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Properties
| Property Name | Value |
|---|
| TranscriptId | 212357 |
| Track | FilteredModels2 |
| ProteinId | 212271 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_27 | supercontig | scaffold_27:32550..34842 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_8638 ID=mRNA_8638|Name=jgi.p|Nanoce1779_2|212271|organism=Nannochloropsis oceanica|type=mRNA|length=1970bp
CTCTGTCCATGAGTGAGTCACAACACTTTCGTGTTGATCGTTTCCCCTTC
CCTCCCCCTCTCCCTAGGCGATAATGCAAGGTCAGCGAACCCACTCGAAG
CTCTACGTATGGCTCTCCACACGTCCTACGCCATCCCCCACCATGCCGGC
CAGTCGATGTCCACTGCAGCTGCTGTGGCTGCGACACGGACAGGAGGACG
GTTGGGGGTTTTCACTCGGAGGGAGGGAAGGAGGGAGGAAAAGGCGTCTA
CAGGGTGCCATCATCAGCAGCAGCAGCATCAGCGCTATAACGACGATGAC
CACAACAGGGATGGGGAAATGGCCTCCTCCTTCGTTTCCTCCCCCTCCTC
CCCCTCCTCCTCCTCACCCTCCTTCTCCTCCTCCACGTCTTCTTTTTCGT
CATTGCTACTGGCGACCCTCTCTCGTCCACCACCGTCATCATCAGCAACA
GCAGTAGGAGGAAGGGCAGCAGCAGGAACATCACAAGCATCAGAGATTGC
AATGGCATCGATGACGATTGCACCTCCAACACCTTCCTCTTCTTCTTCTT
CAGCAGCAGCAGCATCAGCAGCGGTCGCAGTTGAACCCAAAGCAAGCCGC
CGCCGCAATCGACAGAAGCAGCGCAAGCAACAGCACCAAGATCATCATCA
TCAACATCAACAACATGCCTCCTCCTTCCATCCCTCCCACTGGCACCCCA
GCCGCGTCACGGACATATCATCCGTTTCCGTCGACGGAGCCGTCAAAAAG
ATTCGCATCCAATCCCTCCCTGGTTGCCCTTCCCTCCTTCCCTCCCTCTT
CTGCCCCTCCATCTCCTCCCGACAGCCGGGCCAGTTTATTGCCCTGAGAA
TCCCCCTTCCCCTTGCGAAGGAGGGCGGGATGGAGGGCGAAAAGGAGGGA
GGGAAGTTTCTTACAGTCCTGGCCCCCATTGCCTCGGCGCCGGAGAGGGT
CGGTCCTAGAGGCCACGTGGATGTCCTGCTGGATGGGAAGGAGGAGCTCC
TCCCCCCTCCTTCCGTTCGTTCCTCCGTTGCAGGAGCTGCGGCAGCAACC
GACAGGCTGGCCTGGTCGCGACTACTCTCTTCCTTCTCCCCCGACACCCT
CCTAGAGGCCAGTGAGGAGCTAGGGCCCGGCTTTAGCCCCCTCGTCCTCC
CTCCCGGCCCCGCACTGCCTTTGTCCCTCCTGCCCTCCCTTCCCCTCACA
CTCCCTTCTCTTCTTCAGGAGCAGCGGGAGTTGTTGATTTTGGCGCGAGG
AACGGCTGGGATGGCGGCGGTAGCGGCGGTTCTGGAATGGCCGAAGGTAG
GGCTGCTGAGCGGCAAGTGCAGCAGCAACAGCAGCAGCAGCAGCAGCAGC
GGAGCTGGTGGCAAGAAAGGTTTCAAAATTACAGTCTTAATTGAAGTGAA
AAATGCTGTCAATGAAGCCTTGCGGCAACAGCAGAGGGAATGGAGGAGGA
GCATGCCGCACGTACAACTCATTCCCGTGCTTGCAGATTCTAAGGGGGAG
GTAGGGAAAGGAGGAGGGTTGGAAGCGGCGTTGTTTCGGTATGGTAAGGG
ACGGGGAAGAAGAGGAGGAACCGGAAGAAGAAGGCGGCGGCTTCGGCGGA
GAAGGTGGTGAAACCTTGAAAAAGAGTTACGCGTTCTCAAGTCTCATTAT
CTAGAGAAGAGATCACTAGGCCTTTGTATGTGCAAAATTGCCTTTTCCAG
CAGCAGCAGCAGCAGCAGTAAAGATGTTTTGGCGGTGGTGTGTATATTTA
GCAATGAAGATGAACGTATTAACACATATTAAAAAAATATCCCTCTTACA
TAAAGTAGAGAGTTTGATGCTTTAAATTTGAATTGAATCGGAGTTTGAAA
AATTGAAAACATGCAACAGGATTCGAGGAGAGGTAGCATTCGACTAGTTG
TAAATACAAATCCATATGTTCACATGTATGTTCACCTCTGACTAAATCAG
ACGCACCATTTCAGACGTCG back to topprotein sequence of jgi.p|Nanoce1779_2|212271 >mRNA_8638-protein ID=mRNA_8638-protein|Name=jgi.p|Nanoce1779_2|212271|organism=Nannochloropsis oceanica|type=polypeptide|length=501bp
MALHTSYAIPHHAGQSMSTAAAVAATRTGGRLGVFTRREGRREEKASTGC
HHQQQQHQRYNDDDHNRDGEMASSFVSSPSSPSSSSPSFSSSTSSFSSLL
LATLSRPPPSSSATAVGGRAAAGTSQASEIAMASMTIAPPTPSSSSSSAA
AASAAVAVEPKASRRRNRQKQRKQQHQDHHHQHQQHASSFHPSHWHPSRV
TDISSVSVDGAVKKIRIQSLPGCPSLLPSLFCPSISSRQPGQFIALRIPL
PLAKEGGMEGEKEGGKFLTVLAPIASAPERVGPRGHVDVLLDGKEELLPP
PSVRSSVAGAAAATDRLAWSRLLSSFSPDTLLEASEELGPGFSPLVLPPG
PALPLSLLPSLPLTLPSLLQEQRELLILARGTAGMAAVAAVLEWPKVGLL
SGKCSSNSSSSSSSGAGGKKGFKITVLIEVKNAVNEALRQQQREWRRSMP
HVQLIPVLADSKGEVGKGGGLEAALFRYGKGRGRRGGTGRRRRRLRRRRW
* back to topmRNA from alignment at scaffold_27:32550..34842- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_8638 ID=mRNA_8638|Name=jgi.p|Nanoce1779_2|212271|organism=Nannochloropsis oceanica|type=mRNA|length=2293bp|location=Sequence derived from alignment at scaffold_27:32550..34842- (Nannochloropsis oceanica)
CTCTGTCCATGAGTGAGTCACAACACTTTCGTGTTGATCGTTTCCCCTTC
CCTCCCCCTCTCCCTAGGCGATAATGCAAGGTCAGCGAACCCACTCGAAG
CTCTACGTATGGCTCTCCACACGTCCTACGCCATCCCCCACCATGCCGGC
CAGTCGATGTCCACTGCAGCTGCTGTGGCTGCGACACGGACAGGAGGACG
GTTGGGGGTTTTCACTCGGAGGGAGGGAAGGAGGGAGGAAAAGGCGTCTA
CAGGGTGCCATCATCAGCAGCAGCAGCATCAGCGCTATAACGACGATGAC
CACAACAGGGATGGGGAAATGGCCTCCTCCTTCGTTTCCTCCCCCTCCTC
CCCCTCCTCCTCCTCACCCTCCTTCTCCTCCTCCACGTCTTCTTTTTCGT
CATTGCTACTGGCGACCCTCTCTCGTCCACCACCGTCATCATCAGCAACA
GCAGTAGGAGGAAGGGCAGCAGCAGGAACATCACAAGCATCAGAGATTGC
AATGGCATCGATGACGATTGCACCTCCAACACCTTCCTCTTCTTCTTCTT
CAGCAGCAGCAGCATCAGCAGCGGTCGCAGTTGAACCCAAAGCAAGCCGC
CGCCGCAATCGACAGAAGCAGCGCAAGCAACAGCACCAAGATCATCATCA
TCAACATCAACAACATGCCTCCTCCTTCCATCCCTCCCACTGGCACCCCA
GCCGCGTCACGGACATATCATCCGTTTCCGTCGACGGAGCCGTCAAAAAG
ATTCGCATCCAATCCCTCCCTGGTTGCCCTTCCCTCCTTCCCTCCCTCTT
CTGCCCCTCCATCTCCTCCCGACAGCCGGGCCAGTTTATTGCCCTGAGAA
TCCCCCTTCCCCTTGCGAAGGAGGGCGGGATGGAGGGCGAAAAGGAGGGA
GGGAAGTTTCTTACAGTCCTGGCCCCCATTGCCTCGGCGCCGGAGAGGGT
CGGTCCTAGAGGCCACGTGGATGTCCTGCTGGATGGGAAGGAGGAGCTCC
TCCCCCCTCCTTCCGTTCGTTCCTCCGTTGCAGGAGCTGCGGCAGCAACC
GACAGGCTGGCCTGGTCGCGACTACTCTCTTCCTTCTCCCCCGACACCCT
CCTAGAGGCCAGTGAGGAGCTAGGGCCCGGCTTTAGCCCCCTCGTCCTCC
CTCCCGGCCCCGCACTGCCTTTGTCCCTCCTGCCCTCCCTTCCCCTCACA
CTCCCTTCTCTTCTTCAGGAGCAGCGGGAGTTGTTGATTTTGGCGCGAGG
AACGGCTGGGATGGCGGCGGTAGCGGCGGTTCTGGAATGGCCGAAGGTAG
GGCTGCTGAGCGGCAAGTGCAGCAGCAACAGCAGCAGCAGCAGCAGCAGC
GGAGCTGGTGGCAAGAAAGGTTTCAAAATTACAGTCTTAATTGAAGTGAA
AAATGCTGTCAATGAAGCCTTGCGGCAACAGCAGAGGGAATGGAGGAGGA
GCATGCCGCACGTACAACTCATTCCCGTGCTTGCAGATTCTAAGGGGGAG
GTAGGGAAAGGAGGAGGGTTGGAAGCGGCGTTGTTTCGGTATGGTAAGGG
AGGGAAGAAAGGAGGAGAGGGAGGGAAGGAGGGAGAGGGGGAGGTTGAGC
TCGCCTCGGTTCTCCGTGTAGATCCGAAGAGTTGTGCAGTGTTGTTGGCA
GGGATGGAGGGAGGGAGGGAGGGAGAGAAGGAGGTCAGGCGGCTGGAGAG
ATTGGCGGCGTCTCTGGTAATGGTGGGTGTGGATCCGGCGAGGATTTTGG
GGCAGGGGATGGAGAGATGGAGGGAGGGAGGGAGGGAGAAGACGGATGGG
GTTGGAGCGGGGAAGAAGAGGAGGAACCGGAAGAAGAAGGCGGCGGCTTC
GGCGGAGAAGGTGGTGAAACCTTGAAAAAGAGTTACGCGTTCTCAAGTCT
CATTATCTAGAGAGTGACGAGTGAGACAGGGTTGTACAAAGGGAGAAGAA
ACGGAGGGAGGATGAGGGTGAGGGTGGGAGAGAGATCACTAGGCCTTTGT
ATGTGCAAAATTGCCTTTTCCAGCAGCAGCAGCAGCAGCAGTAAAGATGT
TTTGGCGGTGGTGTGTATATTTAGCAATGAAGATGAACGTATTAACACAT
ATTAAAAAAATATCCCTCTTACATAAAGTAGAGAGTTTGATGCTTTAAAT
TTGAATTGAATCGGAGTTTGAAAAATTGAAAACATGCAACAGGATTCGAG
GAGAGGTAGCATTCGACTAGTTGTAAATACAAATCCATATGTTCACATGT
ATGTTCACCTCTGACTAAATCAGACGCACCATTTCAGACGTCG back to topCoding sequence (CDS) from alignment at scaffold_27:32550..34842- >mRNA_8638 ID=mRNA_8638|Name=jgi.p|Nanoce1779_2|212271|organism=Nannochloropsis oceanica|type=CDS|length=3006bp|location=Sequence derived from alignment at scaffold_27:32550..34842- (Nannochloropsis oceanica)
CGGGGAAGAAGAGGAGGAACCGGAAGAAGAAGGCGGCGGCTTCGGCGGAG
AAGGTGGTGAATGGCTCTCCACACGTCCTACGCCATCCCCCACCATGCCG
GCCAGTCGATGTCCACTGCAGCTGCTGTGGCTGCGACACGGACAGGAGGA
CGGTTGGGGGTTTTCACTCGGAGGGAGGGAAGGAGGGAGGAAAAGGCGTC
TACAGGGTGCCATCATCAGCAGCAGCAGCATCAGCGCTATAACGACGATG
ACCACAACAGGGATGGGGAAATGGCCTCCTCCTTCGTTTCCTCCCCCTCC
TCCCCCTCCTCCTCCTCACCCTCCTTCTCCTCCTCCACGTCTTCTTTTTC
GTCATTGCTACTGGCGACCCTCTCTCGTCCACCACCGTCATCATCAGCAA
CAGCAGTAGGAGGAAGGGCAGCAGCAGGAACATCACAAGCATCAGAGATT
GCAATGGCATCGATGACGATTGCACCTCCAACACCTTCCTCTTCTTCTTC
TTCAGCAGCAGCAGCATCAGCAGCGGTCGCAGTTGAACCCAAAGCAAGCC
GCCGCCGCAATCGACAGAAGCAGCGCAAGCAACAGCACCAAGATCATCAT
CATCAACATCAACAACATGCCTCCTCCTTCCATCCCTCCCACTGGCACCC
CAGCCGCGTCACGGACATATCATCCGTTTCCGTCGACGGAGCCGTCAAAA
AGATTCGCATCCAATCCCTCCCTGGTTGCCCTTCCCTCCTTCCCTCCCTC
TTCTGCCCCTCCATCTCCTCCCGACAGCCGGGCCAGTTTATTGCCCTGAG
AATCCCCCTTCCCCTTGCGAAGGAGGGCGGGATGGAGGGCGAAAAGGAGG
GAGGGAAGTTTCTTACAGTCCTGGCCCCCATTGCCTCGGCGCCGGAGAGG
GTCGGTCCTAGAGGCCACGTGGATGTCCTGCTGGATGGGAAGGAGGAGCT
CCTCCCCCCTCCTTCCGTTCGTTCCTCCGTTGCAGGAGCTGCGGCAGCAA
CCGACAGGCTGGCCTGGTCGCGACTACTCTCTTCCTTCTCCCCCGACACC
CTCCTAGAGGCCAGTGAGGAGCTAGGGCCCGGCTTTAGCCCCCTCGTCCT
CCCTCCCGGCCCCGCACTGCCTTTGTCCCTCCTGCCCTCCCTTCCCCTCA
CACTCCCTTCTCTTCTTCAGGAGCAGCGGGAGTTGTTGATTTTGGCGCGA
GGAACGGCTGGGATGGCGGCGGTAGCGGCGGTTCTGGAATGGCCGAAGGT
AGGGCTGCTGAGCGGCAAGTGCAGCAGCAACAGCAGCAGCAGCAGCAGCA
GCGGAGCTGGTGGCAAGAAAGGTTTCAAAATTACAGTCTTAATTGAAGTG
AAAAATGCTGTCAATGAAGCCTTGCGGCAACAGCAGAGGGAATGGAGGAG
GAGCATGCCGCACGTACAACTCATTCCCGTGCTTGCAGATTCTAAGGGGG
AGGTAGGGAAAGGAGGAGGGTTGGAAGCGGCGTTGTTTCGGTATGGTAAG
GGACGGGGAAGAAGAGGAGGAACCGGAAGAAGAAGGCGGCGGCTTCGGCG
GAGAAGGTGGTGAATGGCTCTCCACACGTCCTACGCCATCCCCCACCATG
CCGGCCAGTCGATGTCCACTGCAGCTGCTGTGGCTGCGACACGGACAGGA
GGACGGTTGGGGGTTTTCACTCGGAGGGAGGGAAGGAGGGAGGAAAAGGC
GTCTACAGGGTGCCATCATCAGCAGCAGCAGCATCAGCGCTATAACGACG
ATGACCACAACAGGGATGGGGAAATGGCCTCCTCCTTCGTTTCCTCCCCC
TCCTCCCCCTCCTCCTCCTCACCCTCCTTCTCCTCCTCCACGTCTTCTTT
TTCGTCATTGCTACTGGCGACCCTCTCTCGTCCACCACCGTCATCATCAG
CAACAGCAGTAGGAGGAAGGGCAGCAGCAGGAACATCACAAGCATCAGAG
ATTGCAATGGCATCGATGACGATTGCACCTCCAACACCTTCCTCTTCTTC
TTCTTCAGCAGCAGCAGCATCAGCAGCGGTCGCAGTTGAACCCAAAGCAA
GCCGCCGCCGCAATCGACAGAAGCAGCGCAAGCAACAGCACCAAGATCAT
CATCATCAACATCAACAACATGCCTCCTCCTTCCATCCCTCCCACTGGCA
CCCCAGCCGCGTCACGGACATATCATCCGTTTCCGTCGACGGAGCCGTCA
AAAAGATTCGCATCCAATCCCTCCCTGGTTGCCCTTCCCTCCTTCCCTCC
CTCTTCTGCCCCTCCATCTCCTCCCGACAGCCGGGCCAGTTTATTGCCCT
GAGAATCCCCCTTCCCCTTGCGAAGGAGGGCGGGATGGAGGGCGAAAAGG
AGGGAGGGAAGTTTCTTACAGTCCTGGCCCCCATTGCCTCGGCGCCGGAG
AGGGTCGGTCCTAGAGGCCACGTGGATGTCCTGCTGGATGGGAAGGAGGA
GCTCCTCCCCCCTCCTTCCGTTCGTTCCTCCGTTGCAGGAGCTGCGGCAG
CAACCGACAGGCTGGCCTGGTCGCGACTACTCTCTTCCTTCTCCCCCGAC
ACCCTCCTAGAGGCCAGTGAGGAGCTAGGGCCCGGCTTTAGCCCCCTCGT
CCTCCCTCCCGGCCCCGCACTGCCTTTGTCCCTCCTGCCCTCCCTTCCCC
TCACACTCCCTTCTCTTCTTCAGGAGCAGCGGGAGTTGTTGATTTTGGCG
CGAGGAACGGCTGGGATGGCGGCGGTAGCGGCGGTTCTGGAATGGCCGAA
GGTAGGGCTGCTGAGCGGCAAGTGCAGCAGCAACAGCAGCAGCAGCAGCA
GCAGCGGAGCTGGTGGCAAGAAAGGTTTCAAAATTACAGTCTTAATTGAA
GTGAAAAATGCTGTCAATGAAGCCTTGCGGCAACAGCAGAGGGAATGGAG
GAGGAGCATGCCGCACGTACAACTCATTCCCGTGCTTGCAGATTCTAAGG
GGGAGGTAGGGAAAGGAGGAGGGTTGGAAGCGGCGTTGTTTCGGTATGGT
AAGGGA back to top
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