jgi.p|Nanoce1779_2|603381, mRNA_8623 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|603381
Unique NamemRNA_8623
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length884
Alignment locationscaffold_26:383513..384396 -

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Properties
Property NameValue
TranscriptId603467
TrackFilteredModels2
ProteinId603381
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_26supercontigscaffold_26:383513..384396 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|603381gene_8623Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|603381mRNA_8623-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_8623CDS_8623Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_8623 ID=mRNA_8623|Name=jgi.p|Nanoce1779_2|603381|organism=Nannochloropsis oceanica|type=mRNA|length=884bp
ACAGAAAGATGATTGCCTGTATTACTGTGGTAGGCAAGAGGAACGAACTC
CTCTACCTGCAGACCTTTCTTCCTCCGACTGACCCCAACGGAAGTTATTA
CGACCCCCTCCGCTTCCATTTTCTCGCCCACAGTGCCCTCGACGCTTTCG
ATGAACGCAGTGCAGGCAAGTCCAGTCGGCCTCCCACTTCCTCTGCCTCG
TTCACCGGCGCAAATACGGCGAACGACATGTTCCTGGGCCACCTCTGTCC
AATAGAAGAATTTCGTGTATACGGGTACCAAACCAGCACCCATTTGAAGC
TCATTGCCATCCTTACCGAGAACGAGCCTGTCCGTGAAAATGACTTGAAA
AACGTCCTTCAAGGCTTGCATACATTGTACGTCAGCTATTTGCAATCCCC
CTTCTCGCCTTTGTCTGGGAAAATTACCTCGGCGCGCTTTGCGAAGGGGG
TGGAAAGGCAGGTGTCAGTGTACAATCAGAGCACTAGCAACAGTAGTAGC
AGTAGTGGTGGTGGTGGGATTGGAAGTGGGCTAGCAGCTCTATCATCGTC
AAGGCTTTTGGCTTCTACTTCTTCAACGGGCACCTCTTCCTTTCCTCGTT
TTCCAACTTGACTTAATTTTCAGGAAGCAGCGAAAGAAGGAAAAAGCAAA
CTGATATGAAGAATACGACCCTACCAGACATAATCCTATTTTTGTAGATA
AATAATTTAGTCAAGTATTGCTTCTTCAATCGAATGTCCACGAAGTCGAC
GTTTTGGAAACCGGTTATCGGACCCATAACTCAACTATTCGAGTCCCCAA
AAAATGGTGACCATTTAGGGTGAGGCCCAGGCATTGGGCAATGGAGGGAG
AGGAAAGTATCAAGCAAGATTGAGATAGATGCCT
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protein sequence of jgi.p|Nanoce1779_2|603381

>mRNA_8623-protein ID=mRNA_8623-protein|Name=jgi.p|Nanoce1779_2|603381|organism=Nannochloropsis oceanica|type=polypeptide|length=201bp
MIACITVVGKRNELLYLQTFLPPTDPNGSYYDPLRFHFLAHSALDAFDER
SAGKSSRPPTSSASFTGANTANDMFLGHLCPIEEFRVYGYQTSTHLKLIA
ILTENEPVRENDLKNVLQGLHTLYVSYLQSPFSPLSGKITSARFAKGVER
QVSVYNQSTSNSSSSSGGGGIGSGLAALSSSRLLASTSSTGTSSFPRFPT
*
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mRNA from alignment at scaffold_26:383513..384396-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_8623 ID=mRNA_8623|Name=jgi.p|Nanoce1779_2|603381|organism=Nannochloropsis oceanica|type=mRNA|length=884bp|location=Sequence derived from alignment at scaffold_26:383513..384396- (Nannochloropsis oceanica)
ACAGAAAGATGATTGCCTGTATTACTGTGGTAGGCAAGAGGAACGAACTC
CTCTACCTGCAGACCTTTCTTCCTCCGACTGACCCCAACGGAAGTTATTA
CGACCCCCTCCGCTTCCATTTTCTCGCCCACAGTGCCCTCGACGCTTTCG
ATGAACGCAGTGCAGGCAAGTCCAGTCGGCCTCCCACTTCCTCTGCCTCG
TTCACCGGCGCAAATACGGCGAACGACATGTTCCTGGGCCACCTCTGTCC
AATAGAAGAATTTCGTGTATACGGGTACCAAACCAGCACCCATTTGAAGC
TCATTGCCATCCTTACCGAGAACGAGCCTGTCCGTGAAAATGACTTGAAA
AACGTCCTTCAAGGCTTGCATACATTGTACGTCAGCTATTTGCAATCCCC
CTTCTCGCCTTTGTCTGGGAAAATTACCTCGGCGCGCTTTGCGAAGGGGG
TGGAAAGGCAGGTGTCAGTGTACAATCAGAGCACTAGCAACAGTAGTAGC
AGTAGTGGTGGTGGTGGGATTGGAAGTGGGCTAGCAGCTCTATCATCGTC
AAGGCTTTTGGCTTCTACTTCTTCAACGGGCACCTCTTCCTTTCCTCGTT
TTCCAACTTGACTTAATTTTCAGGAAGCAGCGAAAGAAGGAAAAAGCAAA
CTGATATGAAGAATACGACCCTACCAGACATAATCCTATTTTTGTAGATA
AATAATTTAGTCAAGTATTGCTTCTTCAATCGAATGTCCACGAAGTCGAC
GTTTTGGAAACCGGTTATCGGACCCATAACTCAACTATTCGAGTCCCCAA
AAAATGGTGACCATTTAGGGTGAGGCCCAGGCATTGGGCAATGGAGGGAG
AGGAAAGTATCAAGCAAGATTGAGATAGATGCCT
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Coding sequence (CDS) from alignment at scaffold_26:383513..384396-

>mRNA_8623 ID=mRNA_8623|Name=jgi.p|Nanoce1779_2|603381|organism=Nannochloropsis oceanica|type=CDS|length=603bp|location=Sequence derived from alignment at scaffold_26:383513..384396- (Nannochloropsis oceanica)
ATGATTGCCTGTATTACTGTGGTAGGCAAGAGGAACGAACTCCTCTACCT
GCAGACCTTTCTTCCTCCGACTGACCCCAACGGAAGTTATTACGACCCCC
TCCGCTTCCATTTTCTCGCCCACAGTGCCCTCGACGCTTTCGATGAACGC
AGTGCAGGCAAGTCCAGTCGGCCTCCCACTTCCTCTGCCTCGTTCACCGG
CGCAAATACGGCGAACGACATGTTCCTGGGCCACCTCTGTCCAATAGAAG
AATTTCGTGTATACGGGTACCAAACCAGCACCCATTTGAAGCTCATTGCC
ATCCTTACCGAGAACGAGCCTGTCCGTGAAAATGACTTGAAAAACGTCCT
TCAAGGCTTGCATACATTGTACGTCAGCTATTTGCAATCCCCCTTCTCGC
CTTTGTCTGGGAAAATTACCTCGGCGCGCTTTGCGAAGGGGGTGGAAAGG
CAGGTGTCAGTGTACAATCAGAGCACTAGCAACAGTAGTAGCAGTAGTGG
TGGTGGTGGGATTGGAAGTGGGCTAGCAGCTCTATCATCGTCAAGGCTTT
TGGCTTCTACTTCTTCAACGGGCACCTCTTCCTTTCCTCGTTTTCCAACT
TGA
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Synonyms
Publications