jgi.p|Nanoce1779_2|603429, mRNA_8639 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|603429
Unique NamemRNA_8639
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length633
Alignment locationscaffold_27:34539..35390 -

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Properties
Property NameValue
TranscriptId603515
TrackFilteredModels2
ProteinId603429
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_27supercontigscaffold_27:34539..35390 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|603429gene_8639Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|603429mRNA_8639-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_8639CDS_8639Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_8639 ID=mRNA_8639|Name=jgi.p|Nanoce1779_2|603429|organism=Nannochloropsis oceanica|type=mRNA|length=633bp
ACAACAGGAAGGTGCCATGCCCATCACGACAACATCGAGGGGCACAGACA
ACGGGTGGACATGGGGTTTCTACACCCTCTTGGCATTGGTAATGCTGGTG
TCTTTGACTTTCGAACAATGCATTGCGTTTGTCCCTCCGACACCACCACC
ACCAGCAAGCAGCAGTAGCAGCAGCAACAAGGGAGGAGAGAGCAGCACGG
CGGGCCGGGCCAGCACAGCAAGCGGGATTTCGTCAGCTTCTTATCAAGGT
ATGTGTTTCGTACAGAATGTTTCACTTCATCATCATCTCTGTCTGGCCTG
AAGCTACTACGGCAGGAGAGGGCAAGAAAATTACAAGTACAGGGAACATT
GATTGAAACAGTGACAAAGAAAGAGAGAGCGCGCACACACGCGAGGGCGA
TAATGCAAGGTCAGCGAACCCACTCGAAGCTCTACGTATGGCTCTCCACA
CGTCCTACGCCATCCCCCACCATGCCGGCCAGTCGATGTCCACTGCAGCT
GCTGTGGCTGCGACACGGACAGGAGGACGGTTGGGGGTTTTCACTCGGAG
GGAGGGAAGGAGGGAGGAAAAGGCGTCTACAGGGTGCCATCATCAGCAGC
AGCAGCATCAGCGCTATAACGACGATGACCACA
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protein sequence of jgi.p|Nanoce1779_2|603429

>mRNA_8639-protein ID=mRNA_8639-protein|Name=jgi.p|Nanoce1779_2|603429|organism=Nannochloropsis oceanica|type=polypeptide|length=95bp
MPITTTSRGTDNGWTWGFYTLLALVMLVSLTFEQCIAFVPPTPPPPASSS
SSSNKGGESSTAGRASTASGISSASYQGMCFVQNVSLHHHLCLA*
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mRNA from alignment at scaffold_27:34539..35390-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_8639 ID=mRNA_8639|Name=jgi.p|Nanoce1779_2|603429|organism=Nannochloropsis oceanica|type=mRNA|length=852bp|location=Sequence derived from alignment at scaffold_27:34539..35390- (Nannochloropsis oceanica)
ACAACAGGAAGGTGCCATGCCCATCACGACAACATCGAGGGGCACAGACA
ACGGGTGGACATGGGGTTTCTACACCCTCTTGGCATTGGTAATGCTGGTG
TCTTTGACTTTCGGTAAGTACCAGACCCCAGGAGAAAACTTCCGCCTGAC
ACAGAAGCAAGGAGGTCTCACTTTGCCGCCTCCTCCCCACACCCAGAACA
ATGCATTGCGTTTGTCCCTCCGACACCACCACCACCAGCAAGCAGCAGTA
GCAGCAGCAACAAGGGAGGAGAGAGCAGCACGGCGGGCCGGGCCAGCACA
GCAAGCGGGATTTCGTCAGCTTCTTATCAAGGTATGTGTTTCGTACAGAA
TGTTTCACTTCATCATCATCTCTGTCTGGCCTGAAGCTACTACGGCAGGA
GAGGGCAAGAAAATTACAAGTACAGGGAACATTGATTGAAACAGTGACAA
AGAAAGAGAGAGCGCGCACACACGCGAGGGTGCGTTGTGAAGAAGCCCCT
TCTGATCCTCGAGGACGGCCTGTCTCCATGTACATATCATACATGTATCT
CTGTCCATGAGTGAGTCACAACACTTTCGTGTTGATCGTTTCCCCTTCCC
TCCCCCTCTCCCTAGGCGATAATGCAAGGTCAGCGAACCCACTCGAAGCT
CTACGTATGGCTCTCCACACGTCCTACGCCATCCCCCACCATGCCGGCCA
GTCGATGTCCACTGCAGCTGCTGTGGCTGCGACACGGACAGGAGGACGGT
TGGGGGTTTTCACTCGGAGGGAGGGAAGGAGGGAGGAAAAGGCGTCTACA
GGGTGCCATCATCAGCAGCAGCAGCATCAGCGCTATAACGACGATGACCA
CA
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Coding sequence (CDS) from alignment at scaffold_27:34539..35390-

>mRNA_8639 ID=mRNA_8639|Name=jgi.p|Nanoce1779_2|603429|organism=Nannochloropsis oceanica|type=CDS|length=570bp|location=Sequence derived from alignment at scaffold_27:34539..35390- (Nannochloropsis oceanica)
AACAATGCATTGCGTTTGTCCCTCCGACACCACCACCACCAGCAAGCAGC
AGTAGCAGCAGCAACAAGGGAGGAGAGAGCAGCACGGCGGGCCGGGCCAG
CACAGCAAGCGGGATTTCGTCAGCTTCTTATCAAGGTATGTGTTTCGTAC
AGAATGTTTCACTTCATCATCATCTCTGTCTGGCCTGAATGCCCATCACG
ACAACATCGAGGGGCACAGACAACGGGTGGACATGGGGTTTCTACACCCT
CTTGGCATTGGTAATGCTGGTGTCTTTGACTTTCGAACAATGCATTGCGT
TTGTCCCTCCGACACCACCACCACCAGCAAGCAGCAGTAGCAGCAGCAAC
AAGGGAGGAGAGAGCAGCACGGCGGGCCGGGCCAGCACAGCAAGCGGGAT
TTCGTCAGCTTCTTATCAAGGTATGTGTTTCGTACAGAATGTTTCACTTC
ATCATCATCTCTGTCTGGCCTGAATGCCCATCACGACAACATCGAGGGGC
ACAGACAACGGGTGGACATGGGGTTTCTACACCCTCTTGGCATTGGTAAT
GCTGGTGTCTTTGACTTTCG
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Synonyms
Publications