jgi.p|Nanoce1779_2|603368, mRNA_8619 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|603368
Unique Name	mRNA_8619
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1077
Alignment location	scaffold_26:368918..369994 -

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Properties


Property Name	Value
TranscriptId	603454
Track	FilteredModels2
ProteinId	603368

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_26	supercontig	scaffold_26:368918..369994 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|603368	gene_8619	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|603368	mRNA_8619-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_8619	CDS_8619	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_26:368918..369994-
coding sequence from alignment at scaffold_26:368918..369994-

mRNA sequence

>mRNA_8619 ID=mRNA_8619|Name=jgi.p|Nanoce1779_2|603368|organism=Nannochloropsis oceanica|type=mRNA|length=1077bp
GATTTTAAAGCTGGATAGACATCAAGTAAGAAACAAGAAGAGATGCTCCC
CGAAAAAAATCGGCAGGAATGTTCTTGAGGGTATTATTACTCTATTCCTG
TAGCTTTCTCTGTCTGTTGTTCTTCTTGTTGTCAGTGTCTTCATATGGAG
TATTTAATATCATTAATTGATGACATGTGAATGTACGTGATTATCCCAAT
AAAACAAAGGGGGAAGCAAGCATTCTTCGCATGTCTGCGTCTTCCAGTCA
TCGGCTTCGATATATTCCTTTATATCTTTTGGGCCTTCTTATTTTTTAGT
ACTCCTATCTTTTTTTTTTTAATTTTTTGTTTTATTTTATACTTATGCTA
TTTTACCTTCTCTCTCTTCTGTCAGTTGATGGAGGACGCTATATCATCCG
CGTGGGTGCTTCCTCGCATTCCCTTATTTAAGGCTTTTTCCGCTTTTGTC
GCCCACTCATTGTTGTATCTTGCTTTGGTTGCTCCTACTTCCCATTTTAC
TTTGATCTCCTTCTGTGGCGGTGGTGATGGAAACTATATGTATGTGTCTC
TCTTATCTCTACGTCTCTTTGTTCCCACATGTCTGTCTGTTGCCTCTGAT
TAACTTTCCAGTGCATGGCCTCCACCTTTCCCCTCCCTCCCTCGCCTCGC
ACAACGGCGACTGCTGCTGCTGTTGGTTCTATACACATACCCCAAAATTA
ATTAGCAAGAAACATTCAAATTAATTCCCTCCCCTTGAAAAAAAGGTAAG
AAACATGCACTGAGCGCATATGGCTCTCCATCTCTCCCCCTTTCCCTTCC
TCTCCCGCTTTTCCCTTAACTCCTTCCTTCCTGTCTTCCTACATGCCCAG
CGCGGGGACCGCGCAATTTTTGTTAGTTCGCACCCGCTTTGCGTCTCTTC
TCTCCCTCCCGCTCCACCACACCTCGCGCTTTCTTTTTGCTCGGTACATC
GCTCTCGCTCCCCTCCTCCCCTTCCTCTTCCTCTTCTTCCTCATCTTCTA
CCTGCTCATGCTGCTGCGGCTGCTGCTGATACTGATCCTCCCTCCATGCC
ACATCTCCACCCTCCTTTTTCTTCCTC

protein sequence of jgi.p|Nanoce1779_2|603368

>mRNA_8619-protein ID=mRNA_8619-protein|Name=jgi.p|Nanoce1779_2|603368|organism=Nannochloropsis oceanica|type=polypeptide|length=139bp
MYVIIPIKQRGKQAFFACLRLPVIGFDIFLYIFWAFLFFSTPIFFFLIFC
FILYLCYFTFSLFCQLMEDAISSAWVLPRIPLFKAFSAFVAHSLLYLALV
APTSHFTLISFCGGGDGNYMYVSLLSLRLFVPTCLSVAS

mRNA from alignment at scaffold_26:368918..369994-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_8619 ID=mRNA_8619|Name=jgi.p|Nanoce1779_2|603368|organism=Nannochloropsis oceanica|type=mRNA|length=1077bp|location=Sequence derived from alignment at scaffold_26:368918..369994- (Nannochloropsis oceanica)
GATTTTAAAGCTGGATAGACATCAAGTAAGAAACAAGAAGAGATGCTCCC
CGAAAAAAATCGGCAGGAATGTTCTTGAGGGTATTATTACTCTATTCCTG
TAGCTTTCTCTGTCTGTTGTTCTTCTTGTTGTCAGTGTCTTCATATGGAG
TATTTAATATCATTAATTGATGACATGTGAATGTACGTGATTATCCCAAT
AAAACAAAGGGGGAAGCAAGCATTCTTCGCATGTCTGCGTCTTCCAGTCA
TCGGCTTCGATATATTCCTTTATATCTTTTGGGCCTTCTTATTTTTTAGT
ACTCCTATCTTTTTTTTTTTAATTTTTTGTTTTATTTTATACTTATGCTA
TTTTACCTTCTCTCTCTTCTGTCAGTTGATGGAGGACGCTATATCATCCG
CGTGGGTGCTTCCTCGCATTCCCTTATTTAAGGCTTTTTCCGCTTTTGTC
GCCCACTCATTGTTGTATCTTGCTTTGGTTGCTCCTACTTCCCATTTTAC
TTTGATCTCCTTCTGTGGCGGTGGTGATGGAAACTATATGTATGTGTCTC
TCTTATCTCTACGTCTCTTTGTTCCCACATGTCTGTCTGTTGCCTCTGAT
TAACTTTCCAGTGCATGGCCTCCACCTTTCCCCTCCCTCCCTCGCCTCGC
ACAACGGCGACTGCTGCTGCTGTTGGTTCTATACACATACCCCAAAATTA
ATTAGCAAGAAACATTCAAATTAATTCCCTCCCCTTGAAAAAAAGGTAAG
AAACATGCACTGAGCGCATATGGCTCTCCATCTCTCCCCCTTTCCCTTCC
TCTCCCGCTTTTCCCTTAACTCCTTCCTTCCTGTCTTCCTACATGCCCAG
CGCGGGGACCGCGCAATTTTTGTTAGTTCGCACCCGCTTTGCGTCTCTTC
TCTCCCTCCCGCTCCACCACACCTCGCGCTTTCTTTTTGCTCGGTACATC
GCTCTCGCTCCCCTCCTCCCCTTCCTCTTCCTCTTCTTCCTCATCTTCTA
CCTGCTCATGCTGCTGCGGCTGCTGCTGATACTGATCCTCCCTCCATGCC
ACATCTCCACCCTCCTTTTTCTTCCTC

Coding sequence (CDS) from alignment at scaffold_26:368918..369994-

>mRNA_8619 ID=mRNA_8619|Name=jgi.p|Nanoce1779_2|603368|organism=Nannochloropsis oceanica|type=CDS|length=419bp|location=Sequence derived from alignment at scaffold_26:368918..369994- (Nannochloropsis oceanica)
ATGTACGTGATTATCCCAATAAAACAAAGGGGGAAGCAAGCATTCTTCGC
ATGTCTGCGTCTTCCAGTCATCGGCTTCGATATATTCCTTTATATCTTTT
GGGCCTTCTTATTTTTTAGTACTCCTATCTTTTTTTTTTTAATTTTTTGT
TTTATTTTATACTTATGCTATTTTACCTTCTCTCTCTTCTGTCAGTTGAT
GGAGGACGCTATATCATCCGCGTGGGTGCTTCCTCGCATTCCCTTATTTA
AGGCTTTTTCCGCTTTTGTCGCCCACTCATTGTTGTATCTTGCTTTGGTT
GCTCCTACTTCCCATTTTACTTTGATCTCCTTCTGTGGCGGTGGTGATGG
AAACTATATGTATGTGTCTCTCTTATCTCTACGTCTCTTTGTTCCCACAT
GTCTGTCTGTTGCCTCTGA

Synonyms

Publications