jgi.p|Nanoce1779_2|603360, mRNA_8616 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|603360
Unique Name	mRNA_8616
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	999
Alignment location	scaffold_26:357937..359472 -

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Properties


Property Name	Value
TranscriptId	603446
Track	FilteredModels2
ProteinId	603360

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_26	supercontig	scaffold_26:357937..359472 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|603360	gene_8616	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|603360	mRNA_8616-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_8616	CDS_8616	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_26:357937..359472-
coding sequence from alignment at scaffold_26:357937..359472-

mRNA sequence

>mRNA_8616 ID=mRNA_8616|Name=jgi.p|Nanoce1779_2|603360|organism=Nannochloropsis oceanica|type=mRNA|length=999bp
ACAGGGCAGAAGGATCCAATGAAGCCTTTCCTAACAATAGTGGCCGGGGC
ATGTTTGCTTCTCACAAGCCCGCTGCCAGTCACCTCGTGGGTAGGACCAT
TCTCCCGGTCATCAGCCTCCGCTCGCGCAGCTCCTCCGCCCATTGTCATT
TGCCCAGGCTTTGGGAATGACCAAATCGATTACTTGAATCCAATGAACCT
GGGGGAGGAAGCCGGCATGGTTCAAGCATTGCGTCGTCGAGGCTTTCCTG
TGTATGTAGTCCCCGTCAAGCGCACGGACTGGCTGAAGTTCGCCAACGGC
CTCGTCACCCCCTCCTTCTGGTCTCAAACCATGACGCCCCGCGACCCATC
CTTTGCTTGGTACCTCGACAAAGTCATCACAACGGTAGAAACTGCCGTGA
CTGAAGCGGAAGGAAATAAAGCCCTTCTAGTAGGACATTCGGCAGGTGGT
TGGCTGGCGCGTGCTGCCCTCGGCGACGGCACCTGGGCCGGAGCTGCAGC
AGAAGAAGCGAGTGATCTAGTGAGGGGATGCGTGACTTTGGGGAGTCCGC
ATTTGCCACCAGCTCCACCCGGTATGGACGTGACCCGAGGGGCGCTGGTA
CACGTCCATGTCAATTACCCGGGAGCTTTTTTAAAAAACAAGGGAATTTC
GTACCTCACTGTTGCCGGGGTCGCCGTGGAAGGAAAGAGGGATCAGAGGA
ATAGGGCAGAGCGGAGAAAGGTGACAGCAGGAAGCGAGACAGGGAGGGAG
AGGATTGAGGATTTCGCATGGCGGAGCTATGTCCAAGTGTGTGGGAGGGG
AGATGTCATTGGCGATGGTGTGGTGCCAGTGGAAGCAGCGCATTTGGAAG
GCGCGAAACAGATAAGTTTGAAAGATGTTTTTCATTCCATTAATGCCCCC
AAGGCCTGGTATGGGAGTGAAGAGGTGATCGATCTGTGGTTGAGGCAGGT
AGAGGGATTGAAGTATTGAGGAAGGGCGAGAAGAATATGGAAGGGACGG

protein sequence of jgi.p|Nanoce1779_2|603360

>mRNA_8616-protein ID=mRNA_8616-protein|Name=jgi.p|Nanoce1779_2|603360|organism=Nannochloropsis oceanica|type=polypeptide|length=317bp
MKPFLTIVAGACLLLTSPLPVTSWVGPFSRSSASARAAPPPIVICPGFGN
DQIDYLNPMNLGEEAGMVQALRRRGFPVYVVPVKRTDWLKFANGLVTPSF
WSQTMTPRDPSFAWYLDKVITTVETAVTEAEGNKALLVGHSAGGWLARAA
LGDGTWAGAAAEEASDLVRGCVTLGSPHLPPAPPGMDVTRGALVHVHVNY
PGAFLKNKGISYLTVAGVAVEGKRDQRNRAERRKVTAGSETGRERIEDFA
WRSYVQVCGRGDVIGDGVVPVEAAHLEGAKQISLKDVFHSINAPKAWYGS
EEVIDLWLRQVEGLKY*

mRNA from alignment at scaffold_26:357937..359472-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_8616 ID=mRNA_8616|Name=jgi.p|Nanoce1779_2|603360|organism=Nannochloropsis oceanica|type=mRNA|length=1536bp|location=Sequence derived from alignment at scaffold_26:357937..359472- (Nannochloropsis oceanica)
ACAGGGCAGAAGGATCCAATGAAGCCTTTCCTAACAATAGTGGCCGGGGC
ATGTTTGCTTCTCACAAGCCCGCTGCCAGTCACCTCGTGGGTAGGACCAT
TCTCCCGGTCATCAGCCTCCGCTCGCGCAGCTCCTCCGCCCATTGTCATT
TGCCCAGGTACTTTACAGTGAAGAATGGATATCATTTTCTGCAAGTTGGA
GGTAAAAGGCTGTAGAGGAGGCTCTCTTTCTCCAACCTCCTCCCCCTTTC
CCTACTACCACCTCAGGCTTTGGGAATGACCAAATCGATTACTTGAATCC
AATGAACCTGGGGGAGGAAGCCGGCATGGTTCAAGCATTGCGTCGTCGAG
GCTTTCCTGTGTATGTAGTCCCCGTCAAGCGCACGGACTGGCTGAAGGTA
TGAGGGAGGGGTTTTGGGAGGGGCAGGAAGTCCTGGCATTTTTTTGGAGG
GCATCTTCACCGAATTGTTCGCATGTGTTTCTCGATCGTTTCCCGCTGGG
AGAGCGAGAGGATGTTGAAAGGTAGAACATAAGTGACAGGCATCTACGAG
ATCCACAATCATATCTCCCTCCCTTCCTCCCTCCCTATCCAGTTCGCCAA
CGGCCTCGTCACCCCCTCCTTCTGGTCTCAAACCATGACGCCCCGCGACC
CATCCTTTGCTTGGTACCTCGACAAAGTCATCACAACGGTAGAAACTGCC
GTGACTGAAGCGGAAGGAAATAAAGCCCTTCTAGTAGGACATTCGGCAGG
TGGTTGGCTGGCGCGTGCTGCCCTCGGCGACGGCACCTGGGCCGGAGCTG
CAGCAGAAGAAGCGAGTGATCTAGTGAGGGGATGCGTGACTTTGGGGAGT
CCGCATTTGCCACCAGCTCCACCCGGTATGGACGTGACCCGAGGGGCGCT
GGTACACGTCCATGTCAATTACCCGGGTATGCTCCTCCTTCTCTCCCTCC
TTCCCTCCCTCCCTCTTTCTCTCCCTCCCTCCCTCCCTCCTTCGCTCTCT
CTTTTCCTGGGAGGCTTGCATGTGGGGCCCCTTATTCGGCCGATTTTTAA
CAATAGGGATGCCAAATTGCTGTAAGGATCTTCCTTCGTTTCCCCCTTAA
ATGTGTACGTTTTGTTTTTAATGTCGCTCATTCCTCCCTCTCTCCCTCCC
TCCCTCTAGGAGCTTTTTTAAAAAACAAGGGAATTTCGTACCTCACTGTT
GCCGGGGTCGCCGTGGAAGGAAAGAGGGATCAGAGGAATAGGGCAGAGCG
GAGAAAGGTGACAGCAGGAAGCGAGACAGGGAGGGAGAGGATTGAGGATT
TCGCATGGCGGAGCTATGTCCAAGTGTGTGGGAGGGGAGATGTCATTGGC
GATGGTGTGGTGCCAGTGGAAGCAGCGCATTTGGAAGGCGCGAAACAGAT
AAGTTTGAAAGATGTTTTTCATTCCATTAATGCCCCCAAGGCCTGGTATG
GGAGTGAAGAGGTGATCGATCTGTGGTTGAGGCAGGTAGAGGGATTGAAG
TATTGAGGAAGGGCGAGAAGAATATGGAAGGGACGG

Coding sequence (CDS) from alignment at scaffold_26:357937..359472-

>mRNA_8616 ID=mRNA_8616|Name=jgi.p|Nanoce1779_2|603360|organism=Nannochloropsis oceanica|type=CDS|length=3804bp|location=Sequence derived from alignment at scaffold_26:357937..359472- (Nannochloropsis oceanica)
GAGCTTTTTTAAAAAACAAGGGAATTTCGTACCTCACTGTTGCCGGGGTC
GCCGTGGAAGGAAAGAGGGATCAGAGGAATAGGGCAGAGCGGAGAAAGGT
GACAGCAGGAAGCGAGACAGGGAGGGAGAGGATTGAGGATTTCGCATGGC
GGAGCTATGTCCAAGTGTGTGGGAGGGGAGATGTCATTGGCGATGGTGTG
GTGCCAGTGGAAGCAGCGCATTTGGAAGGCGCGAAACAGATAAGTTTGAA
AGATGTTTTTCATTCCATTAATGCCCCCAAGGCCTGGTATGGGAGTGAAG
AGGTGATCGATCTGTGGTTGAGGCAGGTAGAGGGATTGAAGTATTGATTC
GCCAACGGCCTCGTCACCCCCTCCTTCTGGTCTCAAACCATGACGCCCCG
CGACCCATCCTTTGCTTGGTACCTCGACAAAGTCATCACAACGGTAGAAA
CTGCCGTGACTGAAGCGGAAGGAAATAAAGCCCTTCTAGTAGGACATTCG
GCAGGTGGTTGGCTGGCGCGTGCTGCCCTCGGCGACGGCACCTGGGCCGG
AGCTGCAGCAGAAGAAGCGAGTGATCTAGTGAGGGGATGCGTGACTTTGG
GGAGTCCGCATTTGCCACCAGCTCCACCCGGTATGGACGTGACCCGAGGG
GCGCTGGTACACGTCCATGTCAATTACCCGGGCTTTGGGAATGACCAAAT
CGATTACTTGAATCCAATGAACCTGGGGGAGGAAGCCGGCATGGTTCAAG
CATTGCGTCGTCGAGGCTTTCCTGTGTATGTAGTCCCCGTCAAGCGCACG
GACTGGCTGAAGATGAAGCCTTTCCTAACAATAGTGGCCGGGGCATGTTT
GCTTCTCACAAGCCCGCTGCCAGTCACCTCGTGGGTAGGACCATTCTCCC
GGTCATCAGCCTCCGCTCGCGCAGCTCCTCCGCCCATTGTCATTTGCCCA
GGAGCTTTTTTAAAAAACAAGGGAATTTCGTACCTCACTGTTGCCGGGGT
CGCCGTGGAAGGAAAGAGGGATCAGAGGAATAGGGCAGAGCGGAGAAAGG
TGACAGCAGGAAGCGAGACAGGGAGGGAGAGGATTGAGGATTTCGCATGG
CGGAGCTATGTCCAAGTGTGTGGGAGGGGAGATGTCATTGGCGATGGTGT
GGTGCCAGTGGAAGCAGCGCATTTGGAAGGCGCGAAACAGATAAGTTTGA
AAGATGTTTTTCATTCCATTAATGCCCCCAAGGCCTGGTATGGGAGTGAA
GAGGTGATCGATCTGTGGTTGAGGCAGGTAGAGGGATTGAAGTATTGATT
CGCCAACGGCCTCGTCACCCCCTCCTTCTGGTCTCAAACCATGACGCCCC
GCGACCCATCCTTTGCTTGGTACCTCGACAAAGTCATCACAACGGTAGAA
ACTGCCGTGACTGAAGCGGAAGGAAATAAAGCCCTTCTAGTAGGACATTC
GGCAGGTGGTTGGCTGGCGCGTGCTGCCCTCGGCGACGGCACCTGGGCCG
GAGCTGCAGCAGAAGAAGCGAGTGATCTAGTGAGGGGATGCGTGACTTTG
GGGAGTCCGCATTTGCCACCAGCTCCACCCGGTATGGACGTGACCCGAGG
GGCGCTGGTACACGTCCATGTCAATTACCCGGGCTTTGGGAATGACCAAA
TCGATTACTTGAATCCAATGAACCTGGGGGAGGAAGCCGGCATGGTTCAA
GCATTGCGTCGTCGAGGCTTTCCTGTGTATGTAGTCCCCGTCAAGCGCAC
GGACTGGCTGAAGATGAAGCCTTTCCTAACAATAGTGGCCGGGGCATGTT
TGCTTCTCACAAGCCCGCTGCCAGTCACCTCGTGGGTAGGACCATTCTCC
CGGTCATCAGCCTCCGCTCGCGCAGCTCCTCCGCCCATTGTCATTTGCCC
AGGAGCTTTTTTAAAAAACAAGGGAATTTCGTACCTCACTGTTGCCGGGG
TCGCCGTGGAAGGAAAGAGGGATCAGAGGAATAGGGCAGAGCGGAGAAAG
GTGACAGCAGGAAGCGAGACAGGGAGGGAGAGGATTGAGGATTTCGCATG
GCGGAGCTATGTCCAAGTGTGTGGGAGGGGAGATGTCATTGGCGATGGTG
TGGTGCCAGTGGAAGCAGCGCATTTGGAAGGCGCGAAACAGATAAGTTTG
AAAGATGTTTTTCATTCCATTAATGCCCCCAAGGCCTGGTATGGGAGTGA
AGAGGTGATCGATCTGTGGTTGAGGCAGGTAGAGGGATTGAAGTATTGAT
TCGCCAACGGCCTCGTCACCCCCTCCTTCTGGTCTCAAACCATGACGCCC
CGCGACCCATCCTTTGCTTGGTACCTCGACAAAGTCATCACAACGGTAGA
AACTGCCGTGACTGAAGCGGAAGGAAATAAAGCCCTTCTAGTAGGACATT
CGGCAGGTGGTTGGCTGGCGCGTGCTGCCCTCGGCGACGGCACCTGGGCC
GGAGCTGCAGCAGAAGAAGCGAGTGATCTAGTGAGGGGATGCGTGACTTT
GGGGAGTCCGCATTTGCCACCAGCTCCACCCGGTATGGACGTGACCCGAG
GGGCGCTGGTACACGTCCATGTCAATTACCCGGGCTTTGGGAATGACCAA
ATCGATTACTTGAATCCAATGAACCTGGGGGAGGAAGCCGGCATGGTTCA
AGCATTGCGTCGTCGAGGCTTTCCTGTGTATGTAGTCCCCGTCAAGCGCA
CGGACTGGCTGAAGATGAAGCCTTTCCTAACAATAGTGGCCGGGGCATGT
TTGCTTCTCACAAGCCCGCTGCCAGTCACCTCGTGGGTAGGACCATTCTC
CCGGTCATCAGCCTCCGCTCGCGCAGCTCCTCCGCCCATTGTCATTTGCC
CAGGAGCTTTTTTAAAAAACAAGGGAATTTCGTACCTCACTGTTGCCGGG
GTCGCCGTGGAAGGAAAGAGGGATCAGAGGAATAGGGCAGAGCGGAGAAA
GGTGACAGCAGGAAGCGAGACAGGGAGGGAGAGGATTGAGGATTTCGCAT
GGCGGAGCTATGTCCAAGTGTGTGGGAGGGGAGATGTCATTGGCGATGGT
GTGGTGCCAGTGGAAGCAGCGCATTTGGAAGGCGCGAAACAGATAAGTTT
GAAAGATGTTTTTCATTCCATTAATGCCCCCAAGGCCTGGTATGGGAGTG
AAGAGGTGATCGATCTGTGGTTGAGGCAGGTAGAGGGATTGAAGTATTGA
TTCGCCAACGGCCTCGTCACCCCCTCCTTCTGGTCTCAAACCATGACGCC
CCGCGACCCATCCTTTGCTTGGTACCTCGACAAAGTCATCACAACGGTAG
AAACTGCCGTGACTGAAGCGGAAGGAAATAAAGCCCTTCTAGTAGGACAT
TCGGCAGGTGGTTGGCTGGCGCGTGCTGCCCTCGGCGACGGCACCTGGGC
CGGAGCTGCAGCAGAAGAAGCGAGTGATCTAGTGAGGGGATGCGTGACTT
TGGGGAGTCCGCATTTGCCACCAGCTCCACCCGGTATGGACGTGACCCGA
GGGGCGCTGGTACACGTCCATGTCAATTACCCGGGCTTTGGGAATGACCA
AATCGATTACTTGAATCCAATGAACCTGGGGGAGGAAGCCGGCATGGTTC
AAGCATTGCGTCGTCGAGGCTTTCCTGTGTATGTAGTCCCCGTCAAGCGC
ACGGACTGGCTGAAGATGAAGCCTTTCCTAACAATAGTGGCCGGGGCATG
TTTGCTTCTCACAAGCCCGCTGCCAGTCACCTCGTGGGTAGGACCATTCT
CCCGGTCATCAGCCTCCGCTCGCGCAGCTCCTCCGCCCATTGTCATTTGC
CCAG

Synonyms

Publications