jgi.p|Nanoce1779_2|603405, mRNA_8630 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|603405
Unique NamemRNA_8630
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1377
Alignment locationscaffold_27:16614..17990 +

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Properties
Property NameValue
TranscriptId603491
TrackFilteredModels2
ProteinId603405
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_27supercontigscaffold_27:16614..17990 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|603405gene_8630Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|603405mRNA_8630-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_8630CDS_8630Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_8630 ID=mRNA_8630|Name=jgi.p|Nanoce1779_2|603405|organism=Nannochloropsis oceanica|type=mRNA|length=1377bp
CAACAACAGCAACAGCAACAGCAACAGCAACAGCAGCAGCGATTGCCAAC
AACAATGTAGTGATGGTGGTATCCCGTCTTGTTGCCAGGATGCCTCCTGC
CCATGCTTTCGCCGGGCCCACCGAATCAGTCGCCACACCACAAAGAGAAT
CAACGACGCCTCCAATGCTCCCTCAAGGCAGCCGCTCTCCTCCTCCCTTC
TACCCCTGTCGACATTTGAGTTTGAATGTTCCGCCCGCTGCCGTTGCCCC
ACCAAGCGTTGCAGCCTCCGTCCCACCCAAATCCGTCCTCCCCCAGTCCT
TCAACTCCGATACACCACCGGCAAGGGCTGGGGTGTCTTCTTCACCCCCC
CCCCCCTCCTTCCTTCCCTCCCTCCCTCCCGATACATTTGTGGCCGAGTA
CGTAGGGGAGTTAATTGGAACCGAGGAGGCCCGTCATCGTTTGGCTCTCT
ACGACAAGCAGATGGCTTGCTCTCCTTCCCTCGCTCATTCTCATGCACAC
GCCAACTCTGCTGTAGTTGCTGCCGGTACTAAAGACCGGGGAGCGGAGGA
GCAATCGCGCATACAGCAACAATTGCGGCAGCCGCCGAAGCAGGAGCAGC
ACAACTACCTTCTAACCCTTCTGGAGGAGGGGTCATGCTTCCTCCTTCGT
ACCTCCCTTGACGCCACCCAGAAGGGGAACGTATCTCGTTTTTTTAACCA
CTCCTGTGCGCCCAATCTAAAGATAGCCTGCGTCAGAGACGGGGGGTTGT
TGCCCCGCCTATGCCTCTTTACCAGCAGGGAAGTTAAGGTGGGAGAGGAG
TTGACTTTTGCGTACGGGGAGGGAAGGAGTGAAGGACAGAGAGTGTGTCG
ATGTGGGGCACGAGAGTGTCAAGGTTTCTTGCCCTGCTACCCTGGCTTGT
AAAATTTTGACATAGGATCGTGATGCGCACACTCAGCTCCTCTGTGCGTA
AAACCATTTTTCGTCTCTCGAGTTGCGCTCTCTCGAAGCCCCACCACGCC
TCAGAGCCTACTTTCCACAGCCGCCGCTATGTGCACCTGTCGCAATCCAC
CTTGGATTGGCCTGGGTAACAAATACAACACCCATTGCCCTGAAAATGTG
GATGATCATTCGAGGATCATGCATATGTTTTAAGTGCCGACATGGCGCCT
GGACCATTGGACCTCCCATGGCCTGTGGGTCAAAAAGAAATACACAACCC
CCTGTGCACAAGTATGTTAAAGAAATATGGAGCCTCTTGACGCTCTAGAG
AAAAAAATGGTTTACGAATGGGGACGTGAAAGGGGGTGAAGGGCGAAAGG
GCGTGTGATGGGGAGGACGATGGGGAAGGAGGGGAAAGAGCGAACATGGG
TCTCACAAGCAAGGCAACAAAAGGCAC
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protein sequence of jgi.p|Nanoce1779_2|603405

>mRNA_8630-protein ID=mRNA_8630-protein|Name=jgi.p|Nanoce1779_2|603405|organism=Nannochloropsis oceanica|type=polypeptide|length=147bp
MACSPSLAHSHAHANSAVVAAGTKDRGAEEQSRIQQQLRQPPKQEQHNYL
LTLLEEGSCFLLRTSLDATQKGNVSRFFNHSCAPNLKIACVRDGGLLPRL
CLFTSREVKVGEELTFAYGEGRSEGQRVCRCGARECQGFLPCYPGL*
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mRNA from alignment at scaffold_27:16614..17990+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_8630 ID=mRNA_8630|Name=jgi.p|Nanoce1779_2|603405|organism=Nannochloropsis oceanica|type=mRNA|length=1377bp|location=Sequence derived from alignment at scaffold_27:16614..17990+ (Nannochloropsis oceanica)
CAACAACAGCAACAGCAACAGCAACAGCAACAGCAGCAGCGATTGCCAAC
AACAATGTAGTGATGGTGGTATCCCGTCTTGTTGCCAGGATGCCTCCTGC
CCATGCTTTCGCCGGGCCCACCGAATCAGTCGCCACACCACAAAGAGAAT
CAACGACGCCTCCAATGCTCCCTCAAGGCAGCCGCTCTCCTCCTCCCTTC
TACCCCTGTCGACATTTGAGTTTGAATGTTCCGCCCGCTGCCGTTGCCCC
ACCAAGCGTTGCAGCCTCCGTCCCACCCAAATCCGTCCTCCCCCAGTCCT
TCAACTCCGATACACCACCGGCAAGGGCTGGGGTGTCTTCTTCACCCCCC
CCCCCCTCCTTCCTTCCCTCCCTCCCTCCCGATACATTTGTGGCCGAGTA
CGTAGGGGAGTTAATTGGAACCGAGGAGGCCCGTCATCGTTTGGCTCTCT
ACGACAAGCAGATGGCTTGCTCTCCTTCCCTCGCTCATTCTCATGCACAC
GCCAACTCTGCTGTAGTTGCTGCCGGTACTAAAGACCGGGGAGCGGAGGA
GCAATCGCGCATACAGCAACAATTGCGGCAGCCGCCGAAGCAGGAGCAGC
ACAACTACCTTCTAACCCTTCTGGAGGAGGGGTCATGCTTCCTCCTTCGT
ACCTCCCTTGACGCCACCCAGAAGGGGAACGTATCTCGTTTTTTTAACCA
CTCCTGTGCGCCCAATCTAAAGATAGCCTGCGTCAGAGACGGGGGGTTGT
TGCCCCGCCTATGCCTCTTTACCAGCAGGGAAGTTAAGGTGGGAGAGGAG
TTGACTTTTGCGTACGGGGAGGGAAGGAGTGAAGGACAGAGAGTGTGTCG
ATGTGGGGCACGAGAGTGTCAAGGTTTCTTGCCCTGCTACCCTGGCTTGT
AAAATTTTGACATAGGATCGTGATGCGCACACTCAGCTCCTCTGTGCGTA
AAACCATTTTTCGTCTCTCGAGTTGCGCTCTCTCGAAGCCCCACCACGCC
TCAGAGCCTACTTTCCACAGCCGCCGCTATGTGCACCTGTCGCAATCCAC
CTTGGATTGGCCTGGGTAACAAATACAACACCCATTGCCCTGAAAATGTG
GATGATCATTCGAGGATCATGCATATGTTTTAAGTGCCGACATGGCGCCT
GGACCATTGGACCTCCCATGGCCTGTGGGTCAAAAAGAAATACACAACCC
CCTGTGCACAAGTATGTTAAAGAAATATGGAGCCTCTTGACGCTCTAGAG
AAAAAAATGGTTTACGAATGGGGACGTGAAAGGGGGTGAAGGGCGAAAGG
GCGTGTGATGGGGAGGACGATGGGGAAGGAGGGGAAAGAGCGAACATGGG
TCTCACAAGCAAGGCAACAAAAGGCAC
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Coding sequence (CDS) from alignment at scaffold_27:16614..17990+

>mRNA_8630 ID=mRNA_8630|Name=jgi.p|Nanoce1779_2|603405|organism=Nannochloropsis oceanica|type=CDS|length=441bp|location=Sequence derived from alignment at scaffold_27:16614..17990+ (Nannochloropsis oceanica)
ATGGCTTGCTCTCCTTCCCTCGCTCATTCTCATGCACACGCCAACTCTGC
TGTAGTTGCTGCCGGTACTAAAGACCGGGGAGCGGAGGAGCAATCGCGCA
TACAGCAACAATTGCGGCAGCCGCCGAAGCAGGAGCAGCACAACTACCTT
CTAACCCTTCTGGAGGAGGGGTCATGCTTCCTCCTTCGTACCTCCCTTGA
CGCCACCCAGAAGGGGAACGTATCTCGTTTTTTTAACCACTCCTGTGCGC
CCAATCTAAAGATAGCCTGCGTCAGAGACGGGGGGTTGTTGCCCCGCCTA
TGCCTCTTTACCAGCAGGGAAGTTAAGGTGGGAGAGGAGTTGACTTTTGC
GTACGGGGAGGGAAGGAGTGAAGGACAGAGAGTGTGTCGATGTGGGGCAC
GAGAGTGTCAAGGTTTCTTGCCCTGCTACCCTGGCTTGTAA
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Synonyms
Publications