jgi.p|Nanoce1779_2|210509, mRNA_8612 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|210509
Unique NamemRNA_8612
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1681
Alignment locationscaffold_26:344487..346975 -

Link to JBrowse

Properties
Property NameValue
TranscriptId210595
TrackFilteredModels2
ProteinId210509
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_26supercontigscaffold_26:344487..346975 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|210509gene_8612Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|210509mRNA_8612-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_8612CDS_8612Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_8612 ID=mRNA_8612|Name=jgi.p|Nanoce1779_2|210509|organism=Nannochloropsis oceanica|type=mRNA|length=1681bp
AGCATGAATCACCGCTTTCTCCCAACGCTTCCCCTCAGAATCTCTCCCTT
CCTCTCCCTTCCCTCGCTCAAAGCTGACGAATCATCGTCCCCAACACCGT
ATCCTATCCCTCATTCGTCTCATCGCTCGCTCGTTTTCGGGATCCCTGAG
GCACCTCCACGCCTTTTATAAGCTGATCTACCGAGAAAAAACGATTCCCT
GCCCATGCTCCTCCTTCTAAACCCCCTCCTTCTCCTCCTGCCGGGGTAGC
AGGCATAGAGGAAGAGAGGCCCAAGGAGCCGAAGGAAGACGAGGAGGATA
CCAAGAAGTCTTGCAATGGAAAAGGGTCTTCCAACTCTCCCCCCTGCTGC
TGCAGCCTATCCAAAGACGCTGCACCCCGGGAATAACGGAAAAGTCCTCC
CTCCAGCCCTTCCACCCCTCCCTCCATTCCTTCCCCCATTCCTCCTGCTG
CTGCGACTACTGCTGCTTTATGATCGGTGCTCAACCCCAGAGAGTCTGAG
GTCGTCGTCAGCGCTGCTCCTGCTGCTTCTCCCACAGCAACCAACAGCGC
TGCTTTTCCTGCGCCTTCACCCCGGAGACCATCAGCACGCAAGTGGGCAG
GGCTGTGGACAGGGTGCTGCTGAAGTTGAACAGTCTGGCACGCCTGCTGT
GGGTGAAGCAGATGATGATCCTGCTGCTGCTCCTGCTGTTGCCGGTTGGG
GAGGGCAGGGAGCGAGCTTAGCTGTGCGGCCTCCTGCGGCTGCTGTTGCT
GTTGTCGCTGGTACTGCAGCTGCTGTACTAACAATCCCTTGGAGTGAGGA
ACTGTTGATTGTTGTTGGTGCTGCTGATGCTGCTGGTGGTGCTGCTGCTG
GGACTGCTGTTGCTGGGGCTGCTGCTCGGCGGGGTAGTCGATCGAACACC
ACGAGGGACCGATGCCGAAAGAGTGGTGGAGGTCAAGGTTGGAAAGGCAA
GGAGGCAAACCCAGGCTATCTAGACTCTCACGACGACGAGAAGAGGACCG
ATGATGGTGCTGTGGCTGCGGCGGCTGCTGCTGCTGCTGTTGCTGCGGCT
GCTGCATCTTTAGCTTCTTACGCTGTACGGGGGAGGGCATCAGCATGCCC
GCTCCGTCTACCTTCAGTCCTTGCGTCGCAGACACCACCTTGCAACCACT
ACTGTGACTATATCCACCAGCGTTGCTACTGCTGTTACTACCATTATGAT
CATACTGCTTCGTCAATTCGACCCCCACTCTCAATTTTTCCGCCACCCCC
TTCACTAGCAACTCATCCAAATAAGTAACCGCCCTCAAGTTCGGTCTCGC
CAGCACCGCTCTCTGCTCCTCCCATCCATATCGTCCATCGATCTCTATCA
CGTCTTTTTCCCATGAGTAATTCATCACCATCGGATCCGACCTACTTATA
CCCTCCCGAAACATCTTCAAGTTTCCCCCTCCCTCCTTGTCATCCGCCCC
ACGCATAGGGAGCAAAAATACAGCTAAAGGCCGGGTTTTCAAAAAGGGGT
TGATGCTCTGCATCTGCTCTTCGACACTGGCACTTATCGGCTGCGCCCGT
AACAAGCGACCATACATGAGGTCGAAGAAGCGATGGAGGATCAGGTTGGT
AGGATAGTAGTTCTTCAGCATCTTGGCTTTGGGGATCCGGGACCCATCTT
TTGTGACCCAGTCGCGTTCAATCCTGCGGAG
back to top

protein sequence of jgi.p|Nanoce1779_2|210509

>mRNA_8612-protein ID=mRNA_8612-protein|Name=jgi.p|Nanoce1779_2|210509|organism=Nannochloropsis oceanica|type=polypeptide|length=321bp
MEKGLPTLPPAAAAYPKTLHPGNNGKVLPPALPPLPPFLPPFLLLLRLLL
LYDRCSTPESLRSSSALLLLLLPQQPTALLFLRLHPGDHQHASGQGCGQG
AAEVEQSGTPAVGEADDDPAAAPAVAGWGGQGASLAVRPPAAAVAVVAGT
AAAVLTIPWSEELLIVVGAADAAGGAAAGTAVAGAAARRGSRSNTTRDRC
RKSGGGQGWKGKEANPGYLDSHDDEKRTDDGAVAAAAAAAAVAAAAASLA
SYAVRGRASACPLRLPSVLASQTPPCNHYCDYIHQRCYCCYYHYDHTASS
IRPPLSIFPPPPSLATHPNK*
back to top

mRNA from alignment at scaffold_26:344487..346975-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_8612 ID=mRNA_8612|Name=jgi.p|Nanoce1779_2|210509|organism=Nannochloropsis oceanica|type=mRNA|length=2489bp|location=Sequence derived from alignment at scaffold_26:344487..346975- (Nannochloropsis oceanica)
AGCATGAATCACCGCTTTCTCCCAACGCTTCCCCTCAGAATCTCTCCCTT
CCTCTCCCTTCCCTCGCTCAAAGCTGACGAATCATCGTCCCCAACACCGT
ATCCTATCCCTCATTCGTCTCATCGCTCGCTCGTTTTCGGGATCCCTGAG
GCACCTCCACGCCTTTTATAAGCTGATCTACCGAGAAAAAACGATTCCCT
GCCCATGCTCCTCCTTCTAAACCCCCTCCTTCTCCTCCTGCCGGGGTAGC
AGGCATAGAGGAAGAGAGGCCCAAGGAGCCGAAGGAAGACGAGGAGGATA
CCAAGAAGTCTTGCAATGGAAAAGGGTCTTCCAACTCTCCCCCCTGCTGC
TGCAGCCTATCCAAAGACGCTGCACCCCGGGAATAACGGAAAAGTCCTCC
CTCCAGCCCTTCCACCCCTCCCTCCATTCCTTCCCCCATTCCTCCTGCTG
CTGCGACTACTGCTGCTTTATGATCGGTGCTCAACCCCAGAGAGTCTGAG
GTCGTCGTCAGCGCTGCTCCTGCTGCTTCTCCCACAGCAACCAACAGCGC
TGCTTTTCCTGCGCCTTCACCCCGGAGACCATCAGCACGCAAGTGGGCAG
GGCTGTGGACAGGGTGCTGCTGAAGTTGAACAGTCTGGCACGCCTGCTGT
GGGTGAAGCAGATGATGATCCTGCTGCTGCTCCTGCTGTTGCCGGTTGGG
GAGGGCAGGGAGCGAGCTTAGCTGTGCGGCCTCCTGCGGCTGCTGTTGCT
GTTGTCGCTGGTACTGCAGCTGCTGTACTAACAATCCCTTGGAGTGAGGA
ACTGTTGATTGTTGTTGGTGCTGCTGATGCTGCTGGTGGTGCTGCTGCTG
GGACTGCTGTTGCTGGGGCTGCTGCTCGGCGGGGTAGTCGATCGAACACC
ACGAGGGACCGATGCCGAAAGAGTGGTGGAGGTCAAGGTTGGAAAGGCAA
GGAGGCAAACCCAGGCTATCTAGACTCTCACGACGACGAGAAGAGGACCG
ATGATGGTGCTGTGGCTGCGGCGGCTGCTGCTGCTGCTGTTGCTGCGGCT
GCTGCATCTTTAGCTTCTTACGCTGTACGGGGGAGGGCATCAGCATGCCC
GCTCCGTCTACCTTCAGTCCTTGCGTCGCAGACACCACCTTGCAACCACT
ACTGTGACTATATCCACCAGCGTTGCTACTGCTGTTACTACCATTATGAT
CATACTGCTGTCGACGGTGGGGGCTCAACTCCGACACGGCCCCAAAGGGC
GTGGCCATCATGTGATTCATGCCTCCCATCATTCCCAACATCAGCTCCTT
AGTCGTAGCCGGGGAAGGAAGGGGAGGAGGAAGAACAGGGGCTCGAATGG
CAGCACATTGTCGAAGACGGGCCCAGGTGTCACTGCCCGTGTGCTTGAGG
ATCAGGGAGGTGATGTTTGGGTGCGACTCGTGTCGGTCAATGAACGTCAA
TCGGCATTTCTCGTTCACTGTCGTTACTTCGAAGTAAAATAGGGACGTCT
GAATGCAGCTGCTGTTGCTGACTCCTTCTATTTTAAAACCTGCACCCGTC
GGCCCCACCCCTGAGGTAGGGGGGGAAGAAGGGAAGGGTGGTATGTACTC
AAGAGCGATCCAACCGGGTTGGGTGTTCGACGCCCTCAAGTAAAAATCCC
CAGGCCTCTTCAACTCCTTCGCCTTCCTTGTCGTGATATACATGCAAATA
TTCTCCCTCCCAATCTCCCTTCCTTCCCCCTCCGTCCGCTTCAAGCACGC
CACGAGCGCCGCCAGCTGCACTTTGATGGAAGCCGCCTTCCCTGTCAATC
CTGCGGCCCATACAAAAAACGCTTGAAACTCCTCGATTGTCACAGTCTGC
TTATACTCATACGGCCCACACAACAAGTACCCGCAACGTCCCCCGCAATT
CCTCACTAAAACATGACAGAAACACCGCCAAGTCTACCTCCCTGACCTCC
CCAATCTCCCCCATCCCCTCATCCTCCCCCCGTGCCCCCCACTTTTCAAA
CGCCGACAGCCACAAAGTCGTCAATTCGACCCCCACTCTCAATTTTTCCG
CCACCCCCTTCACTAGCAACTCATCCAAATAAGTAACCGCCCTCAAGTTC
GGTCTCGCCAGCACCGCTCTCTGCTCCTCCCATCCATATCGTCCATCGAT
CTCTATCACGTCTTTTTCCCATGAGTAATTCATCACCATCGGATCCGACC
TACTTATACCCTCCCGAAACATCTTCAAGTTTCCCCCTCCCTCCTTGTCA
TCCGCCCCACGCATAGGGAGCAAAAATACAGCTAAAGGCCGGGTTTTCAA
AAAGGGGTTGATGCTCTGCATCTGCTCTTCGACACTGGCACTTATCGGCT
GCGCCCGTAACAAGCGACCATACATGAGGTCGAAGAAGCGATGGAGGATC
AGGTTGGTAGGATAGTAGTTCTTCAGCATCTTGGCTTTGGGGATCCGGGA
CCCATCTTTTGTGACCCAGTCGCGTTCAATCCTGCGGAG
back to top

Coding sequence (CDS) from alignment at scaffold_26:344487..346975-

>mRNA_8612 ID=mRNA_8612|Name=jgi.p|Nanoce1779_2|210509|organism=Nannochloropsis oceanica|type=CDS|length=1926bp|location=Sequence derived from alignment at scaffold_26:344487..346975- (Nannochloropsis oceanica)
TCGTCAATTCGACCCCCACTCTCAATTTTTCCGCCACCCCCTTCACTAGC
AACTCATCCAAATAAGTAAATGGAAAAGGGTCTTCCAACTCTCCCCCCTG
CTGCTGCAGCCTATCCAAAGACGCTGCACCCCGGGAATAACGGAAAAGTC
CTCCCTCCAGCCCTTCCACCCCTCCCTCCATTCCTTCCCCCATTCCTCCT
GCTGCTGCGACTACTGCTGCTTTATGATCGGTGCTCAACCCCAGAGAGTC
TGAGGTCGTCGTCAGCGCTGCTCCTGCTGCTTCTCCCACAGCAACCAACA
GCGCTGCTTTTCCTGCGCCTTCACCCCGGAGACCATCAGCACGCAAGTGG
GCAGGGCTGTGGACAGGGTGCTGCTGAAGTTGAACAGTCTGGCACGCCTG
CTGTGGGTGAAGCAGATGATGATCCTGCTGCTGCTCCTGCTGTTGCCGGT
TGGGGAGGGCAGGGAGCGAGCTTAGCTGTGCGGCCTCCTGCGGCTGCTGT
TGCTGTTGTCGCTGGTACTGCAGCTGCTGTACTAACAATCCCTTGGAGTG
AGGAACTGTTGATTGTTGTTGGTGCTGCTGATGCTGCTGGTGGTGCTGCT
GCTGGGACTGCTGTTGCTGGGGCTGCTGCTCGGCGGGGTAGTCGATCGAA
CACCACGAGGGACCGATGCCGAAAGAGTGGTGGAGGTCAAGGTTGGAAAG
GCAAGGAGGCAAACCCAGGCTATCTAGACTCTCACGACGACGAGAAGAGG
ACCGATGATGGTGCTGTGGCTGCGGCGGCTGCTGCTGCTGCTGTTGCTGC
GGCTGCTGCATCTTTAGCTTCTTACGCTGTACGGGGGAGGGCATCAGCAT
GCCCGCTCCGTCTACCTTCAGTCCTTGCGTCGCAGACACCACCTTGCAAC
CACTACTGTGACTATATCCACCAGCGTTGCTACTGCTGTTACTACCATTA
TGATCATACTGCTTCGTCAATTCGACCCCCACTCTCAATTTTTCCGCCAC
CCCCTTCACTAGCAACTCATCCAAATAAGTAAATGGAAAAGGGTCTTCCA
ACTCTCCCCCCTGCTGCTGCAGCCTATCCAAAGACGCTGCACCCCGGGAA
TAACGGAAAAGTCCTCCCTCCAGCCCTTCCACCCCTCCCTCCATTCCTTC
CCCCATTCCTCCTGCTGCTGCGACTACTGCTGCTTTATGATCGGTGCTCA
ACCCCAGAGAGTCTGAGGTCGTCGTCAGCGCTGCTCCTGCTGCTTCTCCC
ACAGCAACCAACAGCGCTGCTTTTCCTGCGCCTTCACCCCGGAGACCATC
AGCACGCAAGTGGGCAGGGCTGTGGACAGGGTGCTGCTGAAGTTGAACAG
TCTGGCACGCCTGCTGTGGGTGAAGCAGATGATGATCCTGCTGCTGCTCC
TGCTGTTGCCGGTTGGGGAGGGCAGGGAGCGAGCTTAGCTGTGCGGCCTC
CTGCGGCTGCTGTTGCTGTTGTCGCTGGTACTGCAGCTGCTGTACTAACA
ATCCCTTGGAGTGAGGAACTGTTGATTGTTGTTGGTGCTGCTGATGCTGC
TGGTGGTGCTGCTGCTGGGACTGCTGTTGCTGGGGCTGCTGCTCGGCGGG
GTAGTCGATCGAACACCACGAGGGACCGATGCCGAAAGAGTGGTGGAGGT
CAAGGTTGGAAAGGCAAGGAGGCAAACCCAGGCTATCTAGACTCTCACGA
CGACGAGAAGAGGACCGATGATGGTGCTGTGGCTGCGGCGGCTGCTGCTG
CTGCTGTTGCTGCGGCTGCTGCATCTTTAGCTTCTTACGCTGTACGGGGG
AGGGCATCAGCATGCCCGCTCCGTCTACCTTCAGTCCTTGCGTCGCAGAC
ACCACCTTGCAACCACTACTGTGACTATATCCACCAGCGTTGCTACTGCT
GTTACTACCATTATGATCATACTGCT
back to top
Synonyms
Publications