jgi.p|Nanoce1779_2|633049, mRNA_8628 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|633049
Unique Name	mRNA_8628
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1731
Alignment location	scaffold_27:13993..15723 -

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Properties


Property Name	Value
TranscriptId	633135
Track	FilteredModels2
ProteinId	633049

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_27	supercontig	scaffold_27:13993..15723 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|633049	gene_8628	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|633049	mRNA_8628-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_8628	CDS_8628	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_27:13993..15723-
coding sequence from alignment at scaffold_27:13993..15723-

mRNA sequence

>mRNA_8628 ID=mRNA_8628|Name=jgi.p|Nanoce1779_2|633049|organism=Nannochloropsis oceanica|type=mRNA|length=1731bp
ATTTCGTAAGGCGTCAGTCATGCAAATCGCCGCCGCCTTGAAAATGGTAA
CAGACGACATAAATCTCATACACCAAACACATATTTCCCCCTTTCACGAC
ATCATCACAGTATGTCAAGCTTGGCCATCACCACTGCCAGTAGCAGCAAC
GCAAGCAGCAGCAACAGAAGCAACAACAACAACAACAACGACAACAACAA
CAACAATCGCACCACCAATTGCAGGGGCGATTATGAGAGCGGGATCGAGG
GCCGAGACGAGGTATCCTCCTCATCCGTTCCTGATCCTCTACCACCACCA
TTACTATCATCATCATCTTCACCACCAAACCCGCCAGCCGCGCACAAGCG
GCGTTATTGTTCCTTTTTTCGGTATGGTCGCTGCACTCGCCTGTTTCCCT
CCACCTGTGCCTTTCTCCACGAGCCCTGCCCTCAAGGCCTTGACTGCACC
GATTTTAGATATTGCCAGAAAGGTCACCCACGAGCCTGGGAAGACAAGAG
GGAATGGGCCAAGCCCTGCCGTTTCTATCGGGCCGGTGGGTTCTGCATAC
GATTGGAACGCAAAGAATGTATGTACCAACATGTGATGTGCAGGGACGGG
AAGGACTGTCAGGAGGGAAGGTGTCAGTGGGGGCATCCATGGGAATGGCG
CTGTAAGGGTTGTGTCAAATGTGGGAGTGATGGAGGAAGATTGAAAAAAG
GGGAAGAGGGGTTGACAGGGGCAGGGGTTTTGCTGTTGTCGCCTTCTCAT
GAGGAAGGGAAGTATGACCTTGTGCTCGTTGAAGAGGAAAATTGGGATGC
GGACGGGGCAAGGGAGTGGGGAGAGATGGGCGGTCGGATCAGCAGTCTCG
GTAGAGACAAAGACGAAAACGAGGACGATGTTGGGGCGGTTGGAGGGAAT
GCCGTGGGGAGGGAGGAAGCACCTGTTGTGGCAGCACGCGAACTCTTGGA
GGAGACGGCAGGCACCGTGCAAGTCAGTGTCACTACAATCGGTGCTTGTC
CCTACGTGGATGTCGGTTTATTCCATCGGTATCGCTGCTATTTGCTCGTC
TTGGATAAGGCGGAGGTGAGTGTCGGAGTGTACCAACAAGCACGAAAGAA
TGCGGGGTTGCCTCGCAGCTGGAGGGAGACGTTGGACATGAGGCGATTTC
CATTGGACAGGGTTGGGGAGGAGATGAGGATGAAGAAGGGGAAGAGGAGG
GGGGCCACCAGGGAGGGCGAGGGTTACAAATCGGGAGCAGGGCAAAAGAA
GAGGAAGAGAGATGAGCGGGGCGGGGGCGAGGTGGACCAGGAGGGGGAGG
TGGCGGGGGATGAGGAGGAGGAGGAGGAGGAGGAGGGAATGGAAGGAGGA
GGGGAAGGACATGGAAATAAAAAGGTGAAGGACAAGGGCAAGGGCGAGAA
AATGGATGTGGAGGAGAAGGAGGAGGAGGAGGTTGGGGGGGGGGGGGGGG
CATTCGGTGTTGATGAACGATCTCATCTACAGTCACAAAGGCAGGGGTCA
TGCGTTGGCAGAGCGGGTGCGGCAAGTGCTGAGTGAAATGTTTCGTGCAG
GATGGCTAGACCCTTACTTCTCTTCATCTGCATCTCCACCTGCAGGCGCT
GCTGACGCTCCCTCGCCGCCAACATCGATGGTGGCAAAACGAGGGTGGGG
AGGAAGACGTGGGGAAGTGAGGGGGAGAAGAGGAGGAGGACGAGGAGGAG
GAAATTGAGTTCCTGCGGACGAAATGGTCAC

protein sequence of jgi.p|Nanoce1779_2|633049

>mRNA_8628-protein ID=mRNA_8628-protein|Name=jgi.p|Nanoce1779_2|633049|organism=Nannochloropsis oceanica|type=polypeptide|length=475bp
MSSLAITTASSSNASSSNRSNNNNNNDNNNNNRTTNCRGDYESGIEGRDE
VSSSSVPDPLPPPLLSSSSSPPNPPAAHKRRYCSFFRYGRCTRLFPSTCA
FLHEPCPQGLDCTDFRYCQKGHPRAWEDKREWAKPCRFYRAGGFCIRLER
KECMYQHVMCRDGKDCQEGRCQWGHPWEWRCKGCVKCGSDGGRLKKGEEG
LTGAGVLLLSPSHEEGKYDLVLVEEENWDADGAREWGEMGGRISSLGRDK
DENEDDVGAVGGNAVGREEAPVVAARELLEETAGTVQVSVTTIGACPYVD
VGLFHRYRCYLLVLDKAEVSVGVYQQARKNAGLPRSWRETLDMRRFPLDR
VGEEMRMKKGKRRGATREGEGYKSGAGQKKRKRDERGGGEVDQEGEVAGD
EEEEEEEEGMEGGGEGHGNKKVKDKGKGEKMDVEEKEEEEVGGGGGAFGV
DERSHLQSQRQGSCVGRAGAASAE*

mRNA from alignment at scaffold_27:13993..15723-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_8628 ID=mRNA_8628|Name=jgi.p|Nanoce1779_2|633049|organism=Nannochloropsis oceanica|type=mRNA|length=1731bp|location=Sequence derived from alignment at scaffold_27:13993..15723- (Nannochloropsis oceanica)
ATTTCGTAAGGCGTCAGTCATGCAAATCGCCGCCGCCTTGAAAATGGTAA
CAGACGACATAAATCTCATACACCAAACACATATTTCCCCCTTTCACGAC
ATCATCACAGTATGTCAAGCTTGGCCATCACCACTGCCAGTAGCAGCAAC
GCAAGCAGCAGCAACAGAAGCAACAACAACAACAACAACGACAACAACAA
CAACAATCGCACCACCAATTGCAGGGGCGATTATGAGAGCGGGATCGAGG
GCCGAGACGAGGTATCCTCCTCATCCGTTCCTGATCCTCTACCACCACCA
TTACTATCATCATCATCTTCACCACCAAACCCGCCAGCCGCGCACAAGCG
GCGTTATTGTTCCTTTTTTCGGTATGGTCGCTGCACTCGCCTGTTTCCCT
CCACCTGTGCCTTTCTCCACGAGCCCTGCCCTCAAGGCCTTGACTGCACC
GATTTTAGATATTGCCAGAAAGGTCACCCACGAGCCTGGGAAGACAAGAG
GGAATGGGCCAAGCCCTGCCGTTTCTATCGGGCCGGTGGGTTCTGCATAC
GATTGGAACGCAAAGAATGTATGTACCAACATGTGATGTGCAGGGACGGG
AAGGACTGTCAGGAGGGAAGGTGTCAGTGGGGGCATCCATGGGAATGGCG
CTGTAAGGGTTGTGTCAAATGTGGGAGTGATGGAGGAAGATTGAAAAAAG
GGGAAGAGGGGTTGACAGGGGCAGGGGTTTTGCTGTTGTCGCCTTCTCAT
GAGGAAGGGAAGTATGACCTTGTGCTCGTTGAAGAGGAAAATTGGGATGC
GGACGGGGCAAGGGAGTGGGGAGAGATGGGCGGTCGGATCAGCAGTCTCG
GTAGAGACAAAGACGAAAACGAGGACGATGTTGGGGCGGTTGGAGGGAAT
GCCGTGGGGAGGGAGGAAGCACCTGTTGTGGCAGCACGCGAACTCTTGGA
GGAGACGGCAGGCACCGTGCAAGTCAGTGTCACTACAATCGGTGCTTGTC
CCTACGTGGATGTCGGTTTATTCCATCGGTATCGCTGCTATTTGCTCGTC
TTGGATAAGGCGGAGGTGAGTGTCGGAGTGTACCAACAAGCACGAAAGAA
TGCGGGGTTGCCTCGCAGCTGGAGGGAGACGTTGGACATGAGGCGATTTC
CATTGGACAGGGTTGGGGAGGAGATGAGGATGAAGAAGGGGAAGAGGAGG
GGGGCCACCAGGGAGGGCGAGGGTTACAAATCGGGAGCAGGGCAAAAGAA
GAGGAAGAGAGATGAGCGGGGCGGGGGCGAGGTGGACCAGGAGGGGGAGG
TGGCGGGGGATGAGGAGGAGGAGGAGGAGGAGGAGGGAATGGAAGGAGGA
GGGGAAGGACATGGAAATAAAAAGGTGAAGGACAAGGGCAAGGGCGAGAA
AATGGATGTGGAGGAGAAGGAGGAGGAGGAGGTTGGGGGGGGGGGGGGGG
CATTCGGTGTTGATGAACGATCTCATCTACAGTCACAAAGGCAGGGGTCA
TGCGTTGGCAGAGCGGGTGCGGCAAGTGCTGAGTGAAATGTTTCGTGCAG
GATGGCTAGACCCTTACTTCTCTTCATCTGCATCTCCACCTGCAGGCGCT
GCTGACGCTCCCTCGCCGCCAACATCGATGGTGGCAAAACGAGGGTGGGG
AGGAAGACGTGGGGAAGTGAGGGGGAGAAGAGGAGGAGGACGAGGAGGAG
GAAATTGAGTTCCTGCGGACGAAATGGTCAC

Coding sequence (CDS) from alignment at scaffold_27:13993..15723-

>mRNA_8628 ID=mRNA_8628|Name=jgi.p|Nanoce1779_2|633049|organism=Nannochloropsis oceanica|type=CDS|length=1425bp|location=Sequence derived from alignment at scaffold_27:13993..15723- (Nannochloropsis oceanica)
ATGTCAAGCTTGGCCATCACCACTGCCAGTAGCAGCAACGCAAGCAGCAG
CAACAGAAGCAACAACAACAACAACAACGACAACAACAACAACAATCGCA
CCACCAATTGCAGGGGCGATTATGAGAGCGGGATCGAGGGCCGAGACGAG
GTATCCTCCTCATCCGTTCCTGATCCTCTACCACCACCATTACTATCATC
ATCATCTTCACCACCAAACCCGCCAGCCGCGCACAAGCGGCGTTATTGTT
CCTTTTTTCGGTATGGTCGCTGCACTCGCCTGTTTCCCTCCACCTGTGCC
TTTCTCCACGAGCCCTGCCCTCAAGGCCTTGACTGCACCGATTTTAGATA
TTGCCAGAAAGGTCACCCACGAGCCTGGGAAGACAAGAGGGAATGGGCCA
AGCCCTGCCGTTTCTATCGGGCCGGTGGGTTCTGCATACGATTGGAACGC
AAAGAATGTATGTACCAACATGTGATGTGCAGGGACGGGAAGGACTGTCA
GGAGGGAAGGTGTCAGTGGGGGCATCCATGGGAATGGCGCTGTAAGGGTT
GTGTCAAATGTGGGAGTGATGGAGGAAGATTGAAAAAAGGGGAAGAGGGG
TTGACAGGGGCAGGGGTTTTGCTGTTGTCGCCTTCTCATGAGGAAGGGAA
GTATGACCTTGTGCTCGTTGAAGAGGAAAATTGGGATGCGGACGGGGCAA
GGGAGTGGGGAGAGATGGGCGGTCGGATCAGCAGTCTCGGTAGAGACAAA
GACGAAAACGAGGACGATGTTGGGGCGGTTGGAGGGAATGCCGTGGGGAG
GGAGGAAGCACCTGTTGTGGCAGCACGCGAACTCTTGGAGGAGACGGCAG
GCACCGTGCAAGTCAGTGTCACTACAATCGGTGCTTGTCCCTACGTGGAT
GTCGGTTTATTCCATCGGTATCGCTGCTATTTGCTCGTCTTGGATAAGGC
GGAGGTGAGTGTCGGAGTGTACCAACAAGCACGAAAGAATGCGGGGTTGC
CTCGCAGCTGGAGGGAGACGTTGGACATGAGGCGATTTCCATTGGACAGG
GTTGGGGAGGAGATGAGGATGAAGAAGGGGAAGAGGAGGGGGGCCACCAG
GGAGGGCGAGGGTTACAAATCGGGAGCAGGGCAAAAGAAGAGGAAGAGAG
ATGAGCGGGGCGGGGGCGAGGTGGACCAGGAGGGGGAGGTGGCGGGGGAT
GAGGAGGAGGAGGAGGAGGAGGAGGGAATGGAAGGAGGAGGGGAAGGACA
TGGAAATAAAAAGGTGAAGGACAAGGGCAAGGGCGAGAAAATGGATGTGG
AGGAGAAGGAGGAGGAGGAGGTTGGGGGGGGGGGGGGGGCATTCGGTGTT
GATGAACGATCTCATCTACAGTCACAAAGGCAGGGGTCATGCGTTGGCAG
AGCGGGTGCGGCAAGTGCTGAGTGA

Synonyms

Publications