jgi.p|Nanoce1779_2|574411, mRNA_861 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|574411
Unique NamemRNA_861
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length625
Alignment locationscaffold_2:602428..603200 +

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Properties
Property NameValue
TranscriptId574497
TrackFilteredModels2
ProteinId574411
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_2supercontigscaffold_2:602428..603200 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|574411gene_861Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|574411mRNA_861-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_861CDS_861Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_861 ID=mRNA_861|Name=jgi.p|Nanoce1779_2|574411|organism=Nannochloropsis oceanica|type=mRNA|length=625bp
CAACAGGGCAGCCAACAATAATGCATCAGCCGCCGCTTTCCCCCTCCTCA
CTGCCTTCAAGTCCCCGACCAGAGCATGACGCCAGCTATTGGAAACAAAG
GGCCGCGCAGCTGGAAAAAGAGGTAAGACGAACGAGGACATGTGGAGAAC
AGCACTTAGGACCTAGAATGGCCGCAGGCTGAATGGCCCTTTGTTAGCTT
TCCCCTCTGTTATCTCTCTCCCCTCCCTCCTTCCCGTCCCTCCCGTCCGT
CCCCCGTAGCTACTCGAAATGAAGGAGCGCTCGATAGAAATGTTCAGTCG
AACCGAAGCAGAGGAGGAAGGTCTCATCAATAAGCTCATCAGCCGCCTGG
ACGAACTCAAGAAGGAGAAGGAGCACTTGGCCATTGAGGTGGAGCGGGAG
GAGGAGATGATCTCCAACACCCTCCAAAAGAAGCTCACTAAAGTGCTACA
AGAAAAAATTGACCTTGAAAACCAGCTGGAAGCAGAGCAAGAAGCCATAG
TCAACAAACTCGGGTAAGCCTTTGCTTGAAATTATCTCTCCCTCTTTTTC
TTGCTTACATGTGTCTCTCTCTTCTCTCACATACAACAAAACCGACTACT
CAGGGCTGAGATCTCGAAGCTACGC
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protein sequence of jgi.p|Nanoce1779_2|574411

>mRNA_861-protein ID=mRNA_861-protein|Name=jgi.p|Nanoce1779_2|574411|organism=Nannochloropsis oceanica|type=polypeptide|length=83bp
MKERSIEMFSRTEAEEEGLINKLISRLDELKKEKEHLAIEVEREEEMISN
TLQKKLTKVLQEKIDLENQLEAEQEAIVNKLG*
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mRNA from alignment at scaffold_2:602428..603200+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_861 ID=mRNA_861|Name=jgi.p|Nanoce1779_2|574411|organism=Nannochloropsis oceanica|type=mRNA|length=773bp|location=Sequence derived from alignment at scaffold_2:602428..603200+ (Nannochloropsis oceanica)
CAACAGGGCAGCCAACAATAATGCATCAGCCGCCGCTTTCCCCCTCCTCA
CTGCCTTCAAGTCCCCGACCAGAGCATGACGCCAGCTATTGGAAACAAAG
GGCCGCGCAGCTGGAAAAAGAGGTAAGACGAACGAGGACATGTGGAGAAC
AGCACTTAGGACCTAGAATGGCCGCAGGCTGAATGGCCCTTTGTTAGCTT
TCCCCTCTGTTATCTCTCTCCCCTCCCTCCTTCCCGTCCCTCCCGTCCGT
CCCCCGTAGCTACTCGAAATGAAGGAGCGCTCGATAGAAATGTTCAGTCG
AACCGAAGCAGAGGAGGAAGGTCTCATCAATAAGCTCATCAGCCGCCTGG
ACGAACTCAAGAAGGAGAAGGAGCACTTGGCCATTGAGGTGGAGCGGGAG
GAGGAGGTACGTTGAACATGTCCTTTTTCGCATTTGGGACTTTCGAATCT
TGCCTTGTAGGAAGTAATTGCAGGAGCCACTTTGCCTTGGGCATTCATCG
TCAGAATCCAGCCCTTTTCATGTCCAATTCCTCCTCCCCTACGCCCACCA
CCAGATGATCTCCAACACCCTCCAAAAGAAGCTCACTAAAGTGCTACAAG
AAAAAATTGACCTTGAAAACCAGCTGGAAGCAGAGCAAGAAGCCATAGTC
AACAAACTCGGGTAAGCCTTTGCTTGAAATTATCTCTCCCTCTTTTTCTT
GCTTACATGTGTCTCTCTCTTCTCTCACATACAACAAAACCGACTACTCA
GGGCTGAGATCTCGAAGCTACGC
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Coding sequence (CDS) from alignment at scaffold_2:602428..603200+

>mRNA_861 ID=mRNA_861|Name=jgi.p|Nanoce1779_2|574411|organism=Nannochloropsis oceanica|type=CDS|length=498bp|location=Sequence derived from alignment at scaffold_2:602428..603200+ (Nannochloropsis oceanica)
ATGAAGGAGCGCTCGATAGAAATGTTCAGTCGAACCGAAGCAGAGGAGGA
AGGTCTCATCAATAAGCTCATCAGCCGCCTGGACGAACTCAAGAAGGAGA
AGGAGCACTTGGCCATTGAGGTGGAGCGGGAGGAGGAGATGATCTCCAAC
ACCCTCCAAAAGAAGCTCACTAAAGTGCTACAAGAAAAAATTGACCTTGA
AAACCAGCTGGAAGCAGAGCAAGAAGCCATAGTCAACAAACTCGGGTAAA
TGAAGGAGCGCTCGATAGAAATGTTCAGTCGAACCGAAGCAGAGGAGGAA
GGTCTCATCAATAAGCTCATCAGCCGCCTGGACGAACTCAAGAAGGAGAA
GGAGCACTTGGCCATTGAGGTGGAGCGGGAGGAGGAGATGATCTCCAACA
CCCTCCAAAAGAAGCTCACTAAAGTGCTACAAGAAAAAATTGACCTTGAA
AACCAGCTGGAAGCAGAGCAAGAAGCCATAGTCAACAAACTCGGGTAA
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Synonyms
Publications