jgi.p|Nanoce1779_2|568703, mRNA_8633 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|568703
Unique NamemRNA_8633
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length432
Alignment locationscaffold_27:25046..25477 +

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Properties
Property NameValue
TranscriptId568789
TrackFilteredModels2
ProteinId568703
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_27supercontigscaffold_27:25046..25477 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|568703gene_8633Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|568703mRNA_8633-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_8633CDS_8633Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_8633 ID=mRNA_8633|Name=jgi.p|Nanoce1779_2|568703|organism=Nannochloropsis oceanica|type=mRNA|length=432bp
ATGAGCAAGACACCATTGCTGCACTTGGATGCAGACGATGAAGAAGACGA
GGACGAGGCTGAGCAAGTCTTGCCTCCAAGTCCTAGAGACTGGGGAGGTC
GGGCCCCAGTACTGCCAGCGCCACAGCAGCGTCCACGGCAGCAGGAGGAA
CGGAGGCAGCAGCTATCGCACCAGCAAGAGCAACAGCTGAACCCAAGAAT
GCTCTCTCCACGAAATGGGAGAGGTCGCCCCCCGCTGGTACCCAAGCGAC
AGCAGCAGCAGCAGCCACCTATCCTGCCTCCACGCAGGCTGCAAGGAAGG
GATAGCGACAGCAGCAGTAGCAGCAGCTTTCACGGGGACGGTGCGGAGAA
GGACGAGGAGGGAGAAGGAGAAGAAGAGGGAGAGGATGCCCCTCCTGTGA
GGATTACGGTAAGCACCTCGAAATGTCCATAA
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protein sequence of jgi.p|Nanoce1779_2|568703

>mRNA_8633-protein ID=mRNA_8633-protein|Name=jgi.p|Nanoce1779_2|568703|organism=Nannochloropsis oceanica|type=polypeptide|length=144bp
MSKTPLLHLDADDEEDEDEAEQVLPPSPRDWGGRAPVLPAPQQRPRQQEE
RRQQLSHQQEQQLNPRMLSPRNGRGRPPLVPKRQQQQQPPILPPRRLQGR
DSDSSSSSSFHGDGAEKDEEGEGEEEGEDAPPVRITVSTSKCP*
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mRNA from alignment at scaffold_27:25046..25477+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_8633 ID=mRNA_8633|Name=jgi.p|Nanoce1779_2|568703|organism=Nannochloropsis oceanica|type=mRNA|length=432bp|location=Sequence derived from alignment at scaffold_27:25046..25477+ (Nannochloropsis oceanica)
ATGAGCAAGACACCATTGCTGCACTTGGATGCAGACGATGAAGAAGACGA
GGACGAGGCTGAGCAAGTCTTGCCTCCAAGTCCTAGAGACTGGGGAGGTC
GGGCCCCAGTACTGCCAGCGCCACAGCAGCGTCCACGGCAGCAGGAGGAA
CGGAGGCAGCAGCTATCGCACCAGCAAGAGCAACAGCTGAACCCAAGAAT
GCTCTCTCCACGAAATGGGAGAGGTCGCCCCCCGCTGGTACCCAAGCGAC
AGCAGCAGCAGCAGCCACCTATCCTGCCTCCACGCAGGCTGCAAGGAAGG
GATAGCGACAGCAGCAGTAGCAGCAGCTTTCACGGGGACGGTGCGGAGAA
GGACGAGGAGGGAGAAGGAGAAGAAGAGGGAGAGGATGCCCCTCCTGTGA
GGATTACGGTAAGCACCTCGAAATGTCCATAA
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Coding sequence (CDS) from alignment at scaffold_27:25046..25477+

>mRNA_8633 ID=mRNA_8633|Name=jgi.p|Nanoce1779_2|568703|organism=Nannochloropsis oceanica|type=CDS|length=432bp|location=Sequence derived from alignment at scaffold_27:25046..25477+ (Nannochloropsis oceanica)
ATGAGCAAGACACCATTGCTGCACTTGGATGCAGACGATGAAGAAGACGA
GGACGAGGCTGAGCAAGTCTTGCCTCCAAGTCCTAGAGACTGGGGAGGTC
GGGCCCCAGTACTGCCAGCGCCACAGCAGCGTCCACGGCAGCAGGAGGAA
CGGAGGCAGCAGCTATCGCACCAGCAAGAGCAACAGCTGAACCCAAGAAT
GCTCTCTCCACGAAATGGGAGAGGTCGCCCCCCGCTGGTACCCAAGCGAC
AGCAGCAGCAGCAGCCACCTATCCTGCCTCCACGCAGGCTGCAAGGAAGG
GATAGCGACAGCAGCAGTAGCAGCAGCTTTCACGGGGACGGTGCGGAGAA
GGACGAGGAGGGAGAAGGAGAAGAAGAGGGAGAGGATGCCCCTCCTGTGA
GGATTACGGTAAGCACCTCGAAATGTCCATAA
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Synonyms
Publications