jgi.p|Nanoce1779_2|603358, mRNA_8615 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|603358
Unique NamemRNA_8615
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1229
Alignment locationscaffold_26:356708..357936 -

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Properties
Property NameValue
TranscriptId603444
TrackFilteredModels2
ProteinId603358
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_26supercontigscaffold_26:356708..357936 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|603358gene_8615Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|603358mRNA_8615-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_8615CDS_8615Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_8615 ID=mRNA_8615|Name=jgi.p|Nanoce1779_2|603358|organism=Nannochloropsis oceanica|type=mRNA|length=1229bp
GTGGGAAAAGGTCAGGGAGGGAGGAACGATGGACCAGGGGCAGATGGAAA
AAGTGGTGTATATTAGGATGAAGAAATATCGATTCTTGATTGCTGAGGTG
AGTCCTGTGTGTGCTAATCCTGCGTGTGCTTTTATGAGTAGGTGAAGTTT
TGCCAGAAGAAAAAAACGACGGGAGTGGCGGCAACGGTTGCCTTTCTTCC
GTGCTTAGGTGAATCACCTACTTTTTGCTCTTCATCTGTGTACGTTCGCA
AACCTTATGCCTTCTTTGTCTAGAACATTCTCTTTGGAGGTCTTATTTTT
AGGTTTTGTTTTCTTCCCTCCGTGCTCTCCTCATCCTTTGTGACCAATGG
CAGCGGGTTGCTGATGTGAAAAGAGGAAGAGAGTGAAGAAAGTGAAGAGG
GAACGAGCGCAACCCGCGTCTCTGTTGCTGTTCCCTTCGTCCCTCCTTCT
CTCCCTACCGCCGTTTCGCAAGGATTCCTTTTTCTTGTTCCTCAAAGCAA
CGGATTTACAAGGGCGTGGTCGCCCATACTATCGATAAAATTATAAGACG
GGGTTCGATCCATACTTGAATTATTGCCAGGAGCGCGGATGAAAAAAATT
ACACTTAAAGTTGTTGCTGCTTCTGCTGTTCTATGCTTAATGATCCTGAT
GCTTCACACTATTTATTACATGCACTCTGCTCTTGTGGCTATCTATCTCC
ATCTTCTCTTCCTCCTCCTCTTTTCCCCTCCACGACGTCATAGCGCTTTG
CGCCTCAAATTTCTAAGTTTTAGGGAGAGGTTGAGGTTCGATCCTTTGCT
GTAATCCTTCCTGTCCTCCTTTCCCATTTCCTTCTTCTGCCTCTTCCATT
ACCCATTTCCTTCGTTTCTTGTTGATGTTCTCGTGTCCCTTTTACTGCTT
TTTCTTCTCTTATTATCGCTCTTGTCCTCTTTCCTCCCTCACATATCTCC
GCACCTTTTCCCATTCATTAAGATGCAAATTGTCACGCCATGAGGAAAAC
AATTGTAGTTATACTGCCCGCTCTCCTTTCCTTCCTCCTTCCCACTCGTT
TCTACTCTCCTCAAATTTGTTAAGCACTGAAACTAATAATAGTACGTATG
TACAGAAAAGAAAAATTTTCAAATTTAAAGGAGATAGAGAGACCAACATA
CCCTCACTTACAGGTACGGAGAAAAACACAGAGAGGCTCTCTCAAAACAC
TCTCTCTTTCCCTTCTCCCCACCCACACC
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protein sequence of jgi.p|Nanoce1779_2|603358

>mRNA_8615-protein ID=mRNA_8615-protein|Name=jgi.p|Nanoce1779_2|603358|organism=Nannochloropsis oceanica|type=polypeptide|length=72bp
MKKITLKVVAASAVLCLMILMLHTIYYMHSALVAIYLHLLFLLLFSPPRR
HSALRLKFLSFRERLRFDPLL*
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mRNA from alignment at scaffold_26:356708..357936-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_8615 ID=mRNA_8615|Name=jgi.p|Nanoce1779_2|603358|organism=Nannochloropsis oceanica|type=mRNA|length=1229bp|location=Sequence derived from alignment at scaffold_26:356708..357936- (Nannochloropsis oceanica)
GTGGGAAAAGGTCAGGGAGGGAGGAACGATGGACCAGGGGCAGATGGAAA
AAGTGGTGTATATTAGGATGAAGAAATATCGATTCTTGATTGCTGAGGTG
AGTCCTGTGTGTGCTAATCCTGCGTGTGCTTTTATGAGTAGGTGAAGTTT
TGCCAGAAGAAAAAAACGACGGGAGTGGCGGCAACGGTTGCCTTTCTTCC
GTGCTTAGGTGAATCACCTACTTTTTGCTCTTCATCTGTGTACGTTCGCA
AACCTTATGCCTTCTTTGTCTAGAACATTCTCTTTGGAGGTCTTATTTTT
AGGTTTTGTTTTCTTCCCTCCGTGCTCTCCTCATCCTTTGTGACCAATGG
CAGCGGGTTGCTGATGTGAAAAGAGGAAGAGAGTGAAGAAAGTGAAGAGG
GAACGAGCGCAACCCGCGTCTCTGTTGCTGTTCCCTTCGTCCCTCCTTCT
CTCCCTACCGCCGTTTCGCAAGGATTCCTTTTTCTTGTTCCTCAAAGCAA
CGGATTTACAAGGGCGTGGTCGCCCATACTATCGATAAAATTATAAGACG
GGGTTCGATCCATACTTGAATTATTGCCAGGAGCGCGGATGAAAAAAATT
ACACTTAAAGTTGTTGCTGCTTCTGCTGTTCTATGCTTAATGATCCTGAT
GCTTCACACTATTTATTACATGCACTCTGCTCTTGTGGCTATCTATCTCC
ATCTTCTCTTCCTCCTCCTCTTTTCCCCTCCACGACGTCATAGCGCTTTG
CGCCTCAAATTTCTAAGTTTTAGGGAGAGGTTGAGGTTCGATCCTTTGCT
GTAATCCTTCCTGTCCTCCTTTCCCATTTCCTTCTTCTGCCTCTTCCATT
ACCCATTTCCTTCGTTTCTTGTTGATGTTCTCGTGTCCCTTTTACTGCTT
TTTCTTCTCTTATTATCGCTCTTGTCCTCTTTCCTCCCTCACATATCTCC
GCACCTTTTCCCATTCATTAAGATGCAAATTGTCACGCCATGAGGAAAAC
AATTGTAGTTATACTGCCCGCTCTCCTTTCCTTCCTCCTTCCCACTCGTT
TCTACTCTCCTCAAATTTGTTAAGCACTGAAACTAATAATAGTACGTATG
TACAGAAAAGAAAAATTTTCAAATTTAAAGGAGATAGAGAGACCAACATA
CCCTCACTTACAGGTACGGAGAAAAACACAGAGAGGCTCTCTCAAAACAC
TCTCTCTTTCCCTTCTCCCCACCCACACC
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Coding sequence (CDS) from alignment at scaffold_26:356708..357936-

>mRNA_8615 ID=mRNA_8615|Name=jgi.p|Nanoce1779_2|603358|organism=Nannochloropsis oceanica|type=CDS|length=216bp|location=Sequence derived from alignment at scaffold_26:356708..357936- (Nannochloropsis oceanica)
ATGAAAAAAATTACACTTAAAGTTGTTGCTGCTTCTGCTGTTCTATGCTT
AATGATCCTGATGCTTCACACTATTTATTACATGCACTCTGCTCTTGTGG
CTATCTATCTCCATCTTCTCTTCCTCCTCCTCTTTTCCCCTCCACGACGT
CATAGCGCTTTGCGCCTCAAATTTCTAAGTTTTAGGGAGAGGTTGAGGTT
CGATCCTTTGCTGTAA
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Synonyms
Publications