jgi.p|Nanoce1779_2|603388, mRNA_8624 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|603388
Unique Name	mRNA_8624
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2077
Alignment location	scaffold_27:3037..5470 +

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Properties


Property Name	Value
TranscriptId	603474
Track	FilteredModels2
ProteinId	603388

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_27	supercontig	scaffold_27:3037..5470 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|603388	gene_8624	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|603388	mRNA_8624-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_8624	CDS_8624	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_27:3037..5470+
coding sequence from alignment at scaffold_27:3037..5470+

mRNA sequence

>mRNA_8624 ID=mRNA_8624|Name=jgi.p|Nanoce1779_2|603388|organism=Nannochloropsis oceanica|type=mRNA|length=2077bp
CCTCCTCTTCCTCCTCCTCCTCCAATCCTTTTTCCCATCTTTCCTCCGAT
TCTCCCCTGGGCGAGTTGGCAGCGACCCACATTCTTGCAATGGCAGCCCC
CAACAGCAGCAGCAGCAGCAACAACAACAACAGCAACAACACCACCACCG
CCACCATCACTACCAGTAGCAGTACAAGCCTTCCTCCCGTCATGCCTGTG
CTTGACGCGCTGGCGGACGATACCTTCTTGTATTTATTCTTCCCCTACGC
GTCAGGAGGGGATCTCTTCGACGCTCTGGCAGGGACGACGGAAGGGATGG
AGGAAGAGGTCGCTAGGTCTTATTTTACGGATGTTGTACAGGGGTTACAA
TTTTTAAAAATAAACGGCATGACGCATGGAGATGTGAGCTTGGAAAACGT
GGTGGTGTGTGAGGAGGAGGAGGATAAGGATAAGAAGAAGATGTGGGCGA
AAGGGAGGGGAGGGCGCGGCAGGGTGATTGAGTTCTATAGCACTGAGCAC
GGATTGGTGCGCCGGCAGCAGCGCGCCGAGTTGATTGAGTGGATGTTAAG
TCCACGCCCAGAGGAAAGGCCGACACTAGAGCAGGTTTTGGAGCATGCTT
GGGTTAAGGGAGAAGGGAGGGGGTCGACGGGTGGTGGAGGAGGAGGAGGA
GGAGGAAGGACGAGATATGTTCAGCCGTCGTCGCCGGTTGCATGGGTCGG
GGTAGAGGAAGATTCGGCGGTGATTTTGGGGTCACCGGATACGAGTTTTG
GGAGTATTGACAGTGTTCATAGCACTTATAGTGCTGGTGGGGAGGGTGAA
AGTAGAAATACCTCTGACGGCGATGAGGAAAAGGGAGAAAAGGGACTCTC
AGGGCAATAACTGCAGTAAGAGCAGCCGCAGTAGCATTGGCCTAATTCTA
TACTGCAAGTAAGGTTTCCAAAGGCGAACAGGAGGGAAGGAAGGAAGGAC
GTCCTCAATCTCCCTTGAAATAGAGGAGACGAAAATGACGACCTGTTTTC
TCCTTTCTCCTGCCATCTTTTCCATCCATCTTTCCCTGCGTCTTACTCTC
ATTTCGTGACCCGGGATTATTACTTGATTCGGAAAAGAAATTAACGACCC
GAGCAATCGAGATGATTAGAAGGTAGGTGCTGAATGGCAGAATAACGAAA
ACGAAGACATAAACGAACAAAAGGTTGAAAAGAGAATTTGCATCCATGTA
TTGTATGATTGAGAGCACGTACAGAAAGATATAGTAGTCAGGAAGAGCAA
GATGAGCAAGGGTTTATAGGGGGTCTTCTCAGACAGGTTTATTGGGGAAC
CCCCCCGAGATATCTATGAGTATGTAATTATGAGGAGCTAGAGGGAGTAC
CATTGGAGAGGGTCAGTGAGAAAAGGGAGGGTCGAATTCGATCAAGTATC
GTATGATCGCCGTTTAGACAAATGCGTGGTTTAATACAATCGTATCGTGT
GGGCACGGCACAAACAATGTATTGTGAACCCGAAAGCGAGAGCTAGAACA
AGTGAAAAATTGTATGAGGACATGGAAGAAAACTCCTAAACACATTGCAC
GTGTGTATCTGTCGAATCGTAGAAGAAATAAGAAATGCACTCGGGAAACA
CGAATAGACATGTGCCAGGAAGCAAAGAAATGGGGTTGAAAAAGGGCGTG
ATTGCTGCTCCTTGGGTGAGGTTTTACCGAGTGTGACATGGCCGCTAGCC
CACCCTCCTCCTTCCAACCTCATTCGATCCTGCCAAAAAGATACAGCCCT
GTAGACAAAGGACACTAAAGAGGGAAAAGGAGGAAAGTTAGAGGGACAAG
AGGGAGGACAAAGATGTGTACGACACCATTTCGGCACAGGCAATGGATGT
AAGTATGAACAGTAAAAACAAGAAGGGAATCCGAGCAAGATGTCTTTCGT
CTAAGTGGTGGATGGGATCGCCCTGGGATAAGTTGAAGTGACAATCGCTA
GGAAAAACCACGACCATCCCTAGCCTTAATCTCCCCTTACCCGCTGTCCG
CTTCATCCATGACAAGAGCAAGAACAAGAATAAGAACGACAACGAGTAAA
AAAAAAGAAACAAGTAATGACATGGGC

protein sequence of jgi.p|Nanoce1779_2|603388

>mRNA_8624-protein ID=mRNA_8624-protein|Name=jgi.p|Nanoce1779_2|603388|organism=Nannochloropsis oceanica|type=polypeptide|length=257bp
MAAPNSSSSSNNNNSNNTTTATITTSSSTSLPPVMPVLDALADDTFLYLF
FPYASGGDLFDALAGTTEGMEEEVARSYFTDVVQGLQFLKINGMTHGDVS
LENVVVCEEEEDKDKKKMWAKGRGGRGRVIEFYSTEHGLVRRQQRAELIE
WMLSPRPEERPTLEQVLEHAWVKGEGRGSTGGGGGGGGGRTRYVQPSSPV
AWVGVEEDSAVILGSPDTSFGSIDSVHSTYSAGGEGESRNTSDGDEEKGE
KGLSGQ*

mRNA from alignment at scaffold_27:3037..5470+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_8624 ID=mRNA_8624|Name=jgi.p|Nanoce1779_2|603388|organism=Nannochloropsis oceanica|type=mRNA|length=2434bp|location=Sequence derived from alignment at scaffold_27:3037..5470+ (Nannochloropsis oceanica)
CCTCCTCTTCCTCCTCCTCCTCCAATCCTTTTTCCCATCTTTCCTCCGAT
TCTCCCCTGGGCGAGTTGGCAGCGACCCACATTCTTGCAATGGCAGCCCC
CAACAGCAGCAGCAGCAGCAACAACAACAACAGCAACAACACCACCACCG
CCACCATCACTACCAGTAGCAGTACAAGCCTTCCTCCCGTCATGCCTGTG
CTTGACGCGCTGGCGGACGATACCTTCTTGTATTTATTCTTCCCCTACGC
GTCAGGAGGGGATCTCTTCGACGCTCTGGCAGGGACGACGGAAGGGATGG
AGGAAGAGGTCGCTAGGTCTTATTTTACGGATGTTGTACAGGGGTTACAA
TTTTTAAAAATAAACGGCATGACGCATGGAGATGTGAGCTTGGAAAACGT
GGTGGTGTGTGAGGAGGAGGAGGATAAGGATAAGAAGAAGATGTGGGCGA
AAGGGAGTAATGGAAATGGGGAGGAGGAAGAGGAGCGACAGAAAGGAACA
AAAGCGAGAAATGTGGGAAAAAGGTCTGTCGGTTGATTGATTTGGAAATG
GCACGGTTTTGGCCCGAGGAAGAAATGCGGGCGGTGCATTGGAGGTCAAG
GACAGGACTAAGGAGCGTGGATGGAAAAAGGGGTATATGCCGCCGGAGTG
TGTAAATGGAACGGTGCTTGATTGGTTGGCGGCGGATATTTGGTCCCTGG
GAATATGTTCTTTACATGATGCTGACGCGGCACCCGCTGTACCTCGATCC
GGGGGAAGTGGTATTTGCGCTCCTTTGTCAGGGGGAGGGCGCGGCAGGGT
GATTGAGTTCTATAGCACTGAGCACGGATTGGTGCGCCGGCAGCAGCGCG
CCGAGTTGATTGAGTGGATGTTAAGTCCACGCCCAGAGGAAAGGCCGACA
CTAGAGCAGGTTTTGGAGCATGCTTGGGTTAAGGGAGAAGGGAGGGGGTC
GACGGGTGGTGGAGGAGGAGGAGGAGGAGGAAGGACGAGATATGTTCAGC
CGTCGTCGCCGGTTGCATGGGTCGGGGTAGAGGAAGATTCGGCGGTGATT
TTGGGGTCACCGGATACGAGTTTTGGGAGTATTGACAGTGTTCATAGCAC
TTATAGTGCTGGTGGGGAGGGTGAAAGTAGAAATACCTCTGACGGCGATG
AGGTGTGGGGATTTTATCAGATCTGCCCCGGCAGGAAAAGGGAGAAAAGG
GACTCTCAGGGCAATAACTGCAGTAAGAGCAGCCGCAGTAGCATTGGCCT
AATTCTATACTGCAAGTAAGGTTTCCAAAGGCGAACAGGAGGGAAGGAAG
GAAGGACGTCCTCAATCTCCCTTGAAATAGAGGAGACGAAAATGACGACC
TGTTTTCTCCTTTCTCCTGCCATCTTTTCCATCCATCTTTCCCTGCGTCT
TACTCTCATTTCGTGACCCGGGATTATTACTTGATTCGGAAAAGAAATTA
ACGACCCGAGCAATCGAGATGATTAGAAGGTAGGTGCTGAATGGCAGAAT
AACGAAAACGAAGACATAAACGAACAAAAGGTTGAAAAGAGAATTTGCAT
CCATGTATTGTATGATTGAGAGCACGTACAGAAAGATATAGTAGTCAGGA
AGAGCAAGATGAGCAAGGGTTTATAGGGGGTCTTCTCAGACAGGTTTATT
GGGGAACCCCCCCGAGATATCTATGAGTATGTAATTATGAGGAGCTAGAG
GGAGTACCATTGGAGAGGGTCAGTGAGAAAAGGGAGGGTCGAATTCGATC
AAGTATCGTATGATCGCCGTTTAGACAAATGCGTGGTTTAATACAATCGT
ATCGTGTGGGCACGGCACAAACAATGTATTGTGAACCCGAAAGCGAGAGC
TAGAACAAGTGAAAAATTGTATGAGGACATGGAAGAAAACTCCTAAACAC
ATTGCACGTGTGTATCTGTCGAATCGTAGAAGAAATAAGAAATGCACTCG
GGAAACACGAATAGACATGTGCCAGGAAGCAAAGAAATGGGGTTGAAAAA
GGGCGTGATTGCTGCTCCTTGGGTGAGGTTTTACCGAGTGTGACATGGCC
GCTAGCCCACCCTCCTCCTTCCAACCTCATTCGATCCTGCCAAAAAGATA
CAGCCCTGTAGACAAAGGACACTAAAGAGGGAAAAGGAGGAAAGTTAGAG
GGACAAGAGGGAGGACAAAGATGTGTACGACACCATTTCGGCACAGGCAA
TGGATGTAAGTATGAACAGTAAAAACAAGAAGGGAATCCGAGCAAGATGT
CTTTCGTCTAAGTGGTGGATGGGATCGCCCTGGGATAAGTTGAAGTGACA
ATCGCTAGGAAAAACCACGACCATCCCTAGCCTTAATCTCCCCTTACCCG
CTGTCCGCTTCATCCATGACAAGAGCAAGAACAAGAATAAGAACGACAAC
GAGTAAAAAAAAAGAAACAAGTAATGACATGGGC

Coding sequence (CDS) from alignment at scaffold_27:3037..5470+

>mRNA_8624 ID=mRNA_8624|Name=jgi.p|Nanoce1779_2|603388|organism=Nannochloropsis oceanica|type=CDS|length=2313bp|location=Sequence derived from alignment at scaffold_27:3037..5470+ (Nannochloropsis oceanica)
ATGGCAGCCCCCAACAGCAGCAGCAGCAGCAACAACAACAACAGCAACAA
CACCACCACCGCCACCATCACTACCAGTAGCAGTACAAGCCTTCCTCCCG
TCATGCCTGTGCTTGACGCGCTGGCGGACGATACCTTCTTGTATTTATTC
TTCCCCTACGCGTCAGGAGGGGATCTCTTCGACGCTCTGGCAGGGACGAC
GGAAGGGATGGAGGAAGAGGTCGCTAGGTCTTATTTTACGGATGTTGTAC
AGGGGTTACAATTTTTAAAAATAAACGGCATGACGCATGGAGATGTGAGC
TTGGAAAACGTGGTGGTGTGTGAGGAGGAGGAGGATAAGGATAAGAAGAA
GATGTGGGCGAAAGGGAGGGGAGGGCGCGGCAGGGTGATTGAGTTCTATA
GCACTGAGCACGGATTGGTGCGCCGGCAGCAGCGCGCCGAGTTGATTGAG
TGGATGTTAAGTCCACGCCCAGAGGAAAGGCCGACACTAGAGCAGGTTTT
GGAGCATGCTTGGGTTAAGGGAGAAGGGAGGGGGTCGACGGGTGGTGGAG
GAGGAGGAGGAGGAGGAAGGACGAGATATGTTCAGCCGTCGTCGCCGGTT
GCATGGGTCGGGGTAGAGGAAGATTCGGCGGTGATTTTGGGGTCACCGGA
TACGAGTTTTGGGAGTATTGACAGTGTTCATAGCACTTATAGTGCTGGTG
GGGAGGGTGAAAGTAGAAATACCTCTGACGGCGATGAGGAAAAGGGAGAA
AAGGGACTCTCAGGGCAATAAATGGCAGCCCCCAACAGCAGCAGCAGCAG
CAACAACAACAACAGCAACAACACCACCACCGCCACCATCACTACCAGTA
GCAGTACAAGCCTTCCTCCCGTCATGCCTGTGCTTGACGCGCTGGCGGAC
GATACCTTCTTGTATTTATTCTTCCCCTACGCGTCAGGAGGGGATCTCTT
CGACGCTCTGGCAGGGACGACGGAAGGGATGGAGGAAGAGGTCGCTAGGT
CTTATTTTACGGATGTTGTACAGGGGTTACAATTTTTAAAAATAAACGGC
ATGACGCATGGAGATGTGAGCTTGGAAAACGTGGTGGTGTGTGAGGAGGA
GGAGGATAAGGATAAGAAGAAGATGTGGGCGAAAGGGAGGGGAGGGCGCG
GCAGGGTGATTGAGTTCTATAGCACTGAGCACGGATTGGTGCGCCGGCAG
CAGCGCGCCGAGTTGATTGAGTGGATGTTAAGTCCACGCCCAGAGGAAAG
GCCGACACTAGAGCAGGTTTTGGAGCATGCTTGGGTTAAGGGAGAAGGGA
GGGGGTCGACGGGTGGTGGAGGAGGAGGAGGAGGAGGAAGGACGAGATAT
GTTCAGCCGTCGTCGCCGGTTGCATGGGTCGGGGTAGAGGAAGATTCGGC
GGTGATTTTGGGGTCACCGGATACGAGTTTTGGGAGTATTGACAGTGTTC
ATAGCACTTATAGTGCTGGTGGGGAGGGTGAAAGTAGAAATACCTCTGAC
GGCGATGAGGAAAAGGGAGAAAAGGGACTCTCAGGGCAATAAATGGCAGC
CCCCAACAGCAGCAGCAGCAGCAACAACAACAACAGCAACAACACCACCA
CCGCCACCATCACTACCAGTAGCAGTACAAGCCTTCCTCCCGTCATGCCT
GTGCTTGACGCGCTGGCGGACGATACCTTCTTGTATTTATTCTTCCCCTA
CGCGTCAGGAGGGGATCTCTTCGACGCTCTGGCAGGGACGACGGAAGGGA
TGGAGGAAGAGGTCGCTAGGTCTTATTTTACGGATGTTGTACAGGGGTTA
CAATTTTTAAAAATAAACGGCATGACGCATGGAGATGTGAGCTTGGAAAA
CGTGGTGGTGTGTGAGGAGGAGGAGGATAAGGATAAGAAGAAGATGTGGG
CGAAAGGGAGGGGAGGGCGCGGCAGGGTGATTGAGTTCTATAGCACTGAG
CACGGATTGGTGCGCCGGCAGCAGCGCGCCGAGTTGATTGAGTGGATGTT
AAGTCCACGCCCAGAGGAAAGGCCGACACTAGAGCAGGTTTTGGAGCATG
CTTGGGTTAAGGGAGAAGGGAGGGGGTCGACGGGTGGTGGAGGAGGAGGA
GGAGGAGGAAGGACGAGATATGTTCAGCCGTCGTCGCCGGTTGCATGGGT
CGGGGTAGAGGAAGATTCGGCGGTGATTTTGGGGTCACCGGATACGAGTT
TTGGGAGTATTGACAGTGTTCATAGCACTTATAGTGCTGGTGGGGAGGGT
GAAAGTAGAAATACCTCTGACGGCGATGAGGAAAAGGGAGAAAAGGGACT
CTCAGGGCAATAA

Synonyms

Publications