jgi.p|Nanoce1779_2|212260, mRNA_8634 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|212260
Unique Name	mRNA_8634
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1268
Alignment location	scaffold_27:26752..28262 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	212346
Track	FilteredModels2
ProteinId	212260

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_27	supercontig	scaffold_27:26752..28262 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|212260	gene_8634	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|212260	mRNA_8634-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_8634	CDS_8634	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_27:26752..28262+
coding sequence from alignment at scaffold_27:26752..28262+

mRNA sequence

>mRNA_8634 ID=mRNA_8634|Name=jgi.p|Nanoce1779_2|212260|organism=Nannochloropsis oceanica|type=mRNA|length=1268bp
CCAGCGAGGCGATCTTTGAGCTGAGCCAGGACTTGATCTTGTTGGGGAGG
GGTGGAAGGTGTTGTTATTCAGGACCGAGGGAGGCGGCTGTGGGATTCTT
CCAACGGGTCGAGAGGGAGATGTTAAGATTGAATGCAAACATGGCAATCA
TCCCAGGAAAAAGGGGCCTTGACGACGAGGGCGATGGAAAGGGACGACAG
CAGGCCGCTGCTCTTGCGCCTGGTGCTCGCAAGGAGGGAGGGGAGGAGGG
AGGGGAGGAGGGGAAGATGGTTGGTGCGACCCTTCCCTCCCTCCCTCCGT
CCCCCATCCCCTCCTCTACCCTTGCTACGGCCAAGCCCCCCCCTCCCTCT
TTCCTCTTCTCCCTCCGGCTGCATCTTCACCTCCTCCTGCTCCTCCTTTG
CAAACCCAGCCGACTACCTCCTCTTCCTACTCGCCTCCTCCTCCTTCTCC
TCCTCCTTTTCCTCCACGTCCTTCTCCTCCCTCTCCTCCACCCTCTCCTC
TTCTATTCCTTCCTCCCTTCCTCCCTCCCACTCCCAGCAATACGACAACG
GAACCCACACTACAGCCAACATCCATGCCTCCCTCCTCCATTGCCATCCA
CCACATGAAGGGGGACAGGAGGAAGGCGAGGAGGACCTGAACTACCCCAG
CCAGAGTAGAATCGAATGGGGCAGGGGAAACGAATGGAACACAGAGAAGG
GGGGAAGGAAGGGAGGGCTACCTCCTCCTTCTTCCCGGCCTTCTTTGTGG
TCTCAAGTCCGAACACAGTGCGAGCGAGGGTGGCTGGTGATGAGGAGGCA
ACCGAAGTTAATCAGAACGATCTACGGGCGAGAAGCGCTTTCAGGCTGTC
TCTACGGACTCATTTATTTCGGACAGGGGAAGGTAGTTGGAGATGGCGGT
GAAGAAGGAGGAGGAGGAGGGGCAGGGATTGCGCCTTCATCCTTCAACAT
CGTGTCGCTACTTTACTTTGCGGTGTACAACACGTCCTGGGCCAACATGG
AGACCCTTTCCCAATTTTTTTACTGGCCCTCTCCTCCCCTCTCATCCTCC
TCCCATTCGTCGCCTCGGCCTACCTCGTTTTCCTCCTCCTCGCCTTCCTC
CTCACCGGCCTCCCTCACCCTTTTCTCCCTACTTTCCTCCTTCCCTTCCT
CCTCATCTTCCTCGTCCTCCTCACCACCTACTTCCTGACGCTCGGCCTTG
CGGCGCGGCTCCAAAATCCGCAGTTTGCCTACGTCCTCACTCCTATCACC
TTCGTCATGATGGGCTCC

protein sequence of jgi.p|Nanoce1779_2|212260

>mRNA_8634-protein ID=mRNA_8634-protein|Name=jgi.p|Nanoce1779_2|212260|organism=Nannochloropsis oceanica|type=polypeptide|length=352bp
MQTWQSSQEKGALTTRAMERDDSRPLLLRLVLARREGRREGRRGRWLVRP
FPPSLRPPSPPLPLLRPSPPLPLSSSPSGCIFTSSCSSFANPADYLLFLL
ASSSFSSSFSSTSFSSLSSTLSSSIPSSLPPSHSQQYDNGTHTTANIHAS
LLHCHPPHEGGQEEGEEDLNYPSQSRIEWGRGNEWNTEKGGRKGGLPPPS
SRPSLWSQVRTQCERGWLVMRRQPKLIRTIYGREALSGCLYGLIYFGQGK
VVGDGGEEGGGGGAGIAPSSFNIVSLLYFAVYNTSWANMETLSQFFYWPS
PPLSSSSHSSPRPTSFSSSSPSSSPASLTLFSLLSSFPSSSSSSSSSPPT
S*

mRNA from alignment at scaffold_27:26752..28262+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_8634 ID=mRNA_8634|Name=jgi.p|Nanoce1779_2|212260|organism=Nannochloropsis oceanica|type=mRNA|length=1511bp|location=Sequence derived from alignment at scaffold_27:26752..28262+ (Nannochloropsis oceanica)
CCAGCGAGGCGATCTTTGAGCTGAGCCAGGACTTGATCTTGTTGGGGAGG
GGTGGAAGGTGTTGTTATTCAGGACCGAGGGAGGCGGCTGTGGGATTCTT
CCAACGGGTCGAGAGGGAGATGTTAAGATTGAATGCAAACATGGCAATCA
TCCCAGGAAAAAGGGGCCTTGACGACGAGGGCGATGGAAAGGGACGACAG
CAGGCCGCTGCTCTTGCGCCTGGTGCTCGCAAGGAGGGAGGGGAGGAGGG
AGGGGAGGAGGGGAAGATGGTTGGTGCGACCCTTCCCTCCCTCCCTCCGT
CCCCCATCCCCTCCTCTACCCTTGCTACGGCCAAGCCCCCCCCTCCCTCT
TTCCTCTTCTCCCTCCGGCTGCATCTTCACCTCCTCCTGCTCCTCCTTTG
CAAACCCAGCCGACTACCTCCTCTTCCTACTCGCCTCCTCCTCCTTCTCC
TCCTCCTTTTCCTCCACGTCCTTCTCCTCCCTCTCCTCCACCCTCTCCTC
TTCTATTCCTTCCTCCCTTCCTCCCTCCCACTCCCAGCAATACGACAACG
GAACCCACACTACAGCCAACATCCATGCCTCCCTCCTCCATTGCCATCCA
CCACATGAAGGGGGACAGGAGGAAGGCGAGGAGGACCTGAACTACCCCAG
CCAGAGTAGAATCGAATGGGGCAGGGGAAACGAATGGAACACAGAGAAGG
GGGGAAGGAAGGGAGGGCTACCTCCTCCTTCTTCCCGGCCTTCTTTGTGG
TCTCAAGTCCGAACACAGTGCGAGCGAGGGTGGCTGGTGATGAGGAGGCA
ACCGAAGTTAATCAGAACGATCTACGGGCGAGAAGCGCTTTCAGGCTGTC
TCTACGGACTCATTTATTTCGGACAGGGGAAGGTAGTTGGAGATGGCGGT
GAAGAAGGAGGAGGAGGAGGGGCAGGGATTGCGCCTTCATCCTTCAACAT
CGTGTCGCTACTTTACTTTGCGGTACGTCATTTCTTCCCTCCCTCTCCCT
CCCCCTCCCCCCCTTCCCTTTCCCCATTTTCCCTTTTGTGTCCCATGGTA
AAGGTGTGGAGGCGCGTTGTCAACCCTTCCCTCCCTCCCTCCCTCCCTCC
CTCCCTCCCTTCCTCCCTTCCTCCCTCCCTCCCTCCCTCCCTCCCGCCCT
CCCTCCCTAGGTGTACAACACGTCCTGGGCCAACATGGAGACCCTTTCCC
AATTTTTTTACTGGCGTGCCCTTGCCTCACACGAGCTCGCCTCCTCCTCC
TACTCCCCCCTCTCTTTCCTCCTCTCCTCCCCTCTCATCCTCCTCCCATT
CGTCGCCTCGGCCTACCTCGTTTTCCTCCTCCTCGCCTTCCTCCTCACCG
GCCTCCCTCACCCTTTTCTCCCTACTTTCCTCCTTCCCTTCCTCCTCATC
TTCCTCGTCCTCCTCACCACCTACTTCCTGACGCTCGGCCTTGCGGCGCG
GCTCCAAAATCCGCAGTTTGCCTACGTCCTCACTCCTATCACCTTCGTCA
TGATGGGCTCC

Coding sequence (CDS) from alignment at scaffold_27:26752..28262+

>mRNA_8634 ID=mRNA_8634|Name=jgi.p|Nanoce1779_2|212260|organism=Nannochloropsis oceanica|type=CDS|length=3168bp|location=Sequence derived from alignment at scaffold_27:26752..28262+ (Nannochloropsis oceanica)
ATGCAAACATGGCAATCATCCCAGGAAAAAGGGGCCTTGACGACGAGGGC
GATGGAAAGGGACGACAGCAGGCCGCTGCTCTTGCGCCTGGTGCTCGCAA
GGAGGGAGGGGAGGAGGGAGGGGAGGAGGGGAAGATGGTTGGTGCGACCC
TTCCCTCCCTCCCTCCGTCCCCCATCCCCTCCTCTACCCTTGCTACGGCC
AAGCCCCCCCCTCCCTCTTTCCTCTTCTCCCTCCGGCTGCATCTTCACCT
CCTCCTGCTCCTCCTTTGCAAACCCAGCCGACTACCTCCTCTTCCTACTC
GCCTCCTCCTCCTTCTCCTCCTCCTTTTCCTCCACGTCCTTCTCCTCCCT
CTCCTCCACCCTCTCCTCTTCTATTCCTTCCTCCCTTCCTCCCTCCCACT
CCCAGCAATACGACAACGGAACCCACACTACAGCCAACATCCATGCCTCC
CTCCTCCATTGCCATCCACCACATGAAGGGGGACAGGAGGAAGGCGAGGA
GGACCTGAACTACCCCAGCCAGAGTAGAATCGAATGGGGCAGGGGAAACG
AATGGAACACAGAGAAGGGGGGAAGGAAGGGAGGGCTACCTCCTCCTTCT
TCCCGGCCTTCTTTGTGGTCTCAAGTCCGAACACAGTGCGAGCGAGGGTG
GCTGGTGATGAGGAGGCAACCGAAGTTAATCAGAACGATCTACGGGCGAG
AAGCGCTTTCAGGCTGTCTCTACGGACTCATTTATTTCGGACAGGGGAAG
GTAGTTGGAGATGGCGGTGAAGAAGGAGGAGGAGGAGGGGCAGGGATTGC
GCCTTCATCCTTCAACATCGTGTCGCTACTTTACTTTGCGGTGTACAACA
CGTCCTGGGCCAACATGGAGACCCTTTCCCAATTTTTTTACTGGCCCTCT
CCTCCCCTCTCATCCTCCTCCCATTCGTCGCCTCGGCCTACCTCGTTTTC
CTCCTCCTCGCCTTCCTCCTCACCGGCCTCCCTCACCCTTTTCTCCCTAC
TTTCCTCCTTCCCTTCCTCCTCATCTTCCTCGTCCTCCTCACCACCTACT
TCCTGAATGCAAACATGGCAATCATCCCAGGAAAAAGGGGCCTTGACGAC
GAGGGCGATGGAAAGGGACGACAGCAGGCCGCTGCTCTTGCGCCTGGTGC
TCGCAAGGAGGGAGGGGAGGAGGGAGGGGAGGAGGGGAAGATGGTTGGTG
CGACCCTTCCCTCCCTCCCTCCGTCCCCCATCCCCTCCTCTACCCTTGCT
ACGGCCAAGCCCCCCCCTCCCTCTTTCCTCTTCTCCCTCCGGCTGCATCT
TCACCTCCTCCTGCTCCTCCTTTGCAAACCCAGCCGACTACCTCCTCTTC
CTACTCGCCTCCTCCTCCTTCTCCTCCTCCTTTTCCTCCACGTCCTTCTC
CTCCCTCTCCTCCACCCTCTCCTCTTCTATTCCTTCCTCCCTTCCTCCCT
CCCACTCCCAGCAATACGACAACGGAACCCACACTACAGCCAACATCCAT
GCCTCCCTCCTCCATTGCCATCCACCACATGAAGGGGGACAGGAGGAAGG
CGAGGAGGACCTGAACTACCCCAGCCAGAGTAGAATCGAATGGGGCAGGG
GAAACGAATGGAACACAGAGAAGGGGGGAAGGAAGGGAGGGCTACCTCCT
CCTTCTTCCCGGCCTTCTTTGTGGTCTCAAGTCCGAACACAGTGCGAGCG
AGGGTGGCTGGTGATGAGGAGGCAACCGAAGTTAATCAGAACGATCTACG
GGCGAGAAGCGCTTTCAGGCTGTCTCTACGGACTCATTTATTTCGGACAG
GGGAAGGTAGTTGGAGATGGCGGTGAAGAAGGAGGAGGAGGAGGGGCAGG
GATTGCGCCTTCATCCTTCAACATCGTGTCGCTACTTTACTTTGCGGTGT
ACAACACGTCCTGGGCCAACATGGAGACCCTTTCCCAATTTTTTTACTGG
CCCTCTCCTCCCCTCTCATCCTCCTCCCATTCGTCGCCTCGGCCTACCTC
GTTTTCCTCCTCCTCGCCTTCCTCCTCACCGGCCTCCCTCACCCTTTTCT
CCCTACTTTCCTCCTTCCCTTCCTCCTCATCTTCCTCGTCCTCCTCACCA
CCTACTTCCTGAATGCAAACATGGCAATCATCCCAGGAAAAAGGGGCCTT
GACGACGAGGGCGATGGAAAGGGACGACAGCAGGCCGCTGCTCTTGCGCC
TGGTGCTCGCAAGGAGGGAGGGGAGGAGGGAGGGGAGGAGGGGAAGATGG
TTGGTGCGACCCTTCCCTCCCTCCCTCCGTCCCCCATCCCCTCCTCTACC
CTTGCTACGGCCAAGCCCCCCCCTCCCTCTTTCCTCTTCTCCCTCCGGCT
GCATCTTCACCTCCTCCTGCTCCTCCTTTGCAAACCCAGCCGACTACCTC
CTCTTCCTACTCGCCTCCTCCTCCTTCTCCTCCTCCTTTTCCTCCACGTC
CTTCTCCTCCCTCTCCTCCACCCTCTCCTCTTCTATTCCTTCCTCCCTTC
CTCCCTCCCACTCCCAGCAATACGACAACGGAACCCACACTACAGCCAAC
ATCCATGCCTCCCTCCTCCATTGCCATCCACCACATGAAGGGGGACAGGA
GGAAGGCGAGGAGGACCTGAACTACCCCAGCCAGAGTAGAATCGAATGGG
GCAGGGGAAACGAATGGAACACAGAGAAGGGGGGAAGGAAGGGAGGGCTA
CCTCCTCCTTCTTCCCGGCCTTCTTTGTGGTCTCAAGTCCGAACACAGTG
CGAGCGAGGGTGGCTGGTGATGAGGAGGCAACCGAAGTTAATCAGAACGA
TCTACGGGCGAGAAGCGCTTTCAGGCTGTCTCTACGGACTCATTTATTTC
GGACAGGGGAAGGTAGTTGGAGATGGCGGTGAAGAAGGAGGAGGAGGAGG
GGCAGGGATTGCGCCTTCATCCTTCAACATCGTGTCGCTACTTTACTTTG
CGGTGTACAACACGTCCTGGGCCAACATGGAGACCCTTTCCCAATTTTTT
TACTGGCCCTCTCCTCCCCTCTCATCCTCCTCCCATTCGTCGCCTCGGCC
TACCTCGTTTTCCTCCTCCTCGCCTTCCTCCTCACCGGCCTCCCTCACCC
TTTTCTCCCTACTTTCCTCCTTCCCTTCCTCCTCATCTTCCTCGTCCTCC
TCACCACCTACTTCCTGA

Synonyms

Publications