jgi.p|Nanoce1779_2|656546, mRNA_8620 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|656546
Unique Name	mRNA_8620
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2633
Alignment location	scaffold_26:370385..373017 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	656632
Track	FilteredModels2
ProteinId	656546

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_26	supercontig	scaffold_26:370385..373017 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|656546	gene_8620	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|656546	mRNA_8620-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_8620	CDS_8620	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_26:370385..373017+
coding sequence from alignment at scaffold_26:370385..373017+

mRNA sequence

>mRNA_8620 ID=mRNA_8620|Name=jgi.p|Nanoce1779_2|656546|organism=Nannochloropsis oceanica|type=mRNA|length=2633bp
ATGCCAACCCTCCGGCAGCCTCTAGTCATCCAAAAGAATAACAACCAGTC
CTTTAATCAAGCCAATGCCAATTCTGGTGTCGTCGCCGCTGCAGCTGAGA
CCACCAAGAAGACAACGCACCAAGCATTGACACGGCGGAGAGTGACGCTT
TGTACCGTGGACAGTCGATATGACATTATTACAGAAGCAGCCAAGACATG
TGGCATGCGTGTGGTGGGTCACAACGACGATGGCTGCAATATCTACTGGC
TGGATATCTCCACCATTTCCGAACGCTTTAGCCGCCTCGAGCCCTGGCAG
CGTATCAACCACTTTCCCGGTATGAGCCATATTTCCCGCAAGAATCGCCT
GGCACAAAATCTGGGCAAGATGCGGCGTCACTTTCCGAAGGAATACGCGT
TTTACCCCAAGACATGGTCCTTGCCACAGGAAGCCGAGGACTTTTGGGCG
CAGTTCTGTCCCGAGGGTCGGGCAGCCCGGGGCATAACGTTCATCCTCAA
ACCTGAAAATAGCTCCAAAGGTCGAGGCATTTTTCTGACCAAGTCGCTAG
ATGCCATCTCCTTGACGGAGCCTCAGGTGGCGCAGGTTTACATCCATCGA
CCTTTGTTGATGGAGGGCTTCAAGTTCGACATCCGTATGTACACCCTCGT
CACAAGCTGCCAGCCATTGCGCCTCTACAAGTACAGCGACGGCTTAGTGC
GCCTTTGCACAACCGAGTATATGCAGCCCAATGCGGCCAACATGGGCGAT
CGGTACATGCATCTCACTAACAGTGCCATCAATCGCTTCTCTGAAAACTA
TTCCGTTAGGGGAGGGGCGGGGATAGAGAACGAGGATGAAACCGGAAGCA
AGCGTAGCCTCAAGTGGTTCTTGAGATGGATCGGACAGCGGTATGGCGAG
GCTACCGCCGAGCAGTTGTGGCGGCAGATGGGGGAACTCTGTGTCAAAAC
GGTGCTATCTATCGAGCCGACATTAGTGCGGGATTACAAGGCCCTCTTTG
GCGAAGACGGCGGCGGCGGTGCTAATAATGATGAGCCTTTATCATCGTCA
CCAAGCTGTGTCCAAGGGTCTAGAGCATTCGAGATCCTTGGTTTTGACAT
ATTGATTGATCAAGCTCTCAAGCCCTGGCTAATCGAGGTCAATACGCTAC
CAAGTTTTGCCACGGAATCGCCCGTGGACCGTCACGTGAAGCAGGACCTG
ATTGAACAGACATTGCGTGCTGTCCAAGCCCAGGCTTCCGACAAACAGTC
GTTCCAGGCACGTCGAAAGACACAGGCTAAGGAGCGTTTGCACCGGCACC
GACAGCACATCGATGCGCTGAGCAACTCCCTGCGGGACGAGGCCAATGTT
GTGGTACAGACTCGAAGAAGAATTGAGAGCCTACTTCAGCAGCATGCACC
GAATCGTCTTACTATGGTAGATGACCTTATGCGCAAAAACAAAGGCCGCG
AAGCTTCATTATTGGGACGTCTCATGCGGCATTTTCAAATTCAAAAGCGC
AAGATGGGTCCGACATTGCACCCACAAAGTCAACGGAGTGACAGTTCTGG
CGGGAGCGCCAGCAGAATTGAGGACTTTTGCGAAGTTGAAGAAGCGCGAT
GCCCGAGCCCGGGATCTTGCTTGTCTTCATTGTCATCTTGCTCCTTATCC
TCGTCTTCTTTTTCATTGTTTCCAGCTCAGTCTGAGTTTGACGGACAACG
ACGTGAATTGATCTATGCGGAGGAAGGTAGCAAGGAGGAGGAACCGGAGG
AGATGGAGCTGATGGACGTGCATGATGAAGCCACTCTTTTGAAGGACTTT
GAGCAAATCTACCCTCTTCCTACAGGCGCCCTTGATGTGTATTCCCACCT
AGTCGAATACATATGGGATAGAGAGCACAAACTCTTGCGCGGCAATCGTG
GTCCGACCCAGCAACATGGCACTGCCACCACCAGCAGCTTGCACCGGATG
CGGCTTCGGTCGTTCATACCCACTACCTCGTCTAGGGCGCGTCCCGGTCA
AGTAATCGCATCAAACTCCAGAGGACGGGTTGATGATGGTGAATATGACG
AGCACGATGCCATGCATCTCCGGGTTGATAACAAGCAAGACAGGAATGTT
GCACCGGCTGTCCTGGGTCTGCTCATAAGGCGGACCTCCGTGTCGCGGCA
AGAGCGGTCAGTGGCTGCATCTGAGGACAATGGAAAGCTGGACACTCTAC
TTCTCAATCTTGTCTCGAATGGCAGCAGTAGAAGTAGTCGAATTGGGAGC
CAGGGGAGAAGGTCATCTTCCTCCGCATCGTCGTGTAGTGGAAGTGTTGC
ATCGGCCCCGTCTCTGGCGCAACAGACGGCCGCTGCAGAACGGCTGATGC
GTGGTTATACCAGCGGCGAGTACATTGGAATTAAGAAGGGCCGAACATTA
ATAACTACACGATTACCACCACTGTCAACGACTGCGCGGCGGCCACTTGG
AGGACTGCGGTCCGGGTACAGGGCGATGACGCCTAAGGTCCTGGACTTGG
CAAGTTGTGTGAGCTTTTAAACGATATCTTATGAGTGCATATATGTATAG
ATAAATGGGACCACGGAGAGAAGAGAAAAGGTTTACCGAAGCGATATTAT
GGGTGAGTTAAAAAGAAGGGCCAAGGAAAGCAG

protein sequence of jgi.p|Nanoce1779_2|656546

>mRNA_8620-protein ID=mRNA_8620-protein|Name=jgi.p|Nanoce1779_2|656546|organism=Nannochloropsis oceanica|type=polypeptide|length=840bp
MPTLRQPLVIQKNNNQSFNQANANSGVVAAAAETTKKTTHQALTRRRVTL
CTVDSRYDIITEAAKTCGMRVVGHNDDGCNIYWLDISTISERFSRLEPWQ
RINHFPGMSHISRKNRLAQNLGKMRRHFPKEYAFYPKTWSLPQEAEDFWA
QFCPEGRAARGITFILKPENSSKGRGIFLTKSLDAISLTEPQVAQVYIHR
PLLMEGFKFDIRMYTLVTSCQPLRLYKYSDGLVRLCTTEYMQPNAANMGD
RYMHLTNSAINRFSENYSVRGGAGIENEDETGSKRSLKWFLRWIGQRYGE
ATAEQLWRQMGELCVKTVLSIEPTLVRDYKALFGEDGGGGANNDEPLSSS
PSCVQGSRAFEILGFDILIDQALKPWLIEVNTLPSFATESPVDRHVKQDL
IEQTLRAVQAQASDKQSFQARRKTQAKERLHRHRQHIDALSNSLRDEANV
VVQTRRRIESLLQQHAPNRLTMVDDLMRKNKGREASLLGRLMRHFQIQKR
KMGPTLHPQSQRSDSSGGSASRIEDFCEVEEARCPSPGSCLSSLSSCSLS
SSSFSLFPAQSEFDGQRRELIYAEEGSKEEEPEEMELMDVHDEATLLKDF
EQIYPLPTGALDVYSHLVEYIWDREHKLLRGNRGPTQQHGTATTSSLHRM
RLRSFIPTTSSRARPGQVIASNSRGRVDDGEYDEHDAMHLRVDNKQDRNV
APAVLGLLIRRTSVSRQERSVAASEDNGKLDTLLLNLVSNGSSRSSRIGS
QGRRSSSSASSCSGSVASAPSLAQQTAAAERLMRGYTSGEYIGIKKGRTL
ITTRLPPLSTTARRPLGGLRSGYRAMTPKVLDLASCVSF*

mRNA from alignment at scaffold_26:370385..373017+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_8620 ID=mRNA_8620|Name=jgi.p|Nanoce1779_2|656546|organism=Nannochloropsis oceanica|type=mRNA|length=2633bp|location=Sequence derived from alignment at scaffold_26:370385..373017+ (Nannochloropsis oceanica)
ATGCCAACCCTCCGGCAGCCTCTAGTCATCCAAAAGAATAACAACCAGTC
CTTTAATCAAGCCAATGCCAATTCTGGTGTCGTCGCCGCTGCAGCTGAGA
CCACCAAGAAGACAACGCACCAAGCATTGACACGGCGGAGAGTGACGCTT
TGTACCGTGGACAGTCGATATGACATTATTACAGAAGCAGCCAAGACATG
TGGCATGCGTGTGGTGGGTCACAACGACGATGGCTGCAATATCTACTGGC
TGGATATCTCCACCATTTCCGAACGCTTTAGCCGCCTCGAGCCCTGGCAG
CGTATCAACCACTTTCCCGGTATGAGCCATATTTCCCGCAAGAATCGCCT
GGCACAAAATCTGGGCAAGATGCGGCGTCACTTTCCGAAGGAATACGCGT
TTTACCCCAAGACATGGTCCTTGCCACAGGAAGCCGAGGACTTTTGGGCG
CAGTTCTGTCCCGAGGGTCGGGCAGCCCGGGGCATAACGTTCATCCTCAA
ACCTGAAAATAGCTCCAAAGGTCGAGGCATTTTTCTGACCAAGTCGCTAG
ATGCCATCTCCTTGACGGAGCCTCAGGTGGCGCAGGTTTACATCCATCGA
CCTTTGTTGATGGAGGGCTTCAAGTTCGACATCCGTATGTACACCCTCGT
CACAAGCTGCCAGCCATTGCGCCTCTACAAGTACAGCGACGGCTTAGTGC
GCCTTTGCACAACCGAGTATATGCAGCCCAATGCGGCCAACATGGGCGAT
CGGTACATGCATCTCACTAACAGTGCCATCAATCGCTTCTCTGAAAACTA
TTCCGTTAGGGGAGGGGCGGGGATAGAGAACGAGGATGAAACCGGAAGCA
AGCGTAGCCTCAAGTGGTTCTTGAGATGGATCGGACAGCGGTATGGCGAG
GCTACCGCCGAGCAGTTGTGGCGGCAGATGGGGGAACTCTGTGTCAAAAC
GGTGCTATCTATCGAGCCGACATTAGTGCGGGATTACAAGGCCCTCTTTG
GCGAAGACGGCGGCGGCGGTGCTAATAATGATGAGCCTTTATCATCGTCA
CCAAGCTGTGTCCAAGGGTCTAGAGCATTCGAGATCCTTGGTTTTGACAT
ATTGATTGATCAAGCTCTCAAGCCCTGGCTAATCGAGGTCAATACGCTAC
CAAGTTTTGCCACGGAATCGCCCGTGGACCGTCACGTGAAGCAGGACCTG
ATTGAACAGACATTGCGTGCTGTCCAAGCCCAGGCTTCCGACAAACAGTC
GTTCCAGGCACGTCGAAAGACACAGGCTAAGGAGCGTTTGCACCGGCACC
GACAGCACATCGATGCGCTGAGCAACTCCCTGCGGGACGAGGCCAATGTT
GTGGTACAGACTCGAAGAAGAATTGAGAGCCTACTTCAGCAGCATGCACC
GAATCGTCTTACTATGGTAGATGACCTTATGCGCAAAAACAAAGGCCGCG
AAGCTTCATTATTGGGACGTCTCATGCGGCATTTTCAAATTCAAAAGCGC
AAGATGGGTCCGACATTGCACCCACAAAGTCAACGGAGTGACAGTTCTGG
CGGGAGCGCCAGCAGAATTGAGGACTTTTGCGAAGTTGAAGAAGCGCGAT
GCCCGAGCCCGGGATCTTGCTTGTCTTCATTGTCATCTTGCTCCTTATCC
TCGTCTTCTTTTTCATTGTTTCCAGCTCAGTCTGAGTTTGACGGACAACG
ACGTGAATTGATCTATGCGGAGGAAGGTAGCAAGGAGGAGGAACCGGAGG
AGATGGAGCTGATGGACGTGCATGATGAAGCCACTCTTTTGAAGGACTTT
GAGCAAATCTACCCTCTTCCTACAGGCGCCCTTGATGTGTATTCCCACCT
AGTCGAATACATATGGGATAGAGAGCACAAACTCTTGCGCGGCAATCGTG
GTCCGACCCAGCAACATGGCACTGCCACCACCAGCAGCTTGCACCGGATG
CGGCTTCGGTCGTTCATACCCACTACCTCGTCTAGGGCGCGTCCCGGTCA
AGTAATCGCATCAAACTCCAGAGGACGGGTTGATGATGGTGAATATGACG
AGCACGATGCCATGCATCTCCGGGTTGATAACAAGCAAGACAGGAATGTT
GCACCGGCTGTCCTGGGTCTGCTCATAAGGCGGACCTCCGTGTCGCGGCA
AGAGCGGTCAGTGGCTGCATCTGAGGACAATGGAAAGCTGGACACTCTAC
TTCTCAATCTTGTCTCGAATGGCAGCAGTAGAAGTAGTCGAATTGGGAGC
CAGGGGAGAAGGTCATCTTCCTCCGCATCGTCGTGTAGTGGAAGTGTTGC
ATCGGCCCCGTCTCTGGCGCAACAGACGGCCGCTGCAGAACGGCTGATGC
GTGGTTATACCAGCGGCGAGTACATTGGAATTAAGAAGGGCCGAACATTA
ATAACTACACGATTACCACCACTGTCAACGACTGCGCGGCGGCCACTTGG
AGGACTGCGGTCCGGGTACAGGGCGATGACGCCTAAGGTCCTGGACTTGG
CAAGTTGTGTGAGCTTTTAAACGATATCTTATGAGTGCATATATGTATAG
ATAAATGGGACCACGGAGAGAAGAGAAAAGGTTTACCGAAGCGATATTAT
GGGTGAGTTAAAAAGAAGGGCCAAGGAAAGCAG

Coding sequence (CDS) from alignment at scaffold_26:370385..373017+

>mRNA_8620 ID=mRNA_8620|Name=jgi.p|Nanoce1779_2|656546|organism=Nannochloropsis oceanica|type=CDS|length=2520bp|location=Sequence derived from alignment at scaffold_26:370385..373017+ (Nannochloropsis oceanica)
ATGCCAACCCTCCGGCAGCCTCTAGTCATCCAAAAGAATAACAACCAGTC
CTTTAATCAAGCCAATGCCAATTCTGGTGTCGTCGCCGCTGCAGCTGAGA
CCACCAAGAAGACAACGCACCAAGCATTGACACGGCGGAGAGTGACGCTT
TGTACCGTGGACAGTCGATATGACATTATTACAGAAGCAGCCAAGACATG
TGGCATGCGTGTGGTGGGTCACAACGACGATGGCTGCAATATCTACTGGC
TGGATATCTCCACCATTTCCGAACGCTTTAGCCGCCTCGAGCCCTGGCAG
CGTATCAACCACTTTCCCGGTATGAGCCATATTTCCCGCAAGAATCGCCT
GGCACAAAATCTGGGCAAGATGCGGCGTCACTTTCCGAAGGAATACGCGT
TTTACCCCAAGACATGGTCCTTGCCACAGGAAGCCGAGGACTTTTGGGCG
CAGTTCTGTCCCGAGGGTCGGGCAGCCCGGGGCATAACGTTCATCCTCAA
ACCTGAAAATAGCTCCAAAGGTCGAGGCATTTTTCTGACCAAGTCGCTAG
ATGCCATCTCCTTGACGGAGCCTCAGGTGGCGCAGGTTTACATCCATCGA
CCTTTGTTGATGGAGGGCTTCAAGTTCGACATCCGTATGTACACCCTCGT
CACAAGCTGCCAGCCATTGCGCCTCTACAAGTACAGCGACGGCTTAGTGC
GCCTTTGCACAACCGAGTATATGCAGCCCAATGCGGCCAACATGGGCGAT
CGGTACATGCATCTCACTAACAGTGCCATCAATCGCTTCTCTGAAAACTA
TTCCGTTAGGGGAGGGGCGGGGATAGAGAACGAGGATGAAACCGGAAGCA
AGCGTAGCCTCAAGTGGTTCTTGAGATGGATCGGACAGCGGTATGGCGAG
GCTACCGCCGAGCAGTTGTGGCGGCAGATGGGGGAACTCTGTGTCAAAAC
GGTGCTATCTATCGAGCCGACATTAGTGCGGGATTACAAGGCCCTCTTTG
GCGAAGACGGCGGCGGCGGTGCTAATAATGATGAGCCTTTATCATCGTCA
CCAAGCTGTGTCCAAGGGTCTAGAGCATTCGAGATCCTTGGTTTTGACAT
ATTGATTGATCAAGCTCTCAAGCCCTGGCTAATCGAGGTCAATACGCTAC
CAAGTTTTGCCACGGAATCGCCCGTGGACCGTCACGTGAAGCAGGACCTG
ATTGAACAGACATTGCGTGCTGTCCAAGCCCAGGCTTCCGACAAACAGTC
GTTCCAGGCACGTCGAAAGACACAGGCTAAGGAGCGTTTGCACCGGCACC
GACAGCACATCGATGCGCTGAGCAACTCCCTGCGGGACGAGGCCAATGTT
GTGGTACAGACTCGAAGAAGAATTGAGAGCCTACTTCAGCAGCATGCACC
GAATCGTCTTACTATGGTAGATGACCTTATGCGCAAAAACAAAGGCCGCG
AAGCTTCATTATTGGGACGTCTCATGCGGCATTTTCAAATTCAAAAGCGC
AAGATGGGTCCGACATTGCACCCACAAAGTCAACGGAGTGACAGTTCTGG
CGGGAGCGCCAGCAGAATTGAGGACTTTTGCGAAGTTGAAGAAGCGCGAT
GCCCGAGCCCGGGATCTTGCTTGTCTTCATTGTCATCTTGCTCCTTATCC
TCGTCTTCTTTTTCATTGTTTCCAGCTCAGTCTGAGTTTGACGGACAACG
ACGTGAATTGATCTATGCGGAGGAAGGTAGCAAGGAGGAGGAACCGGAGG
AGATGGAGCTGATGGACGTGCATGATGAAGCCACTCTTTTGAAGGACTTT
GAGCAAATCTACCCTCTTCCTACAGGCGCCCTTGATGTGTATTCCCACCT
AGTCGAATACATATGGGATAGAGAGCACAAACTCTTGCGCGGCAATCGTG
GTCCGACCCAGCAACATGGCACTGCCACCACCAGCAGCTTGCACCGGATG
CGGCTTCGGTCGTTCATACCCACTACCTCGTCTAGGGCGCGTCCCGGTCA
AGTAATCGCATCAAACTCCAGAGGACGGGTTGATGATGGTGAATATGACG
AGCACGATGCCATGCATCTCCGGGTTGATAACAAGCAAGACAGGAATGTT
GCACCGGCTGTCCTGGGTCTGCTCATAAGGCGGACCTCCGTGTCGCGGCA
AGAGCGGTCAGTGGCTGCATCTGAGGACAATGGAAAGCTGGACACTCTAC
TTCTCAATCTTGTCTCGAATGGCAGCAGTAGAAGTAGTCGAATTGGGAGC
CAGGGGAGAAGGTCATCTTCCTCCGCATCGTCGTGTAGTGGAAGTGTTGC
ATCGGCCCCGTCTCTGGCGCAACAGACGGCCGCTGCAGAACGGCTGATGC
GTGGTTATACCAGCGGCGAGTACATTGGAATTAAGAAGGGCCGAACATTA
ATAACTACACGATTACCACCACTGTCAACGACTGCGCGGCGGCCACTTGG
AGGACTGCGGTCCGGGTACAGGGCGATGACGCCTAAGGTCCTGGACTTGG
CAAGTTGTGTGAGCTTTTAA

Synonyms

Publications