jgi.p|Nanoce1779_2|603379, mRNA_8622 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|603379
Unique NamemRNA_8622
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1283
Alignment locationscaffold_26:381995..383512 +

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Properties
Property NameValue
TranscriptId603465
TrackFilteredModels2
ProteinId603379
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_26supercontigscaffold_26:381995..383512 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|603379gene_8622Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|603379mRNA_8622-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_8622CDS_8622Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_8622 ID=mRNA_8622|Name=jgi.p|Nanoce1779_2|603379|organism=Nannochloropsis oceanica|type=mRNA|length=1283bp
CCCCCCCCCCCCCCTCCCTTCTCCTCCTCTCCCTCTGCCCCCCCCTCCCC
CATCACCTGGTCCACCCTCGGCCCCCGGGCTCAAGGCAACCCTCAACACT
TCCCTCGCCCTCCGCCACCGCGTTGCCCACCACCTCGAGGCCCACGACCT
CGACCGGCCCAAAATGAACGAGTGGTTCGCCCTCTCCCTCCGAGCCGCCG
CCTACATCTTCTTCCTCTTCGGTCCCTCGCTGAAATCTGGTCGCGCCGGG
AGAGCATCCACGAAACGGCGACCTTGACGAAGAAAACACCGAGGAATTCC
TGGTGTATCTGTTTTGTTGAACCGGGGAAAGCGATCCTGGACGACTTGAT
ATTGAACAAAAGACAGCGGTTGACGGATGTGGGGGCAATTGCTGATGCGC
AGGCGAGTTTGCGGCGATGTTGAGTGATTTTATCGAGGACACGTATCCGA
AAATGAGCAAGGAGGCACGGAAAAAGGCGTTGGAAGCCATGGACATTGGC
CTCGTTTCCGAGCAGTACGACAAGGAGATCAGGCACGCTGTCCGCAACGT
GTTCAGTGGGAAGATTGTCCGAATGCTCTTGATCCAGATGCAGTACCTCC
TCGTGGCCATTGGAAGCGATCGACGACCTCTTCAACGCCAACAAAGTCAA
TCTCCAGCTCTTCGCAGTCATTCCTGCCTCTTCCTCACCTACTTTTTCTA
CCCAACCTCTCTGGTGTCCACGCCGCCCTCCGACGGACGCTCCGAGACCT
CGAACGTCTCCTCATCCTCGCGCCCCGCCTCCCTCCCTCCCTCCTCGCGC
TCCCCCTCCCTCTCTCCCTCCCTGGGGGGGATGGGACCCAAGGCAGCTGT
GTTGGATGAGAGGCGGTTAGGGGAGGTGGTGTTGTTGGTAGCCGAATTTC
AAAATATCTTAAGGGTGAACGCCCCGAGGCTTGAGACGAGTGTACGACGG
GCGTTGGAAGAAGATATGAGTGATGTGTTGGGAGGGCCGGGGAGACAGAC
GGTGGAGCAGCAGCTGACGTCATTGAGTCGCATCCGGAGAGGGTACGCGT
TCTTGCAGTCAAGGACAAGTGGAGGGGGGTCCGCGTTGTTCGAGCTGCTG
ACGTGAGGACGTGTGGAGGAGGGAGGGAGGGAACGGGGGAATAAGTGGGG
GTTTGGGAAGAAGAAATATGAAACAATTACGAACGATTTATACCCCAACA
TAGACAAAAAAGTCATAAGTAGAGTGCCCAGACGGGATAAAAGGAAAAAA
AATAAGATAGATAAAGACACAAAGAGCACATCT
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protein sequence of jgi.p|Nanoce1779_2|603379

>mRNA_8622-protein ID=mRNA_8622-protein|Name=jgi.p|Nanoce1779_2|603379|organism=Nannochloropsis oceanica|type=polypeptide|length=230bp
MLSDFIEDTYPKMSKEARKKALEAMDIGLVSEQYDKEIRHAVRNVFSGKI
VRMLLIQMQYLLVAIGSDRRPLQRQQSQSPALRSHSCLFLTYFFYPTSLV
STPPSDGRSETSNVSSSSRPASLPPSSRSPSLSPSLGGMGPKAAVLDERR
LGEVVLLVAEFQNILRVNAPRLETSVRRALEEDMSDVLGGPGRQTVEQQL
TSLSRIRRGYAFLQSRTSGGGSALFELLT*
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mRNA from alignment at scaffold_26:381995..383512+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_8622 ID=mRNA_8622|Name=jgi.p|Nanoce1779_2|603379|organism=Nannochloropsis oceanica|type=mRNA|length=1518bp|location=Sequence derived from alignment at scaffold_26:381995..383512+ (Nannochloropsis oceanica)
CCCCCCCCCCCCCCTCCCTTCTCCTCCTCTCCCTCTGCCCCCCCCTCCCC
CATCACCTGGTCCACCCTCGGCCCCCGGGCTCAAGGCAACCCTCAACACT
TCCCTCGCCCTCCGCCACCGCGTTGCCCACCACCTCGAGGCCCACGACCT
CGACCGGCCCAAAATGAACGAGTGGTTCGCCCTCTCCCTCCGAGCCGCCG
CCTACATCTTCTTCCTCTTCGGTCCCTCGCTGAAATCTGGTCGCGCCGGG
AGAGCATCCACGAAACGGCGACCTTGACGAAGAAAACACCGAGGAATTCC
TGGTGTATCTGTTTTGTTGAACCGGGGAAAGCGATCCTGGACGACTTGAT
ATTGAACAAAAGACAGCGGTTGACGGATGTGGGGGCAATTGCTGATGCGC
AGGCGAGTTTGCGGCGATGTTGAGTGATTTTATCGAGGACACGTATCCGA
AAATGAGCAAGGAGGCACGGAAAAAGGCGTTGGAAGCCATGGACATTGGC
CTCGTTTCCGAGCAGTACGACAAGGAGATCAGGCACGCTGTCCGCAACGT
GTTCAGTGGGAAGATTGTCCGAATGCTCTTGATCCAGATGCAGTACGTGA
AAAAAAGAGGTGCGTGCTACCCCTCCCTCCCTTTCTCTCTCTCTTCTCTC
TCCCTTACTCTTTCCCTTGTTCCCTTCCCTTACCACCCTCCTACCTTTCC
TCACCACCATTCACACCTCCCTCCCTCCCTCCCTCTCCCTCTCCCTCCCT
CTCTCCCTCCCTCCCTCTCTCCCTCCCTCCCGCAGCTCCTCGTGGCCATT
GGAAGCGATCGACGACCTCTTCAACGCCAACAAAGTCAATCTCCAGCTCT
TCGCAGTCATTCCTGCCTCTTCCTCACCTACTTTTTCTACCGTGCCGCCC
TCTACCTTCTGGGCGCCTTGGCCTCCCGCCGCATCAGCAACCTCTCTGGT
GTCCACGCCGCCCTCCGACGGACGCTCCGAGACCTCGAACGTCTCCTCAT
CCTCGCGCCCCGCCTCCCTCCCTCCCTCCTCGCGCTCCCCCTCCCTCTCT
CCCTCCCTGGGGGGGATGGGACCCAAGGCAGCTGTGTTGGATGAGAGGCG
GTTAGGGGAGGTGGTGTTGTTGGTAGCCGAATTTCAAAATATCTTAAGGG
TGAACGCCCCGAGGCTTGAGACGAGTGTACGACGGGCGTTGGAAGAAGAT
ATGAGTGATGTGTTGGGAGGGCCGGGGAGACAGACGGTGGAGCAGCAGCT
GACGTCATTGAGTCGCATCCGGAGAGGGTACGCGTTCTTGCAGTCAAGGA
CAAGTGGAGGGGGGTCCGCGTTGTTCGAGCTGCTGACGTGAGGACGTGTG
GAGGAGGGAGGGAGGGAACGGGGGAATAAGTGGGGGTTTGGGAAGAAGAA
ATATGAAACAATTACGAACGATTTATACCCCAACATAGACAAAAAAGTCA
TAAGTAGAGTGCCCAGACGGGATAAAAGGAAAAAAAATAAGATAGATAAA
GACACAAAGAGCACATCT
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Coding sequence (CDS) from alignment at scaffold_26:381995..383512+

>mRNA_8622 ID=mRNA_8622|Name=jgi.p|Nanoce1779_2|603379|organism=Nannochloropsis oceanica|type=CDS|length=2070bp|location=Sequence derived from alignment at scaffold_26:381995..383512+ (Nannochloropsis oceanica)
ATGTTGAGTGATTTTATCGAGGACACGTATCCGAAAATGAGCAAGGAGGC
ACGGAAAAAGGCGTTGGAAGCCATGGACATTGGCCTCGTTTCCGAGCAGT
ACGACAAGGAGATCAGGCACGCTGTCCGCAACGTGTTCAGTGGGAAGATT
GTCCGAATGCTCTTGATCCAGATGCAGTACCTCCTCGTGGCCATTGGAAG
CGATCGACGACCTCTTCAACGCCAACAAAGTCAATCTCCAGCTCTTCGCA
GTCATTCCTGCCTCTTCCTCACCTACTTTTTCTACCCAACCTCTCTGGTG
TCCACGCCGCCCTCCGACGGACGCTCCGAGACCTCGAACGTCTCCTCATC
CTCGCGCCCCGCCTCCCTCCCTCCCTCCTCGCGCTCCCCCTCCCTCTCTC
CCTCCCTGGGGGGGATGGGACCCAAGGCAGCTGTGTTGGATGAGAGGCGG
TTAGGGGAGGTGGTGTTGTTGGTAGCCGAATTTCAAAATATCTTAAGGGT
GAACGCCCCGAGGCTTGAGACGAGTGTACGACGGGCGTTGGAAGAAGATA
TGAGTGATGTGTTGGGAGGGCCGGGGAGACAGACGGTGGAGCAGCAGCTG
ACGTCATTGAGTCGCATCCGGAGAGGGTACGCGTTCTTGCAGTCAAGGAC
AAGTGGAGGGGGGTCCGCGTTGTTCGAGCTGCTGACGTGAATGTTGAGTG
ATTTTATCGAGGACACGTATCCGAAAATGAGCAAGGAGGCACGGAAAAAG
GCGTTGGAAGCCATGGACATTGGCCTCGTTTCCGAGCAGTACGACAAGGA
GATCAGGCACGCTGTCCGCAACGTGTTCAGTGGGAAGATTGTCCGAATGC
TCTTGATCCAGATGCAGTACCTCCTCGTGGCCATTGGAAGCGATCGACGA
CCTCTTCAACGCCAACAAAGTCAATCTCCAGCTCTTCGCAGTCATTCCTG
CCTCTTCCTCACCTACTTTTTCTACCCAACCTCTCTGGTGTCCACGCCGC
CCTCCGACGGACGCTCCGAGACCTCGAACGTCTCCTCATCCTCGCGCCCC
GCCTCCCTCCCTCCCTCCTCGCGCTCCCCCTCCCTCTCTCCCTCCCTGGG
GGGGATGGGACCCAAGGCAGCTGTGTTGGATGAGAGGCGGTTAGGGGAGG
TGGTGTTGTTGGTAGCCGAATTTCAAAATATCTTAAGGGTGAACGCCCCG
AGGCTTGAGACGAGTGTACGACGGGCGTTGGAAGAAGATATGAGTGATGT
GTTGGGAGGGCCGGGGAGACAGACGGTGGAGCAGCAGCTGACGTCATTGA
GTCGCATCCGGAGAGGGTACGCGTTCTTGCAGTCAAGGACAAGTGGAGGG
GGGTCCGCGTTGTTCGAGCTGCTGACGTGAATGTTGAGTGATTTTATCGA
GGACACGTATCCGAAAATGAGCAAGGAGGCACGGAAAAAGGCGTTGGAAG
CCATGGACATTGGCCTCGTTTCCGAGCAGTACGACAAGGAGATCAGGCAC
GCTGTCCGCAACGTGTTCAGTGGGAAGATTGTCCGAATGCTCTTGATCCA
GATGCAGTACCTCCTCGTGGCCATTGGAAGCGATCGACGACCTCTTCAAC
GCCAACAAAGTCAATCTCCAGCTCTTCGCAGTCATTCCTGCCTCTTCCTC
ACCTACTTTTTCTACCCAACCTCTCTGGTGTCCACGCCGCCCTCCGACGG
ACGCTCCGAGACCTCGAACGTCTCCTCATCCTCGCGCCCCGCCTCCCTCC
CTCCCTCCTCGCGCTCCCCCTCCCTCTCTCCCTCCCTGGGGGGGATGGGA
CCCAAGGCAGCTGTGTTGGATGAGAGGCGGTTAGGGGAGGTGGTGTTGTT
GGTAGCCGAATTTCAAAATATCTTAAGGGTGAACGCCCCGAGGCTTGAGA
CGAGTGTACGACGGGCGTTGGAAGAAGATATGAGTGATGTGTTGGGAGGG
CCGGGGAGACAGACGGTGGAGCAGCAGCTGACGTCATTGAGTCGCATCCG
GAGAGGGTACGCGTTCTTGCAGTCAAGGACAAGTGGAGGGGGGTCCGCGT
TGTTCGAGCTGCTGACGTGA
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Synonyms
Publications