jgi.p|Nanoce1779_2|603390, mRNA_8625 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|603390
Unique NamemRNA_8625
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length857
Alignment locationscaffold_27:6139..7311 +

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Properties
Property NameValue
TranscriptId603476
TrackFilteredModels2
ProteinId603390
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_27supercontigscaffold_27:6139..7311 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|603390gene_8625Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|603390mRNA_8625-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_8625CDS_8625Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_8625 ID=mRNA_8625|Name=jgi.p|Nanoce1779_2|603390|organism=Nannochloropsis oceanica|type=mRNA|length=857bp
ACAGAACTTCTGAAGGCGTCATGCCCGTCAATCTCCTCGCGGTGCTCAAC
GAGCCCAATGCACCCCTTCAAGCCACGGCCGCCGCGACGCTGGCCTTACT
GGTCAAGCACATTGTCACCGTGTTTGCACAGGGAGGCGCGCGCTTCGGGG
CGGGGATGCGCCCGCCTGAAGACGTGTGTTTTATGCCCCAAGCCGGGACG
CAGTCTTTCGATGGTACTGCCAAGACGGCAGAAAAAGGGAATGAGGATAA
AGGTTTGAAGAAGGCAAAGGAGATTGAGCAACGCTGGACGCGTATCGTCG
CGAATGATTTGGAGAACATTCCGCTGGGTTTGATCATTGCTTGGGGCGCA
CTTCAATCTCCCCTCTCCGCTTCTGCGCATATCGTCCTCGTCTTCTCCTT
CGCCGTTTCCCGAGTCCTGCATACCGTGACATATGCAATGGGAAAGCAAC
CTCATCGTGCCATCACGTTTTTTGGGGGGCTCTTATCGGTGGTGGGACTG
AGCATCAATGGTTTGCTAGGCGCGCTGGGGAAGAAGTAGGAGAATAGATT
CTCCCTCCCTTGCTCCCTCCCTCTCTCGCTCCCTTGCTTTCTCCCTTCCT
TATTTCTTACTTTCTTTTCTCAGATTAAGGCAGGACGACAATGAATGAAT
ACGTTCGAAAAGAAAGGAAAAAGCGAAGCGAAGTGAGCGGCCTCTCGGTA
ACACGCGTATCCCCATCTTTGCTAATTTCGCTTTCCCTATTCCTGTGTGG
GTACATTGACTGGTTCTTACACCGCTGAATAAAGAAAGGGGCGAGGGATG
AACGGAGCAAGGAAGAAGAGGAAAGGAGAGAATTAGAAAAAAGAGATAAA
GTGATGA
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protein sequence of jgi.p|Nanoce1779_2|603390

>mRNA_8625-protein ID=mRNA_8625-protein|Name=jgi.p|Nanoce1779_2|603390|organism=Nannochloropsis oceanica|type=polypeptide|length=173bp
MPVNLLAVLNEPNAPLQATAAATLALLVKHIVTVFAQGGARFGAGMRPPE
DVCFMPQAGTQSFDGTAKTAEKGNEDKGLKKAKEIEQRWTRIVANDLENI
PLGLIIAWGALQSPLSASAHIVLVFSFAVSRVLHTVTYAMGKQPHRAITF
FGGLLSVVGLSINGLLGALGKK*
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mRNA from alignment at scaffold_27:6139..7311+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_8625 ID=mRNA_8625|Name=jgi.p|Nanoce1779_2|603390|organism=Nannochloropsis oceanica|type=mRNA|length=1173bp|location=Sequence derived from alignment at scaffold_27:6139..7311+ (Nannochloropsis oceanica)
ACAGAACTTCTGAAGGCGTCATGCCCGTCAATCTCCTCGCGGTGCTCAAC
GAGCCCAATGCACCCCTTCAAGCCACGGCCGCCGCGACGCTGGCCTTACT
GGTCAAGCACATTGTCACCGTGTTTGCACAGGGAGGCGCGCGCTTCGGGG
CGGGGATGCGCCCGCCTGAAGACGTGTGTTTTATGCCCCAAGCCGGGACG
CAGTCTTTCGATGGTACTGCCAAGACGGCAGAAAAAGGGAATGAGGATAA
AGGTTTGAAGAAGGCAAAGGAGATTGAGCAACGCTGGACGCGTATCGTCG
CGAATGATTTGGAGAACATTCCGCTGGTACGTCTTTTCCCCCTCCATCGT
CTCCTTCGCCTGCTTTCCTTTTACGCTCATCTAGTACGTCCCGATCCCGA
TGATCATACAGAAAAATTAATTGGCATGCTATCATCTGCACAAACTTATA
TTTTCTCCCTTCTTTGTCTTTGTTTGGGGCTTTTCCCTCCCTCATCCCCT
CCTTTCCATCCTCTCTCGTTGAATGGGCCTGTTCATTGCTCTAGCCCCTC
CTCTCCACTCCTATGAACATTAACCTTGTCTTTCTTTTCGTCACGCTCCT
TTTTTTCATACTCTTATTCTCCCCCTCCCCCTTCTGCCTTAGGGTTTGAT
CATTGCTTGGGGCGCACTTCAATCTCCCCTCTCCGCTTCTGCGCATATCG
TCCTCGTCTTCTCCTTCGCCGTTTCCCGAGTCCTGCATACCGTGACATAT
GCAATGGGAAAGCAACCTCATCGTGCCATCACGTTTTTTGGGGGGCTCTT
ATCGGTGGTGGGACTGAGCATCAATGGTTTGCTAGGCGCGCTGGGGAAGA
AGTAGGAGAATAGATTCTCCCTCCCTTGCTCCCTCCCTCTCTCGCTCCCT
TGCTTTCTCCCTTCCTTATTTCTTACTTTCTTTTCTCAGATTAAGGCAGG
ACGACAATGAATGAATACGTTCGAAAAGAAAGGAAAAAGCGAAGCGAAGT
GAGCGGCCTCTCGGTAACACGCGTATCCCCATCTTTGCTAATTTCGCTTT
CCCTATTCCTGTGTGGGTACATTGACTGGTTCTTACACCGCTGAATAAAG
AAAGGGGCGAGGGATGAACGGAGCAAGGAAGAAGAGGAAAGGAGAGAATT
AGAAAAAAGAGATAAAGTGATGA
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Coding sequence (CDS) from alignment at scaffold_27:6139..7311+

>mRNA_8625 ID=mRNA_8625|Name=jgi.p|Nanoce1779_2|603390|organism=Nannochloropsis oceanica|type=CDS|length=1038bp|location=Sequence derived from alignment at scaffold_27:6139..7311+ (Nannochloropsis oceanica)
ATGCCCGTCAATCTCCTCGCGGTGCTCAACGAGCCCAATGCACCCCTTCA
AGCCACGGCCGCCGCGACGCTGGCCTTACTGGTCAAGCACATTGTCACCG
TGTTTGCACAGGGAGGCGCGCGCTTCGGGGCGGGGATGCGCCCGCCTGAA
GACGTGTGTTTTATGCCCCAAGCCGGGACGCAGTCTTTCGATGGTACTGC
CAAGACGGCAGAAAAAGGGAATGAGGATAAAGGTTTGAAGAAGGCAAAGG
AGATTGAGCAACGCTGGACGCGTATCGTCGCGAATGATTTGGAGAACATT
CCGCTGGGTTTGATCATTGCTTGGGGCGCACTTCAATCTCCCCTCTCCGC
TTCTGCGCATATCGTCCTCGTCTTCTCCTTCGCCGTTTCCCGAGTCCTGC
ATACCGTGACATATGCAATGGGAAAGCAACCTCATCGTGCCATCACGTTT
TTTGGGGGGCTCTTATCGGTGGTGGGACTGAGCATCAATGGTTTGCTAGG
CGCGCTGGGGAAGAAGTAGATGCCCGTCAATCTCCTCGCGGTGCTCAACG
AGCCCAATGCACCCCTTCAAGCCACGGCCGCCGCGACGCTGGCCTTACTG
GTCAAGCACATTGTCACCGTGTTTGCACAGGGAGGCGCGCGCTTCGGGGC
GGGGATGCGCCCGCCTGAAGACGTGTGTTTTATGCCCCAAGCCGGGACGC
AGTCTTTCGATGGTACTGCCAAGACGGCAGAAAAAGGGAATGAGGATAAA
GGTTTGAAGAAGGCAAAGGAGATTGAGCAACGCTGGACGCGTATCGTCGC
GAATGATTTGGAGAACATTCCGCTGGGTTTGATCATTGCTTGGGGCGCAC
TTCAATCTCCCCTCTCCGCTTCTGCGCATATCGTCCTCGTCTTCTCCTTC
GCCGTTTCCCGAGTCCTGCATACCGTGACATATGCAATGGGAAAGCAACC
TCATCGTGCCATCACGTTTTTTGGGGGGCTCTTATCGGTGGTGGGACTGA
GCATCAATGGTTTGCTAGGCGCGCTGGGGAAGAAGTAG
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Synonyms
Publications