCCCAATAG
GCCAGAGACGACTTTTCCGATTTTCGGTCGCCGGTCGCACAAAGCCTGTG
TTTTATGTGTATCTTGTGTATAAGATTCGTAAACACCTGACTTAAATTGT
GATTGCTAGTGCCTGAGTCTCTCCAAGGGCTGTTGACGGAGAAGTGAAAA
GCGTGGTCACAGGCACGCCGGACTGCCCCAGAGGGACAATTAAAGCCTTA
TATTTTGAACTCTAAAGATATCTCTCACAAAAGTTCTTTTATTATTCTTC
TATACTCTATACATCTAGTGCGTACACAAACTATGACATTTCTATCTCCC
TCACTCCCCTTGCCCTTCGTCTACCCCCTCCAACTAAAACTCCTGCCCGT
CAAGCGCCAGCATGTTTAATGAATGCAACGCCATCGTACAAGCCACAAA

protein sequence of jgi.p|Nanoce1779_2|574427

>mRNA_864-protein ID=mRNA_864-protein|Name=jgi.p|Nanoce1779_2|574427|organism=Nannochloropsis oceanica|type=polypeptide|length=305bp
MPPDDVIVAALEMVLQPVLLLSSIHALSCLSSVFPSLSTSSKSTTARLVG
MSMSTLQLLGLLAWSDPLMAIMLGLVALCVAGNMYNVALAAAVLPSLLLV
VLSPERRAVVFYPEPMAMRPDMGIWWYLMSEVFRQYQPYFRLILAAHPFL
YLPPLAFRVLAGSATSKQHPLPEALLRLLYLVTASISMLFRPSPILTQQL
SLAIALVAWHPDLLTALRPKLLLLSVGLGAPLILAPIMEYLWLDAQSGNA
NYLYFQTLVWTVFHSLLVLEVTVVLVQHATDRNRVEEGSENRTQRTQKGS
NELR*

mRNA from alignment at scaffold_2:608725..610373+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_864 ID=mRNA_864|Name=jgi.p|Nanoce1779_2|574427|organism=Nannochloropsis oceanica|type=mRNA|length=1649bp|location=Sequence derived from alignment at scaffold_2:608725..610373+ (Nannochloropsis oceanica)
TTCGAAAGCTTCTTGCCTATGCGCGAGTCGAGGCAGGACAGACAGCAGGC
ACCGATTCGGCCAGCCCTCGCCCTGGAAAGACCTGTGTCGGTTTTTGGTC
GGCCGTGGATGAGCTTTAGAGTGTACACAAAGGGCTCACATATCGCGGCT
GTTGGGCTCAGAGCGGTGGGGCATCGCCCGCTCCGAAATCACTCTCTCGG
CGAGCACACATCCGCCCTCAAGAACTAAAACAAAGTACACACATGACATG
CTACAGACATGCCGCCAGACGATGTCATCGTCGCGGCTCTGGAGATGGTA
TTGCAGCCGGTTCTCCTGCTGTCGTCAATCCATGCCTTGTCCTGCCTATC
GTCTGTTTTCCCATCATTGTCGACCTCCTCCAAGTCCACCACCGCCAGAC
TGGTAGGCATGTCCATGTCCACGCTACAGCTCCTCGGTCTACTCGCCTGG
TCGGACCCCCTTATGGCAATCATGCTGGGACTGGTGGCTTTGTGCGTGGC
CGGTAACATGTACAATGTAGCTCTTGCCGCAGCGGTGCTGCCTTCGCTTT
TGCTTGTGGTGCTCTCCCCGGAGCGACGGGCAGTAGTATTTTACCCTGAG
CCGATGGCGATGAGGCCTGACATGGGCATTTGGTGGTACCTCATGTCCGA
AGTATTCCGGCAATACCAACCTTACTTCCGCCTGATCTTAGCGGCCCACC
CCTTTTTGTACTTGCCTCCCTTGGCCTTCCGAGTCCTTGCAGGCAGCGCG
ACGTCGAAGCAACATCCCTTGCCCGAAGCATTACTCCGACTCCTTTACTT
AGTGACAGCTTCTATATCTATGCTCTTCCGTCCTTCTCCCATTCTGACAC
AACAGCTTTCTCTTGCCATCGCCCTTGTGGCGTGGCATCCAGACCTTCTG
ACGGCGCTTCGACCAAAGCTTCTGCTTCTGAGCGTGGGGTTGGGGGCCCC
TTTGATCCTAGCACCCATCATGGAATACTTATGGTTAGATGCACAATCGG
GAAATGCGAATTATTTGTATTTTCAGACATTGGTATGGACGGTCTTTCAT
TCGTTGCTGGTGCTGGAGGTGACTGTAGTGCTTGTGCAGCATGCGACTGA
CAGGAATCGAGTCGAGGAAGGAAGTGAGAATAGGACACAACGGACACAGA
AAGGAAGCAATGAGTTAAGGTAGCTGGAATGATTTGAATGTATATTTTCC
TGTTCTTGGATGGGTTCATCTATAGTGTGTGTAAGGATTGCTCCCAATAG
GCCAGAGACGACTTTTCCGATTTTCGGTCGCCGGTCGCACAAAGCCTGTG
TTTTATGTGTATCTTGTGTATAAGATTCGTAAACACCTGACTTAAATTGT
GATTGCTAGTGCCTGAGTCTCTCCAAGGGCTGTTGACGGAGAAGTGAAAA
GCGTGGTCACAGGCACGCCGGACTGCCCCAGAGGGACAATTAAAGCCTTA
TATTTTGAACTCTAAAGATATCTCTCACAAAAGTTCTTTTATTATTCTTC
TATACTCTATACATCTAGTGCGTACACAAACTATGACATTTCTATCTCCC
TCACTCCCCTTGCCCTTCGTCTACCCCCTCCAACTAAAACTCCTGCCCGT
CAAGCGCCAGCATGTTTAATGAATGCAACGCCATCGTACAAGCCACAAA

Coding sequence (CDS) from alignment at scaffold_2:608725..610373+

>mRNA_864 ID=mRNA_864|Name=jgi.p|Nanoce1779_2|574427|organism=Nannochloropsis oceanica|type=CDS|length=915bp|location=Sequence derived from alignment at scaffold_2:608725..610373+ (Nannochloropsis oceanica)
ATGCCGCCAGACGATGTCATCGTCGCGGCTCTGGAGATGGTATTGCAGCC
GGTTCTCCTGCTGTCGTCAATCCATGCCTTGTCCTGCCTATCGTCTGTTT
TCCCATCATTGTCGACCTCCTCCAAGTCCACCACCGCCAGACTGGTAGGC
ATGTCCATGTCCACGCTACAGCTCCTCGGTCTACTCGCCTGGTCGGACCC
CCTTATGGCAATCATGCTGGGACTGGTGGCTTTGTGCGTGGCCGGTAACA
TGTACAATGTAGCTCTTGCCGCAGCGGTGCTGCCTTCGCTTTTGCTTGTG
GTGCTCTCCCCGGAGCGACGGGCAGTAGTATTTTACCCTGAGCCGATGGC
GATGAGGCCTGACATGGGCATTTGGTGGTACCTCATGTCCGAAGTATTCC
GGCAATACCAACCTTACTTCCGCCTGATCTTAGCGGCCCACCCCTTTTTG
TACTTGCCTCCCTTGGCCTTCCGAGTCCTTGCAGGCAGCGCGACGTCGAA
GCAACATCCCTTGCCCGAAGCATTACTCCGACTCCTTTACTTAGTGACAG
CTTCTATATCTATGCTCTTCCGTCCTTCTCCCATTCTGACACAACAGCTT
TCTCTTGCCATCGCCCTTGTGGCGTGGCATCCAGACCTTCTGACGGCGCT
TCGACCAAAGCTTCTGCTTCTGAGCGTGGGGTTGGGGGCCCCTTTGATCC
TAGCACCCATCATGGAATACTTATGGTTAGATGCACAATCGGGAAATGCG
AATTATTTGTATTTTCAGACATTGGTATGGACGGTCTTTCATTCGTTGCT
GGTGCTGGAGGTGACTGTAGTGCTTGTGCAGCATGCGACTGACAGGAATC
GAGTCGAGGAAGGAAGTGAGAATAGGACACAACGGACACAGAAAGGAAGC
AATGAGTTAAGGTAG

Synonyms

Publications