jgi.p|Nanoce1779_2|574415, mRNA_862 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|574415
Unique Name	mRNA_862
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1474
Alignment location	scaffold_2:604577..606169 +

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Properties


Property Name	Value
TranscriptId	574501
Track	FilteredModels2
ProteinId	574415

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_2	supercontig	scaffold_2:604577..606169 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|574415	gene_862	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|574415	mRNA_862-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_862	CDS_862	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_2:604577..606169+
coding sequence from alignment at scaffold_2:604577..606169+

mRNA sequence

>mRNA_862 ID=mRNA_862|Name=jgi.p|Nanoce1779_2|574415|organism=Nannochloropsis oceanica|type=mRNA|length=1474bp
TGGACGACGGTGTGGGCCACAACTCCGAGTTGTTGCGGAGAAGCGAGTCG
AATGCCGCGAGTGTAGTACCTAAGCAGCGCTCGAGTCTGAGTTTCCTCAG
TTTAGGCGGGAGTAGCAGCAAGGCCCGGAAGCACATAGAATTGGGAAACC
CGCATGGCGCGGGCATTGCGCTCGGAGGTATGGCTGATGATGCAGCTCTC
TCGGCAGCTACGGCAGCGGGAGGTAAGGAGAGTTGGAGAGATCGAGAGGC
GGGCAGCGACGTTCACCATGGGCATGAACGGCCATCTTTCCGGGTGATCG
GTGTGCAGATCTCACACATGTCACGGACGGGGCAGTTTCTGTTCTGTACT
TTTGGGGTCTTTTCTTTTTTGTTGGTATACGGGTTCCTTCAGGAGTATAT
GGTTATTCACGTCTTCCAGCGGCAGTTGGGCATCTTCTTGACTTTGTGTC
AATTTGCGGGTTACTCGTCATTGGCGGCTTTGCATCGGCTCATTCATGCG
GATACGCCACGGAGAATCCCGTTGGGGTACTACGTCTTGCTGGCGACGCT
GCAAGCGACGATGCAGGGGTTGACGAATTTGTCAATGCGGTGGTTGAACT
ACCCGGCGAAGATGTTGTTCAAGTCTTCGAGGGTGATTCCGACAATGATC
GTGGGGGTTTTCATCATGAAGAAGCGGTACAAGATGAAAGACTACATGGT
CGTCGCCCTTCTATCCCTGGGCCTCGTCTTCTTCATCCAAGCCGACGTGA
AAGTATCCCCCTCCTTTCATCCTCTGGGGATAATTTTCATCTCCATGGCT
CTAGTCGTCGATGCGGCCATAGTGAACATCCAGGAATACACCTTGAGGAG
ATACGACGCTAGCCATGACGAACTCATCTTCTACTCCTACGGCATTGGAT
CGTTCATCCTTTTTGCCTACTGCCTCTTCTCCATGGAGCTTTACGATGGC
ATCGTATTTCTCCGCTCCCAGCCCCCTCGCAGCACCCTCTGTCTCATCAT
TTTCTGTTTCTGCGGCTACTTCGGTGTCACCTGCGTGGCGGCCCTGACCA
AGAAATTCGGTGCTCTTGCCTCGACTATGACGACAACCGCACGGAAAGCC
TTGACACTCTTTCTTTCCTTCTTCATCTTTCCGAAACCTGCCACGGGGAT
GCATGTTTTTGGGGGGGTCCTTTTCGTGTTGGGGCTGTCCGTTAAAGCTG
TGCCCACAGGCCGGAACAAGGATTATGCTTCCTCTTCCTCCGCCTCCTCC
TCCATCCCCTCCACCTCTTCGGCCGCAACGTTACTATCCCCTTCTTGTTC
CTCCCCCTCGCATGCATCCATGAAGTCAAAACAAACACGTTCGTTGCTCT
CCTCGTCCGCGGCAGTGCCACCATCATCATCATCATCATCATCGGCAGCG
GCATCAGCAGTTGCCACCTCGCATCAGGCGATGGGGAGCATCGCAAAAAG
CATAGAATTAGTCTAATGCATAAA

protein sequence of jgi.p|Nanoce1779_2|574415

>mRNA_862-protein ID=mRNA_862-protein|Name=jgi.p|Nanoce1779_2|574415|organism=Nannochloropsis oceanica|type=polypeptide|length=429bp
MADDAALSAATAAGGKESWRDREAGSDVHHGHERPSFRVIGVQISHMSRT
GQFLFCTFGVFSFLLVYGFLQEYMVIHVFQRQLGIFLTLCQFAGYSSLAA
LHRLIHADTPRRIPLGYYVLLATLQATMQGLTNLSMRWLNYPAKMLFKSS
RVIPTMIVGVFIMKKRYKMKDYMVVALLSLGLVFFIQADVKVSPSFHPLG
IIFISMALVVDAAIVNIQEYTLRRYDASHDELIFYSYGIGSFILFAYCLF
SMELYDGIVFLRSQPPRSTLCLIIFCFCGYFGVTCVAALTKKFGALASTM
TTTARKALTLFLSFFIFPKPATGMHVFGGVLFVLGLSVKAVPTGRNKDYA
SSSSASSSIPSTSSAATLLSPSCSSPSHASMKSKQTRSLLSSSAAVPPSS
SSSSSAAASAVATSHQAMGSIAKSIELV*

mRNA from alignment at scaffold_2:604577..606169+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_862 ID=mRNA_862|Name=jgi.p|Nanoce1779_2|574415|organism=Nannochloropsis oceanica|type=mRNA|length=1593bp|location=Sequence derived from alignment at scaffold_2:604577..606169+ (Nannochloropsis oceanica)
TGGACGACGGTGTGGGCCACAACTCCGAGTTGTTGCGGAGAAGCGAGTCG
AATGCCGCGAGTGTAGTACCTAAGCAGCGCTCGAGTCTGAGTTTCCTCAG
TTTAGGCGGGAGTAGCAGCAAGGCCCGGAAGCACATAGAATTGGGAAACC
CGCATGGCGCGGGCATTGCGCTCGGAGGTATGGCTGATGATGCAGCTCTC
TCGGCAGCTACGGCAGCGGGAGGTAAGGAGAGTTGGAGAGATCGAGAGGC
GGGCAGCGACGTTCACCATGGGCATGAACGGCCATCTTTCCGGGTGATCG
GTGTGCAGATCTCACACATGTCACGGACGGGGCAGTTTCTGTTCTGTACT
TTTGGGGTCTTTTCTTTTTTGTTGGTATACGGGTTCCTTCAGGAGTATAT
GGTTATTCACGTCTTCCAGCGGCAGTTGGGCATCTTCTTGACTTTGTGTC
AATTTGCGGGTTACTCGTCATTGGCGGCTTTGCATCGGCTCATTCATGCG
GATACGCCACGGAGAATCCCGTTGGGGTACTACGTCTTGCTGGCGACGCT
GCAAGCGACGATGCAGGGGTTGACGAATTTGTCAATGCGGTGGTTGAACT
ACCCGGCGAAGATGTTGTTCAAGTCTTCGAGGGTGATTCCGACAATGATC
GTGGGGGTTTTCATCATGAAGAAGCGGTACAAGGTACACTCGTGCTTTTG
TGTTGAGGGGGGTTGTGACGGATTTGTTGGTCGTTCATCTTAAGATTTAC
GTCTCACGTACTCCCTTCCGCCCTCCCTCTCTCCCTCCCCAACCTTTCTC
AGATGAAAGACTACATGGTCGTCGCCCTTCTATCCCTGGGCCTCGTCTTC
TTCATCCAAGCCGACGTGAAAGTATCCCCCTCCTTTCATCCTCTGGGGAT
AATTTTCATCTCCATGGCTCTAGTCGTCGATGCGGCCATAGTGAACATCC
AGGAATACACCTTGAGGAGATACGACGCTAGCCATGACGAACTCATCTTC
TACTCCTACGGCATTGGATCGTTCATCCTTTTTGCCTACTGCCTCTTCTC
CATGGAGCTTTACGATGGCATCGTATTTCTCCGCTCCCAGCCCCCTCGCA
GCACCCTCTGTCTCATCATTTTCTGTTTCTGCGGCTACTTCGGTGTCACC
TGCGTGGCGGCCCTGACCAAGAAATTCGGTGCTCTTGCCTCGACTATGAC
GACAACCGCACGGAAAGCCTTGACACTCTTTCTTTCCTTCTTCATCTTTC
CGAAACCTGCCACGGGGATGCATGTTTTTGGGGGGGTCCTTTTCGTGTTG
GGGCTGTCCGTTAAAGCTGTGCCCACAGGCCGGAACAAGGATTATGCTTC
CTCTTCCTCCGCCTCCTCCTCCATCCCCTCCACCTCTTCGGCCGCAACGT
TACTATCCCCTTCTTGTTCCTCCCCCTCGCATGCATCCATGAAGTCAAAA
CAAACACGTTCGTTGCTCTCCTCGTCCGCGGCAGTGCCACCATCATCATC
ATCATCATCATCGGCAGCGGCATCAGCAGTTGCCACCTCGCATCAGGCGA
TGGGGAGCATCGCAAAAAGCATAGAATTAGTCTAATGCATAAA

Coding sequence (CDS) from alignment at scaffold_2:604577..606169+

>mRNA_862 ID=mRNA_862|Name=jgi.p|Nanoce1779_2|574415|organism=Nannochloropsis oceanica|type=CDS|length=2574bp|location=Sequence derived from alignment at scaffold_2:604577..606169+ (Nannochloropsis oceanica)
ATGGCTGATGATGCAGCTCTCTCGGCAGCTACGGCAGCGGGAGGTAAGGA
GAGTTGGAGAGATCGAGAGGCGGGCAGCGACGTTCACCATGGGCATGAAC
GGCCATCTTTCCGGGTGATCGGTGTGCAGATCTCACACATGTCACGGACG
GGGCAGTTTCTGTTCTGTACTTTTGGGGTCTTTTCTTTTTTGTTGGTATA
CGGGTTCCTTCAGGAGTATATGGTTATTCACGTCTTCCAGCGGCAGTTGG
GCATCTTCTTGACTTTGTGTCAATTTGCGGGTTACTCGTCATTGGCGGCT
TTGCATCGGCTCATTCATGCGGATACGCCACGGAGAATCCCGTTGGGGTA
CTACGTCTTGCTGGCGACGCTGCAAGCGACGATGCAGGGGTTGACGAATT
TGTCAATGCGGTGGTTGAACTACCCGGCGAAGATGTTGTTCAAGTCTTCG
AGGGTGATTCCGACAATGATCGTGGGGGTTTTCATCATGAAGAAGCGGTA
CAAGATGAAAGACTACATGGTCGTCGCCCTTCTATCCCTGGGCCTCGTCT
TCTTCATCCAAGCCGACGTGAAAGTATCCCCCTCCTTTCATCCTCTGGGG
ATAATTTTCATCTCCATGGCTCTAGTCGTCGATGCGGCCATAGTGAACAT
CCAGGAATACACCTTGAGGAGATACGACGCTAGCCATGACGAACTCATCT
TCTACTCCTACGGCATTGGATCGTTCATCCTTTTTGCCTACTGCCTCTTC
TCCATGGAGCTTTACGATGGCATCGTATTTCTCCGCTCCCAGCCCCCTCG
CAGCACCCTCTGTCTCATCATTTTCTGTTTCTGCGGCTACTTCGGTGTCA
CCTGCGTGGCGGCCCTGACCAAGAAATTCGGTGCTCTTGCCTCGACTATG
ACGACAACCGCACGGAAAGCCTTGACACTCTTTCTTTCCTTCTTCATCTT
TCCGAAACCTGCCACGGGGATGCATGTTTTTGGGGGGGTCCTTTTCGTGT
TGGGGCTGTCCGTTAAAGCTGTGCCCACAGGCCGGAACAAGGATTATGCT
TCCTCTTCCTCCGCCTCCTCCTCCATCCCCTCCACCTCTTCGGCCGCAAC
GTTACTATCCCCTTCTTGTTCCTCCCCCTCGCATGCATCCATGAAGTCAA
AACAAACACGTTCGTTGCTCTCCTCGTCCGCGGCAGTGCCACCATCATCA
TCATCATCATCATCGGCAGCGGCATCAGCAGTTGCCACCTCGCATCAGGC
GATGGGGAGCATCGCAAAAAGCATAGAATTAGTCTAAATGGCTGATGATG
CAGCTCTCTCGGCAGCTACGGCAGCGGGAGGTAAGGAGAGTTGGAGAGAT
CGAGAGGCGGGCAGCGACGTTCACCATGGGCATGAACGGCCATCTTTCCG
GGTGATCGGTGTGCAGATCTCACACATGTCACGGACGGGGCAGTTTCTGT
TCTGTACTTTTGGGGTCTTTTCTTTTTTGTTGGTATACGGGTTCCTTCAG
GAGTATATGGTTATTCACGTCTTCCAGCGGCAGTTGGGCATCTTCTTGAC
TTTGTGTCAATTTGCGGGTTACTCGTCATTGGCGGCTTTGCATCGGCTCA
TTCATGCGGATACGCCACGGAGAATCCCGTTGGGGTACTACGTCTTGCTG
GCGACGCTGCAAGCGACGATGCAGGGGTTGACGAATTTGTCAATGCGGTG
GTTGAACTACCCGGCGAAGATGTTGTTCAAGTCTTCGAGGGTGATTCCGA
CAATGATCGTGGGGGTTTTCATCATGAAGAAGCGGTACAAGATGAAAGAC
TACATGGTCGTCGCCCTTCTATCCCTGGGCCTCGTCTTCTTCATCCAAGC
CGACGTGAAAGTATCCCCCTCCTTTCATCCTCTGGGGATAATTTTCATCT
CCATGGCTCTAGTCGTCGATGCGGCCATAGTGAACATCCAGGAATACACC
TTGAGGAGATACGACGCTAGCCATGACGAACTCATCTTCTACTCCTACGG
CATTGGATCGTTCATCCTTTTTGCCTACTGCCTCTTCTCCATGGAGCTTT
ACGATGGCATCGTATTTCTCCGCTCCCAGCCCCCTCGCAGCACCCTCTGT
CTCATCATTTTCTGTTTCTGCGGCTACTTCGGTGTCACCTGCGTGGCGGC
CCTGACCAAGAAATTCGGTGCTCTTGCCTCGACTATGACGACAACCGCAC
GGAAAGCCTTGACACTCTTTCTTTCCTTCTTCATCTTTCCGAAACCTGCC
ACGGGGATGCATGTTTTTGGGGGGGTCCTTTTCGTGTTGGGGCTGTCCGT
TAAAGCTGTGCCCACAGGCCGGAACAAGGATTATGCTTCCTCTTCCTCCG
CCTCCTCCTCCATCCCCTCCACCTCTTCGGCCGCAACGTTACTATCCCCT
TCTTGTTCCTCCCCCTCGCATGCATCCATGAAGTCAAAACAAACACGTTC
GTTGCTCTCCTCGTCCGCGGCAGTGCCACCATCATCATCATCATCATCAT
CGGCAGCGGCATCAGCAGTTGCCACCTCGCATCAGGCGATGGGGAGCATC
GCAAAAAGCATAGAATTAGTCTAA

Synonyms

Publications