jgi.p|Nanoce1779_2|603415, mRNA_8632 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|603415
Unique NamemRNA_8632
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1734
Alignment locationscaffold_27:22794..24745 -

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Properties
Property NameValue
TranscriptId603501
TrackFilteredModels2
ProteinId603415
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_27supercontigscaffold_27:22794..24745 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|603415gene_8632Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|603415mRNA_8632-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_8632CDS_8632Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_8632 ID=mRNA_8632|Name=jgi.p|Nanoce1779_2|603415|organism=Nannochloropsis oceanica|type=mRNA|length=1734bp
CAGGCATACAAACACGGCTGCCGCTAGCCAAGACCAGCAGGGGATTTCGA
ACGGACACTACTTACAGGCACTAGCAGCAATACCACTACCAGCACTAGCA
CAAGCAGCACGACCATCATTACCGCAACAAAAATGTGTGGGCTTCTCTCG
TATTCATCGTTGGGGTCATCCTTTACCAGCCTGCAGAGTGGGTGGGGGCC
TGGGACGACAGCAGCCGCCCTCCTCTGTCGTAGCCTCCGCCGGCCAAGCA
GTAGTACCAGCAGCATCGGTACAAAGCAAATCACCAGCAGCAGCAGCAGC
ACAGCTAGTTATGGAGGATTATCACCGTTGTTGCTTTTGAAGAATGGTCG
TGCAAGCACCAGCAGTCTGAGCAGTAAAAGGTCAGCCTGTCTGAAGAGCA
GCAGCAGCAGCAACAGGAGCAGCACCAGCGGCATTGCGCTCCAAACATTA
TCAGCTACTAATACGCATCCGTCAAGCTTTGCATCTTGGCCGTCGCTGGG
TGAAGGAGGGCAAATTGGACAACAGCACCGGCACCAGCGACGAAGTTTCT
CAGTGCTGAAGAGAAGGGAGAGACTAACGGTGGTGGTGGTACGTGATCGA
GGGTGTAACGGCGAGTTGGCTAGCCGTTGTATTCTCTAAATTATCTCTTC
TTTTCTATGTCTTTATCTATCTCAGGATATGGACGAATGCCTCCTCCATA
GCAGGTTTGAGGAAGATATGCGCGACGAGCGTGGAAGGGACTTGGCACAT
CAATTGTTGCCCAACGGCGATAGTGAAAGTTTTCATTATCAGCACCAGAA
GGAGATAGGAGAGGCCCTTGGGGATGTCCGGCATCGGAGCGTTGACTACT
TCTGGCTGGAGCTGGAGGAGGGGGAGCGTGTGCGAGTGAACTTACGGCCC
AAAGTGGATGAATTTTTGCAACGTCTGAGTGACGAACACGATGTGTTTAT
CTTCACGGCTGCCACGGAAACCTACGCATCCCCCGTACTGGACCGTCTGG
ATCCCACCGGATCTTTAATCCGCGGGCGTTTTTACCGGCCTTCGTGTTTA
TTCAAGAAGGGAATGTATTTGAAGGACTTGGGCAGGATCCAGAAGGGAAT
CAAGAAGGAGACATTGGAAAGGGTGGTGCTGGTTGACAATAATCCGGTCT
CTTTCGTGGCCCAGCCCGACAATGGTATCCCTGTGCCTAGCTTCTACGAC
GACGTCAGTGACATGGCCTTGCCCCTGGTGAACGAGTTGATTGATGAGAA
ATTGAGTGCTGTTGAGGACGTGAGGCCAGTGCTACGGGAGCTGTTTGGGT
TAGAGGCGCAGCTGGGGAAGGTGCGACGGCAACTGCTGGGAGAGGACGAG
GACGAGAAGGGAAGGAGGGTGAGAAAGAGGGAGGAGAGGGAGGGGATGCA
GTGACACTCTTTCTGCTCTTGCTTTGGTTTGTCTGATGGGAAAGAAGGGG
AATAAGGGAACGCAGAATATGGATTCAATGACAAGAAACGGCTGGATTAA
ACAAAATGTTCAAAGACGGCTTTCGCGTGTAGCAGAGCGGCCTTTTAAAT
TTTCAAATAGCACGCACGTGTTTCCTGCGCTCACACACCCATTCGATGTC
ATGCCTCTTCACGATGGGCGGGTAAGTGGGGGGGTATATGCGTAAGGGAG
AGAGGACCATGAGTCATCGGGTGAAAAGGAGTCGATGAACGGATGGATCG
GATCGGAAAGAAAAAAGTAAGCGAGAGAAAGGGA
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protein sequence of jgi.p|Nanoce1779_2|603415

>mRNA_8632-protein ID=mRNA_8632-protein|Name=jgi.p|Nanoce1779_2|603415|organism=Nannochloropsis oceanica|type=polypeptide|length=242bp
MDECLLHSRFEEDMRDERGRDLAHQLLPNGDSESFHYQHQKEIGEALGDV
RHRSVDYFWLELEEGERVRVNLRPKVDEFLQRLSDEHDVFIFTAATETYA
SPVLDRLDPTGSLIRGRFYRPSCLFKKGMYLKDLGRIQKGIKKETLERVV
LVDNNPVSFVAQPDNGIPVPSFYDDVSDMALPLVNELIDEKLSAVEDVRP
VLRELFGLEAQLGKVRRQLLGEDEDEKGRRVRKREEREGMQ*
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mRNA from alignment at scaffold_27:22794..24745-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_8632 ID=mRNA_8632|Name=jgi.p|Nanoce1779_2|603415|organism=Nannochloropsis oceanica|type=mRNA|length=1952bp|location=Sequence derived from alignment at scaffold_27:22794..24745- (Nannochloropsis oceanica)
CAGGCATACAAACACGGCTGCCGCTAGCCAAGACCAGCAGGGGATTTCGA
ACGGACACTACTTACAGGCACTAGCAGCAATACCACTACCAGCACTAGCA
CAAGCAGCACGACCATCATTACCGCAACAAAAATGTGTGGGCTTCTCTCG
TATTCATCGTTGGGGTCATCCTTTACCAGCCTGCAGAGTGGGTGGGGGCC
TGGGACGACAGCAGCCGCCCTCCTCTGTCGTAGCCTCCGCCGGCCAAGCA
GTAGTACCAGCAGCATCGGTACAAAGCAAATCACCAGCAGCAGCAGCAGC
ACAGCTAGTTATGGAGGATTATCACCGTTGTTGCTTTTGAAGAATGGTCG
TGCAAGCACCAGCAGTCTGAGCAGTAAAAGGTCAGCCTGTCTGAAGAGCA
GCAGCAGCAGCAACAGGAGCAGCACCAGCGGCATTGCGCTCCAAACATTA
TCAGCTACTAATACGCATCCGTCAAGCTTTGCATCTTGGCCGTCGCTGGG
TGAAGGAGGGCAAATTGGACAACAGCACCGGCACCAGCGACGAAGTTTCT
CAGTGCTGAAGAGAAGGGAGAGACTAACGGTGGTGGTGGTACGTGATCGA
GGGTGTAACGGCGAGTTGGCTAGCCGTTGTATTCTCTAAATTATCTCTTC
TTTTCTATGTCTTTATCTATCTCAGGATATGGACGAATGCCTCCTCCATA
GCAGGTTTGAGGAAGATATGCGCGACGAGCGTGGAAGGGACTTGGCACAT
CAATTGTTGCCCAACGGCGATAGTGAAAGTTTTCATTATCAGCACCAGAA
GGAGATAGGAGAGGCCCTTGGGGATGTCCGGCATCGGAGCGTTGACTACT
TCTGGCTGGAGCTGGAGGAGGGGGAGCGTGTGCGAGGTATGTTTGTTTGA
CCGTCTCCTCCATACGTCATTTAAATCCCGTTGGGGGCATATGGAAGTAT
AAACCTACCTTATTCATGTGCCGATTATCTTCCTGGTGGTGGCATTGTGC
CGTGATTTTTCCTCAGCATGTAACAAGGCGCCTCACGTTTTCCCCTCCCT
ATCTCCCTCCTTCCCTCCCTTCTTCCCTCCTTCCCTCTCTCCCTGGACAT
GCAGTGAACTTACGGCCCAAAGTGGATGAATTTTTGCAACGTCTGAGTGA
CGAACACGATGTGTTTATCTTCACGGCTGCCACGGAAACCTACGCATCCC
CCGTACTGGACCGTCTGGATCCCACCGGATCTTTAATCCGCGGGCGTTTT
TACCGGCCTTCGTGTTTATTCAAGAAGGGAATGTATTTGAAGGACTTGGG
CAGGATCCAGAAGGGAATCAAGAAGGAGACATTGGAAAGGGTGGTGCTGG
TTGACAATAATCCGGTCTCTTTCGTGGCCCAGCCCGACAATGGTATCCCT
GTGCCTAGCTTCTACGACGACGTCAGTGACATGGCCTTGCCCCTGGTGAA
CGAGTTGATTGATGAGAAATTGAGTGCTGTTGAGGACGTGAGGCCAGTGC
TACGGGAGCTGTTTGGGTTAGAGGCGCAGCTGGGGAAGGTGCGACGGCAA
CTGCTGGGAGAGGACGAGGACGAGAAGGGAAGGAGGGTGAGAAAGAGGGA
GGAGAGGGAGGGGATGCAGTGACACTCTTTCTGCTCTTGCTTTGGTTTGT
CTGATGGGAAAGAAGGGGAATAAGGGAACGCAGAATATGGATTCAATGAC
AAGAAACGGCTGGATTAAACAAAATGTTCAAAGACGGCTTTCGCGTGTAG
CAGAGCGGCCTTTTAAATTTTCAAATAGCACGCACGTGTTTCCTGCGCTC
ACACACCCATTCGATGTCATGCCTCTTCACGATGGGCGGGTAAGTGGGGG
GGTATATGCGTAAGGGAGAGAGGACCATGAGTCATCGGGTGAAAAGGAGT
CGATGAACGGATGGATCGGATCGGAAAGAAAAAAGTAAGCGAGAGAAAGG
GA
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Coding sequence (CDS) from alignment at scaffold_27:22794..24745-

>mRNA_8632 ID=mRNA_8632|Name=jgi.p|Nanoce1779_2|603415|organism=Nannochloropsis oceanica|type=CDS|length=1452bp|location=Sequence derived from alignment at scaffold_27:22794..24745- (Nannochloropsis oceanica)
TGAACTTACGGCCCAAAGTGGATGAATTTTTGCAACGTCTGAGTGACGAA
CACGATGTGTTTATCTTCACGGCTGCCACGGAAACCTACGCATCCCCCGT
ACTGGACCGTCTGGATCCCACCGGATCTTTAATCCGCGGGCGTTTTTACC
GGCCTTCGTGTTTATTCAAGAAGGGAATGTATTTGAAGGACTTGGGCAGG
ATCCAGAAGGGAATCAAGAAGGAGACATTGGAAAGGGTGGTGCTGGTTGA
CAATAATCCGGTCTCTTTCGTGGCCCAGCCCGACAATGGTATCCCTGTGC
CTAGCTTCTACGACGACGTCAGTGACATGGCCTTGCCCCTGGTGAACGAG
TTGATTGATGAGAAATTGAGTGCTGTTGAGGACGTGAGGCCAGTGCTACG
GGAGCTGTTTGGGTTAGAGGCGCAGCTGGGGAAGGTGCGACGGCAACTGC
TGGGAGAGGACGAGGACGAGAAGGGAAGGAGGGTGAGAAAGAGGGAGGAG
AGGGAGGGGATGCAGTGAATGGACGAATGCCTCCTCCATAGCAGGTTTGA
GGAAGATATGCGCGACGAGCGTGGAAGGGACTTGGCACATCAATTGTTGC
CCAACGGCGATAGTGAAAGTTTTCATTATCAGCACCAGAAGGAGATAGGA
GAGGCCCTTGGGGATGTCCGGCATCGGAGCGTTGACTACTTCTGGCTGGA
GCTGGAGGAGGGGGAGCGTGTGCGAGTGAACTTACGGCCCAAAGTGGATG
AATTTTTGCAACGTCTGAGTGACGAACACGATGTGTTTATCTTCACGGCT
GCCACGGAAACCTACGCATCCCCCGTACTGGACCGTCTGGATCCCACCGG
ATCTTTAATCCGCGGGCGTTTTTACCGGCCTTCGTGTTTATTCAAGAAGG
GAATGTATTTGAAGGACTTGGGCAGGATCCAGAAGGGAATCAAGAAGGAG
ACATTGGAAAGGGTGGTGCTGGTTGACAATAATCCGGTCTCTTTCGTGGC
CCAGCCCGACAATGGTATCCCTGTGCCTAGCTTCTACGACGACGTCAGTG
ACATGGCCTTGCCCCTGGTGAACGAGTTGATTGATGAGAAATTGAGTGCT
GTTGAGGACGTGAGGCCAGTGCTACGGGAGCTGTTTGGGTTAGAGGCGCA
GCTGGGGAAGGTGCGACGGCAACTGCTGGGAGAGGACGAGGACGAGAAGG
GAAGGAGGGTGAGAAAGAGGGAGGAGAGGGAGGGGATGCAGTGAATGGAC
GAATGCCTCCTCCATAGCAGGTTTGAGGAAGATATGCGCGACGAGCGTGG
AAGGGACTTGGCACATCAATTGTTGCCCAACGGCGATAGTGAAAGTTTTC
ATTATCAGCACCAGAAGGAGATAGGAGAGGCCCTTGGGGATGTCCGGCAT
CGGAGCGTTGACTACTTCTGGCTGGAGCTGGAGGAGGGGGAGCGTGTGCG
AG
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Synonyms
Publications