jgi.p|Nanoce1779_2|144179, mRNA_863 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|144179
Unique NamemRNA_863
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1172
Alignment locationscaffold_2:606505..608038 -

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Properties
Property NameValue
TranscriptId144265
TrackFilteredModels2
ProteinId144179
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_2supercontigscaffold_2:606505..608038 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|144179gene_863Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|144179mRNA_863-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_863CDS_863Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_863 ID=mRNA_863|Name=jgi.p|Nanoce1779_2|144179|organism=Nannochloropsis oceanica|type=mRNA|length=1172bp
TTCTTTTTATCATAATTTTACATGTCCGAAAGCATGGTGTCGCTTCGCAT
TGCGCCTGCCAGAGAGCGGCTAGACCTGATTTCTTCCCACCAATCTACCA
TGCACCCACCTACCCACACTCTGTTTCCCAAACATGCCCACACAGATTTC
TTCAGACATTCTTTCCTCCGAAAATGAACTCAGAAAAGCTTCTGTTCAAC
TACCACGACGACGCCCAAGTCACGGAGGGAGACCAAATACTTTTCAGACC
CCCCGGATGGCTGAATGACCGATGCATCAATTTCTACTTCCGGGTATTGG
AGCACGAGGAGTTTCAGGATCGACCAGATTTATTGTTTATGGACCCGGCG
GTTGTATCGTGCATGTTGATACAGTGCACTGACCAAGGCGAGTTGGAGGA
AGTGGGGGAGGGCTTGAAGCTGGATAGACGAAGCATGGTCTTCATCCCCG
TCAACGACGCCGAGGATTTCAGGAGTGATTGCACGCACTGGAGCCTTCTC
GTCTACAGCGCTGGCAACGGCAGCAGCGCTCAGCCCGGGAAATTCTTCCA
CCTCGACTCGAGCGGTGGTAGGAATGAACCAGCCGCCAAAAGGACAGCTG
CTCAGTTTTGGCGCATGGTGGCAGGGAAGGAGGGAGGGAAGGAGGGAGGG
AAGGTGGAAGCTGTGCGGGGATGTCCACAGCAGGTGAACGGGTATGACTG
CGGGATGTATGTCTTGATCATGACGAAGTATTTGGCGCATCTTTATGTGA
CGGAGGGTGGGAGTGAAGAAGGGAGGGAACGGTCTCCGAAGCTTAATACG
ACGAGATTGGCGGCGCGTGTGACCCCGGATGCGATTGATGAAGCGAGGAG
GAGGATCGGGCTGAAGATCGAACAGCTTGCTGCTGCTGCTGATGGTGGTG
TTGATGGTGACTCTAGGGATTAGGGTCCCAATACTGCTACTGCTGAGTGC
TGCTGTGTGCTGCTGCTGCTGTGTGCTGCTGCTGCTGCTGCTGCTGATGA
TGATGATGATGCTTGTGTTGGGAAAATACCTATTGGTGTAGGGAAGTGTA
TATAAAATAAATACTACAAGGAATGTGTGACCACAAACACTCTAGGACTA
TTCAAAAGACTGGTTGAACAAGTAAAATAGTGGAGATACACGCCAGAGAA
AAGACCCTCAAGAATCTAGTGA
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protein sequence of jgi.p|Nanoce1779_2|144179

>mRNA_863-protein ID=mRNA_863-protein|Name=jgi.p|Nanoce1779_2|144179|organism=Nannochloropsis oceanica|type=polypeptide|length=250bp
MNSEKLLFNYHDDAQVTEGDQILFRPPGWLNDRCINFYFRVLEHEEFQDR
PDLLFMDPAVVSCMLIQCTDQGELEEVGEGLKLDRRSMVFIPVNDAEDFR
SDCTHWSLLVYSAGNGSSAQPGKFFHLDSSGGRNEPAAKRTAAQFWRMVA
GKEGGKEGGKVEAVRGCPQQVNGYDCGMYVLIMTKYLAHLYVTEGGSEEG
RERSPKLNTTRLAARVTPDAIDEARRRIGLKIEQLAAAADGGVDGDSRD*
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mRNA from alignment at scaffold_2:606505..608038-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_863 ID=mRNA_863|Name=jgi.p|Nanoce1779_2|144179|organism=Nannochloropsis oceanica|type=mRNA|length=1534bp|location=Sequence derived from alignment at scaffold_2:606505..608038- (Nannochloropsis oceanica)
TTCTTTTTATCATAATTTTACATGTCCGAAAGCATGGTGTCGCTTCGCAT
TGCGCCTGCCAGAGAGCGGCTAGACCTGATTTCTTCCCACCAATCTACCA
TGCACCCACCTACCCACACTCTGTTTCCCAAACATGCCCACACAGATTTC
TTCAGACATTCTTTCCTCCGAAAATGAACTCAGAAAAGCTTCTGTTCAAC
TACCACGACGACGCCCAAGTCACGGAGGGAGACCAAATACTTTTCAGACC
CCCCGGATGGCTGAATGACCGATGCATCAATTTCTACTTCCGGGTATTGG
AGCACGAGGAGTTTCAGGATCGACCAGATTTATTGTTTATGGACCCGGCG
GTTGTATCGTGCATGTTGATACAGTGCACTGGTAGGTGCTGGGATGGAAT
AAGGGGGGGGGGGGAGGGGCCGAATAGAATGAAGAAGGGAGGGAGGACGG
GCGGTGCAGGGACAGATCTGCAAAAATTTGAAGAGCAAAAAGTGACGGCT
CTTGGTAGGAGCTCTCATATGAATTTGTAACCTCCGTGACATCCATTGTT
TTATGGAAACTTATTTGGGAATCCATTACTTAAAATTGTATCGTAGACCA
AGGCGAGTTGGAGGAAGTGGGGGAGGGCTTGAAGCTGGATAGACGAAGCA
TGGTCTTCATCCCCGTCAACGACGCCGAGGATTTCAGGAGTGATTGCACG
CACTGGTATGTATGTTAGCATGTCACCGTTCTCCTCGGAGGTCTGCATGC
GTGTGACAACTTTGCTTCTTTTCCTACCCCGTCCGTTTCTCACAGGGTCT
CTTTCATTCCTCCACGACACTCACAGAACCTATTACACACATCCACTATC
AGGAGCCTTCTCGTCTACAGCGCTGGCAACGGCAGCAGCGCTCAGCCCGG
GAAATTCTTCCACCTCGACTCGAGCGGTGGTAGGAATGAACCAGCCGCCA
AAAGGACAGCTGCTCAGTTTTGGCGCATGGTGGCAGGGAAGGAGGGAGGG
AAGGAGGGAGGGAAGGTGGAAGCTGTGCGGGGATGTCCACAGCAGGTGAA
CGGGTATGACTGCGGGATGTATGTCTTGATCATGACGAAGTATTTGGCGC
ATCTTTATGTGACGGAGGGTGGGAGTGAAGAAGGGAGGGAACGGTCTCCG
AAGCTTAATACGACGAGATTGGCGGCGCGTGTGACCCCGGATGCGATTGA
TGAAGCGAGGAGGAGGATCGGGCTGAAGATCGAACAGCTTGCTGCTGCTG
CTGATGGTGGTGTTGATGGTGACTCTAGGGATTAGGGTCCCAATACTGCT
ACTGCTGAGTGCTGCTGTGTGCTGCTGCTGCTGTGTGCTGCTGCTGCTGC
TGCTGCTGATGATGATGATGATGCTTGTGTTGGGAAAATACCTATTGGTG
TAGGGAAGTGTATATAAAATAAATACTACAAGGAATGTGTGACCACAAAC
ACTCTAGGACTATTCAAAAGACTGGTTGAACAAGTAAAATAGTGGAGATA
CACGCCAGAGAAAAGACCCTCAAGAATCTAGTGA
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Coding sequence (CDS) from alignment at scaffold_2:606505..608038-

>mRNA_863 ID=mRNA_863|Name=jgi.p|Nanoce1779_2|144179|organism=Nannochloropsis oceanica|type=CDS|length=2250bp|location=Sequence derived from alignment at scaffold_2:606505..608038- (Nannochloropsis oceanica)
GAGCCTTCTCGTCTACAGCGCTGGCAACGGCAGCAGCGCTCAGCCCGGGA
AATTCTTCCACCTCGACTCGAGCGGTGGTAGGAATGAACCAGCCGCCAAA
AGGACAGCTGCTCAGTTTTGGCGCATGGTGGCAGGGAAGGAGGGAGGGAA
GGAGGGAGGGAAGGTGGAAGCTGTGCGGGGATGTCCACAGCAGGTGAACG
GGTATGACTGCGGGATGTATGTCTTGATCATGACGAAGTATTTGGCGCAT
CTTTATGTGACGGAGGGTGGGAGTGAAGAAGGGAGGGAACGGTCTCCGAA
GCTTAATACGACGAGATTGGCGGCGCGTGTGACCCCGGATGCGATTGATG
AAGCGAGGAGGAGGATCGGGCTGAAGATCGAACAGCTTGCTGCTGCTGCT
GATGGTGGTGTTGATGGTGACTCTAGGGATTAGACCAAGGCGAGTTGGAG
GAAGTGGGGGAGGGCTTGAAGCTGGATAGACGAAGCATGGTCTTCATCCC
CGTCAACGACGCCGAGGATTTCAGGAGTGATTGCACGCACTGATGAACTC
AGAAAAGCTTCTGTTCAACTACCACGACGACGCCCAAGTCACGGAGGGAG
ACCAAATACTTTTCAGACCCCCCGGATGGCTGAATGACCGATGCATCAAT
TTCTACTTCCGGGTATTGGAGCACGAGGAGTTTCAGGATCGACCAGATTT
ATTGTTTATGGACCCGGCGGTTGTATCGTGCATGTTGATACAGTGCACTG
GAGCCTTCTCGTCTACAGCGCTGGCAACGGCAGCAGCGCTCAGCCCGGGA
AATTCTTCCACCTCGACTCGAGCGGTGGTAGGAATGAACCAGCCGCCAAA
AGGACAGCTGCTCAGTTTTGGCGCATGGTGGCAGGGAAGGAGGGAGGGAA
GGAGGGAGGGAAGGTGGAAGCTGTGCGGGGATGTCCACAGCAGGTGAACG
GGTATGACTGCGGGATGTATGTCTTGATCATGACGAAGTATTTGGCGCAT
CTTTATGTGACGGAGGGTGGGAGTGAAGAAGGGAGGGAACGGTCTCCGAA
GCTTAATACGACGAGATTGGCGGCGCGTGTGACCCCGGATGCGATTGATG
AAGCGAGGAGGAGGATCGGGCTGAAGATCGAACAGCTTGCTGCTGCTGCT
GATGGTGGTGTTGATGGTGACTCTAGGGATTAGACCAAGGCGAGTTGGAG
GAAGTGGGGGAGGGCTTGAAGCTGGATAGACGAAGCATGGTCTTCATCCC
CGTCAACGACGCCGAGGATTTCAGGAGTGATTGCACGCACTGATGAACTC
AGAAAAGCTTCTGTTCAACTACCACGACGACGCCCAAGTCACGGAGGGAG
ACCAAATACTTTTCAGACCCCCCGGATGGCTGAATGACCGATGCATCAAT
TTCTACTTCCGGGTATTGGAGCACGAGGAGTTTCAGGATCGACCAGATTT
ATTGTTTATGGACCCGGCGGTTGTATCGTGCATGTTGATACAGTGCACTG
GAGCCTTCTCGTCTACAGCGCTGGCAACGGCAGCAGCGCTCAGCCCGGGA
AATTCTTCCACCTCGACTCGAGCGGTGGTAGGAATGAACCAGCCGCCAAA
AGGACAGCTGCTCAGTTTTGGCGCATGGTGGCAGGGAAGGAGGGAGGGAA
GGAGGGAGGGAAGGTGGAAGCTGTGCGGGGATGTCCACAGCAGGTGAACG
GGTATGACTGCGGGATGTATGTCTTGATCATGACGAAGTATTTGGCGCAT
CTTTATGTGACGGAGGGTGGGAGTGAAGAAGGGAGGGAACGGTCTCCGAA
GCTTAATACGACGAGATTGGCGGCGCGTGTGACCCCGGATGCGATTGATG
AAGCGAGGAGGAGGATCGGGCTGAAGATCGAACAGCTTGCTGCTGCTGCT
GATGGTGGTGTTGATGGTGACTCTAGGGATTAGACCAAGGCGAGTTGGAG
GAAGTGGGGGAGGGCTTGAAGCTGGATAGACGAAGCATGGTCTTCATCCC
CGTCAACGACGCCGAGGATTTCAGGAGTGATTGCACGCACTGATGAACTC
AGAAAAGCTTCTGTTCAACTACCACGACGACGCCCAAGTCACGGAGGGAG
ACCAAATACTTTTCAGACCCCCCGGATGGCTGAATGACCGATGCATCAAT
TTCTACTTCCGGGTATTGGAGCACGAGGAGTTTCAGGATCGACCAGATTT
ATTGTTTATGGACCCGGCGGTTGTATCGTGCATGTTGATACAGTGCACTG
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Synonyms
Publications